Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013866

Physical Location & Seq

Genomic Coordinates Forward (+)

1979068 .. 1980855

Gene Structure 1788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03600.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGGACAACAAGGCTGTCACCATCCGCACCCGGAAGTTCATGACCAACCGGCTTCTCTCTCGCAAGCAATTCGTCATTGATGTTTTGCATCCAGGGAGGCCAAATGTTTCCAAGGCCGAGCTGAAGGAGAAGCTAGCGAGGATGTACGAGGTTAAGGACACAAATGCAATCTTTGTTTTCAAGTTCAGGACTCACTTTGGTGGTGGTAAATCAACTGGGTTTGGGTTGATTTACGATTCTGTTGAGAACGCAAAGAAGTTTGAGCCCAAGTACAGATTGATCAGGAATGGACTTGATACCAAGGTAGCATCATCCAGGAAGCAGTTGAAGGAGAGGAAGAACCGTGCAAAGAAGATTCGAGGAGTAAAGAAGACAAAGGCTGGAGACGCTGCCAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

136

Amino Acids

15.49

Weight (kDa)

10.79

Isoelectric Point (pI)

13.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 98	9.7e-40	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920
fragaria_vesca	FvH4_6g03600 FvH4_6g03600 FvH4_6g03600
pyrus_communis	pycom12g21780
rosa_chinensis	RchiOBHm_Chr2g0084801
rosa_laevigata	RLG00000015640
rosa_multiflora	Rmu_sc0015119.1_g000002 Rmu_ssc0000436.1_g000002
rosa_rugosa	Rorug01G0456400
rosa_samantha	Rh2AG003500 Rh2BG005100 Rh2CG005500 Rh2DG004900 Rh6BG332700 Rh6DG325900
rosa_wichuraiana	Rw2G000400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 28
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	2 cut(s)	149, 275
AgsI	TTSAA	2 cut(s)	184, 331
AjnI	CCWGG	2 cut(s)	94, 317
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	124, 136
AluI	AGCT	2 cut(s)	124, 136
Alw26I	GTCTC	1 cut(s)	381
AoxI	GGCC	2 cut(s)	101, 117
ApeKI	GCWGC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	13
AsuNHI	GCTAGC	1 cut(s)	136
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	2 cut(s)	96, 319
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	34, 96, 319
BmrFI	CCNGG	3 cut(s)	34, 96, 319
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	100, 320
BmtI	GCTAGC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	95, 114, 303
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	96, 319
BseDI	CCNNGG	3 cut(s)	95, 114, 303
BseGI	GGATG	4 cut(s)	24, 91, 150, 314
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	103, 119
BsiSI	CCGG	2 cut(s)	34, 52
BsmAI	GTCTC	1 cut(s)	381
BsmBI	CGTCTC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	103, 119
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	2 cut(s)	5, 28
BspANI	GGCC	2 cut(s)	103, 119
BspHI	TCATGA	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	95, 114, 303
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	114, 303
Bst2UI	CCWGG	2 cut(s)	96, 319
Bst4CI	ACNGT	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	68, 138
BstF5I	GGATG	4 cut(s)	24, 91, 150, 314
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	2 cut(s)	96, 319
BstSCI	CCNGG	3 cut(s)	32, 94, 317
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	103, 119
BtsCI	GGATG	4 cut(s)	24, 91, 150, 314
Cac8I	GCNNGC	2 cut(s)	68, 138
CciI	TCATGA	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	51
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	148, 274
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	8 cut(s)	17, 55, 103, 119, 124, 136, 268, 383
CviKI_1	RGCY	8 cut(s)	17, 55, 103, 119, 124, 136, 268, 383
CviQI	GTAC	2 cut(s)	148, 274
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	114, 303
Eco24I	GRGCYC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	94, 317
EcoT14I	CCWWGG	2 cut(s)	114, 303
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	114, 303
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	1 cut(s)	46
FaiI	YATR	1 cut(s)	44
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	4 cut(s)	11, 78, 157, 301
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	103, 119
HapII	CCGG	2 cut(s)	34, 52
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	3 cut(s)	193, 239, 358
HpaII	CCGG	2 cut(s)	34, 52
HphI	GGTGA	1 cut(s)	13
Hpy188III	TCNNGA	3 cut(s)	43, 190, 286
HpyAV	CCTTC	2 cut(s)	121, 325
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	3 cut(s)	91, 170, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	282
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	100, 320
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	3 cut(s)	352, 367, 385
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	93, 135, 145, 330, 356
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	2 cut(s)	34, 52
MspR9I	CCNGG	3 cut(s)	34, 96, 319
MvaI	CCWGG	2 cut(s)	96, 319
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	282
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	201
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	239, 358
PfoI	TCCNGGA	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	94, 317
PspGI	CCWGG	2 cut(s)	94, 317
RsaI	GTAC	2 cut(s)	149, 275
RsaNI	GTAC	2 cut(s)	148, 274
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	1 cut(s)	282
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	3 cut(s)	34, 96, 319
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	4 cut(s)	126, 138, 156, 309
SfaNI	GCATC	2 cut(s)	100, 320
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	5, 28
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	32, 94, 317
StyI	CCWWGG	2 cut(s)	114, 303
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	361
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	239, 358
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	31
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.