pycom12g21780

Belongs to the eukaryotic ribosomal protein eS24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013866
Physical Location & Seq
Reverse (-)
22878214 .. 22879739
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g21780.4

Sequence Viewer

Length: 300 bp
ATGGCGGACAAGGCCGTCACCATCCGAACCAGGAAGTTCATGACCAACCGCCTTCTCTCTCGCAAGCAATTCGTCATTGATGTTCTTCATCCAGGCAGGCCAAATGTTTCCAAGGCTGAGCTGAAGGAGAAGCTGGCAAGACTCTATGAGGTCAAGGACCCGAACGCAATCTTTGTTTTCAAGTTCAGGACTCACTTTGGTGGTGGCAAATCTACTGGATTTGGATTGATTTATGACTCTGTTGAAAATGCGAAGAAGTATGAGCCCAAGTACAGGTTGATCGATCAGGAACGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S24e

Protein Analysis

100

Amino Acids

11.52

Weight (kDa)

10.1

Isoelectric Point (pI)

13.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04920
fragaria_vesca FvH4_6g03600 FvH4_6g03600 FvH4_6g03600
pyrus_communis pycom12g21780
rosa_chinensis RchiOBHm_Chr2g0084801
rosa_laevigata RLG00000015640
rosa_multiflora Rmu_sc0015119.1_g000002 Rmu_ssc0000436.1_g000002
rosa_rugosa Rorug01G0456400
rosa_samantha Rh2AG003500 Rh2BG005100 Rh2CG005500 Rh2DG004900 Rh6BG332700 Rh6DG325900
rosa_wichuraiana Rw2G000400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AciI CCGC 2 cut(s) 5, 49
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 181, 245
AjnI CCWGG 2 cut(s) 29, 91
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 2 cut(s) 121, 133
AluI AGCT 2 cut(s) 121, 133
AoxI GGCC 2 cut(s) 12, 98
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 10
AvaII GGWCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 267
BccI CCATC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 2 cut(s) 31, 93
BlpI GCTNAGC 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 31, 93
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 31, 93
Bpu1102I GCTNAGC 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 2 cut(s) 31, 93
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 21, 88
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 220
BshFI GGCC 2 cut(s) 14, 100
BshVI ATCGAT 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 273
BsnI GGCC 2 cut(s) 14, 100
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 279, 283
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 2 cut(s) 5, 49
BspANI GGCC 2 cut(s) 14, 100
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 282
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 279, 283
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 2 cut(s) 31, 93
BstC8I GCNNGC 3 cut(s) 65, 98, 135
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 21, 88
BstKTI GATC 2 cut(s) 282, 286
BstMBI GATC 2 cut(s) 279, 283
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 31, 93
BstSCI CCNGG 2 cut(s) 29, 91
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 2 cut(s) 14, 100
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 2 cut(s) 21, 88
Cac8I GCNNGC 3 cut(s) 65, 98, 135
CciI TCATGA 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 40
CviJI RGCY 6 cut(s) 14, 100, 116, 121, 133, 265
CviKI_1 RGCY 6 cut(s) 14, 100, 116, 121, 133, 265
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 281, 285
DpnII GATC 2 cut(s) 279, 283
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 2 cut(s) 29, 91
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 43
FaiI YATR 4 cut(s) 41, 147, 234, 261
FatI CATG 1 cut(s) 39
FokI GGATG 2 cut(s) 8, 75
FriOI GRGCYC 1 cut(s) 267
HaeIII GGCC 2 cut(s) 14, 100
Hin1II CATG 1 cut(s) 43
HinfI GANTC 3 cut(s) 141, 190, 236
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 3 cut(s) 40, 187, 287
HpyAV CCTTC 2 cut(s) 62, 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 43
Kzo9I GATC 2 cut(s) 279, 283
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 281, 285
MboI GATC 2 cut(s) 279, 283
MboII GAAGA 2 cut(s) 77, 265
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 1 cut(s) 68
MlyI GAGTC 3 cut(s) 135, 184, 230
MnlI CCTC 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 31, 93
MvaI CCWGG 2 cut(s) 31, 93
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 279, 283
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 198
PagI TCATGA 1 cut(s) 39
PleI GAGTC 3 cut(s) 135, 184, 230
PpsI GAGTC 3 cut(s) 135, 184, 230
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 29, 91
PspGI CCWGG 2 cut(s) 29, 91
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 198
Sau3AI GATC 2 cut(s) 279, 283
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 3 cut(s) 135, 184, 230
ScrFI CCNGG 2 cut(s) 31, 93
SduI GDGCHC 1 cut(s) 267
SetI ASST 4 cut(s) 123, 135, 153, 278
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 1 cut(s) 68
SsiI CCGC 2 cut(s) 5, 49
StyD4I CCNGG 2 cut(s) 29, 91
StyI CCWWGG 1 cut(s) 111
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 68
TatI WGTACW 1 cut(s) 270
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 28, 77
VpaK11BI GGWCC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.