Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013866

Physical Location & Seq

Genomic Coordinates Reverse (-)

56538834 .. 56541626

Gene Structure 2793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG332700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCGGACAACAAGGCTGTGACGATTCGTACCAGGAAGTTCATGACCAACCGTCTTCTCTCCAGGAAGCAATTCGTTATCGATGTTCTTCATCCAGGAAGACCCAATGTTTCCAAGACTGAGCTAAAGGAGAAACTGGCAAGGATGTACGAAGTGAAGGATACAAACTCTATCTTTGTGTTCAAGTTCCGCACCCATTTTGGAGGGGGAAAGTCCACTGGTTTTGGCTTGATTTATGATTCTGTAGAGAATGCAAAGAAGTTTGAGCCTAAGTACCGGCTAATCAGGGTAACTTTGTCTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

102

Amino Acids

11.85

Weight (kDa)

10.41

Isoelectric Point (pI)

17.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 97	1.2e-39	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920
fragaria_vesca	FvH4_6g03600 FvH4_6g03600 FvH4_6g03600
pyrus_communis	pycom12g21780
rosa_chinensis	RchiOBHm_Chr2g0084801
rosa_laevigata	RLG00000015640
rosa_multiflora	Rmu_sc0015119.1_g000002 Rmu_ssc0000436.1_g000002
rosa_rugosa	Rorug01G0456400
rosa_samantha	Rh2AG003500 Rh2BG005100 Rh2CG005500 Rh2DG004900 Rh6BG332700 Rh6DG325900
rosa_wichuraiana	Rw2G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 190
AfaI	GTAC	3 cut(s)	31, 149, 275
AgsI	TTSAA	1 cut(s)	184
AhdI	GACNNNNNGTC	1 cut(s)	51
AjnI	CCWGG	3 cut(s)	32, 62, 94
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	71
BbsI	GAAGAC	3 cut(s)	47, 106, 291
BciT130I	CCWGG	3 cut(s)	34, 64, 96
BciVI	GTATCC	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	154
Bme1390I	CCNGG	3 cut(s)	34, 64, 96
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	34, 64, 96
BpiI	GAAGAC	3 cut(s)	47, 106, 291
BpmI	CTGGAG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	141, 223
BseBI	CCWGG	3 cut(s)	34, 64, 96
BseCI	ATCGAT	1 cut(s)	81
BseGI	GGATG	2 cut(s)	91, 150
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	141, 223
BshVI	ATCGAT	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	5, 190
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	141, 223
BssAI	RCCGGY	1 cut(s)	276
Bst2UI	CCWGG	3 cut(s)	34, 64, 96
Bst4CI	ACNGT	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	120, 270
BstF5I	GGATG	2 cut(s)	91, 150
BstNI	CCWGG	3 cut(s)	34, 64, 96
BstSCI	CCNGG	3 cut(s)	32, 62, 94
BstSFI	CTRYAG	1 cut(s)	243
BstV2I	GAAGAC	3 cut(s)	47, 106, 291
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	154
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	91, 150
BtsIMutI	CAGTG	1 cut(s)	216
CciI	TCATGA	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	276
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	3 cut(s)	30, 148, 274
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	17, 124, 228, 268, 280
CviKI_1	RGCY	5 cut(s)	17, 124, 228, 268, 280
CviQI	GTAC	3 cut(s)	30, 148, 274
DdeI	CTNAG	2 cut(s)	120, 270
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	20
EcoRII	CCWGG	3 cut(s)	32, 62, 94
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 237
FatI	CATG	1 cut(s)	42
FokI	GGATG	2 cut(s)	78, 157
GsuI	CTGGAG	1 cut(s)	46
HapII	CCGG	1 cut(s)	277
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	2 cut(s)	25, 239
HpaII	CCGG	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	120, 270
Hsp92II	CATG	1 cut(s)	46
MaeIII	GTNAC	2 cut(s)	19, 289
MboII	GAAGA	4 cut(s)	47, 80, 111, 291
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	71
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	3 cut(s)	34, 64, 96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	34, 64, 96
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	25, 239
PfoI	TCCNGGA	2 cut(s)	62, 94
Psp6I	CCWGG	3 cut(s)	32, 62, 94
PspGI	CCWGG	3 cut(s)	32, 62, 94
RsaI	GTAC	3 cut(s)	31, 149, 275
RsaNI	GTAC	3 cut(s)	30, 148, 274
ScrFI	CCNGG	3 cut(s)	34, 64, 96
SetI	ASST	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	243
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	5, 190
StyD4I	CCNGG	3 cut(s)	32, 62, 94
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	25, 239
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	31, 80
TspRI	CASTG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.