Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015119.1

Orthogroup ID

OG0013866

Physical Location & Seq

Genomic Coordinates Forward (+)

5091 .. 6031

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015119.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggcggacaacaaggcagtcaccatccgcaccaggaagttcatgaccaaccgccttctctctcgcaagcaattcgtcattgatgttctccatccaggaaggccaaatgtttccaagacggagctgaaggagaagctagctagaatgtatgaggttaaggacacaaatgcaatctttgttttcaagttcagaactcactttggtggtggtaaatcgactgggtttgggttgatttatgattctgttgagaatgcaaagaagttcgagcccaagtacaggttgatcagggtaagtcctctgggatttaataaatctaagttagcgagcacaccggatgtcttgataggttatcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

118

Amino Acids

13.52

Weight (kDa)

10.28

Isoelectric Point (pI)

20.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920
fragaria_vesca	FvH4_6g03600 FvH4_6g03600 FvH4_6g03600
pyrus_communis	pycom12g21780
rosa_chinensis	RchiOBHm_Chr2g0084801
rosa_laevigata	RLG00000015640
rosa_multiflora	Rmu_sc0015119.1_g000002 Rmu_ssc0000436.1_g000002
rosa_rugosa	Rorug01G0456400
rosa_samantha	Rh2AG003500 Rh2BG005100 Rh2CG005500 Rh2DG004900 Rh6BG332700 Rh6DG325900
rosa_wichuraiana	Rw2G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 28, 52
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	32, 94
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	124, 136, 140
AluI	AGCT	3 cut(s)	124, 136, 140
Alw21I	GWGCWC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	13
AsuNHI	GCTAGC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	329
BccI	CCATC	2 cut(s)	32, 99
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	2 cut(s)	34, 96
BclI	TGATCA	1 cut(s)	282
BfaI	CTAG	2 cut(s)	137, 141
Bme1390I	CCNGG	2 cut(s)	34, 96
BmrFI	CCNGG	2 cut(s)	34, 96
BmrI	ACTGGG	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	34, 96
BseGI	GGATG	3 cut(s)	24, 91, 340
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	270, 329
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	3 cut(s)	5, 28, 52
BspANI	GGCC	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	34, 96
BstC8I	GCNNGC	3 cut(s)	68, 138, 325
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	24, 91, 340
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstNI	CCWGG	2 cut(s)	34, 96
BstSCI	CCNGG	2 cut(s)	32, 94
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	24, 91, 340
Cac8I	GCNNGC	3 cut(s)	68, 138, 325
CciI	TCATGA	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	103, 124, 136, 140, 268
CviKI_1	RGCY	5 cut(s)	103, 124, 136, 140, 268
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	32, 94
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 150, 237
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	282
FokI	GGATG	3 cut(s)	11, 78, 347
FriOI	GRGCYC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	137, 141
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	43, 340
HpyAV	CCTTC	3 cut(s)	65, 93, 121
HpyCH4V	TGCA	2 cut(s)	170, 254
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	19, 46, 81, 108, 204, 262, 271, 284, 345
MaeI	CTAG	2 cut(s)	137, 141
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	270, 329
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	2 cut(s)	145, 306
MseI	TTAA	3 cut(s)	156, 306, 355
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	34, 96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	34, 96
NdeII	GATC	1 cut(s)	282
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	201
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	32, 94
PspGI	CCWGG	2 cut(s)	32, 94
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	156, 306, 355
Sau3AI	GATC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	34, 96
SduI	GDGCHC	2 cut(s)	270, 329
SetI	ASST	6 cut(s)	126, 138, 142, 156, 281, 349
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	3 cut(s)	5, 28, 52
SspMI	CTAG	2 cut(s)	137, 141
StyD4I	CCNGG	2 cut(s)	32, 94
TaqI	TCGA	2 cut(s)	215, 264
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	156, 306, 355
Tru9I	TTAA	3 cut(s)	156, 306, 355
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	134
XspI	CTAG	2 cut(s)	137, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.