Rh2CG005500

Belongs to the eukaryotic ribosomal protein eS24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013866
Physical Location & Seq
Forward (+)
452885 .. 455149
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG005500.1

Sequence Viewer

Length: 354 bp
ATGGCCGATAACAAGGCGGTTACGATCCGAACCAGGAAGTTCATGACAAATCGTCTTCTCTCCAGGAAGCAATTCGTCATCGATGTTTTGCATCCAGGAAGACCAAACGTCTCCAAGGCCGAGTTGAAGGAGAAACTGGCAAGGATGTACGAAGTGAAGGATACAAATGCCATCTTTGTTTTCAAGTTCCGCACCCATTTTGGAGGGGGTAAATCCACTGGTTTTGGCCTGATTTATGATTCTGTAGAGAATGCCAAGAAGTTTGAGCCAAAGTACAGGCTCATCAGGGTAACTTTCCTTCTTGCCTCTTGTTCATTACATGAACATTGTAATTCTTTTTCAGACCTATGTTAA

Protein Analysis

117

Amino Acids

13.48

Weight (kDa)

9.86

Isoelectric Point (pI)

16.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S24e PF01282 7 - 97 3.9e-39 Ribosomal protein S24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04920
fragaria_vesca FvH4_6g03600 FvH4_6g03600 FvH4_6g03600
pyrus_communis pycom12g21780
rosa_chinensis RchiOBHm_Chr2g0084801
rosa_laevigata RLG00000015640
rosa_multiflora Rmu_sc0015119.1_g000002 Rmu_ssc0000436.1_g000002
rosa_rugosa Rorug01G0456400
rosa_samantha Rh2AG003500 Rh2BG005100 Rh2CG005500 Rh2DG004900 Rh6BG332700 Rh6DG325900
rosa_wichuraiana Rw2G000400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 190
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 149, 275
AgsI TTSAA 2 cut(s) 127, 184
AhdI GACNNNNNGTC 2 cut(s) 51, 107
AjnI CCWGG 3 cut(s) 32, 62, 94
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 19
AoxI GGCC 3 cut(s) 3, 117, 226
Asp700I GAANNNNTTC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
BbsI GAAGAC 2 cut(s) 47, 106
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 3 cut(s) 34, 64, 96
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 115
BfmI CTRYAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 154
Bme1390I CCNGG 3 cut(s) 34, 64, 96
BmeRI GACNNNNNGTC 2 cut(s) 51, 107
BmrFI CCNGG 3 cut(s) 34, 64, 96
BmsI GCATC 1 cut(s) 100
BpiI GAAGAC 2 cut(s) 47, 106
BpmI CTGGAG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 141, 223
BseBI CCWGG 3 cut(s) 34, 64, 96
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 91, 150
BseNI ACTGG 2 cut(s) 141, 223
BshFI GGCC 3 cut(s) 5, 119, 228
BshVI ATCGAT 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 3 cut(s) 5, 119, 228
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 2 cut(s) 17, 190
BspANI GGCC 3 cut(s) 5, 119, 228
BspDI ATCGAT 1 cut(s) 81
BspHI TCATGA 1 cut(s) 42
BspPI GGATC 1 cut(s) 19
BsrI ACTGG 2 cut(s) 141, 223
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 3 cut(s) 34, 64, 96
BstF5I GGATG 2 cut(s) 91, 150
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 24
BstNI CCWGG 3 cut(s) 34, 64, 96
BstSCI CCNGG 3 cut(s) 32, 62, 94
BstSFI CTRYAG 1 cut(s) 243
BstV2I GAAGAC 2 cut(s) 47, 106
Bsu15I ATCGAT 1 cut(s) 81
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 5, 119, 228
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 2 cut(s) 91, 150
BtsIMutI CAGTG 1 cut(s) 216
CciI TCATGA 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 2 cut(s) 148, 274
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 43, 320
CviJI RGCY 5 cut(s) 5, 119, 228, 268, 280
CviKI_1 RGCY 5 cut(s) 5, 119, 228, 268, 280
CviQI GTAC 2 cut(s) 148, 274
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
DriI GACNNNNNGTC 2 cut(s) 51, 107
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 2 cut(s) 51, 107
Eco130I CCWWGG 1 cut(s) 114
EcoRII CCWGG 3 cut(s) 32, 62, 94
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 2 cut(s) 46, 323
FaiI YATR 4 cut(s) 44, 237, 321, 349
FatI CATG 2 cut(s) 42, 319
FokI GGATG 2 cut(s) 78, 157
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 3 cut(s) 5, 119, 228
Hin1II CATG 2 cut(s) 46, 323
HinfI GANTC 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 29, 343
Hpy188III TCNNGA 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 121, 151, 308
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 46, 323
Kzo9I GATC 1 cut(s) 24
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 19, 289
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 2 cut(s) 47, 111
MluCI AATT 2 cut(s) 71, 331
MnlI CCTC 2 cut(s) 197, 316
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 1 cut(s) 352
MspR9I CCNGG 3 cut(s) 34, 64, 96
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 34, 64, 96
NdeII GATC 1 cut(s) 24
NlaIII CATG 2 cut(s) 46, 323
NmeAIII GCCGAG 1 cut(s) 145
PagI TCATGA 1 cut(s) 42
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 239
PfoI TCCNGGA 2 cut(s) 62, 94
Psp6I CCWGG 3 cut(s) 32, 62, 94
PspGI CCWGG 3 cut(s) 32, 62, 94
RsaI GTAC 2 cut(s) 149, 275
RsaNI GTAC 2 cut(s) 148, 274
SaqAI TTAA 1 cut(s) 352
Sau3AI GATC 1 cut(s) 24
ScrFI CCNGG 3 cut(s) 34, 64, 96
SetI ASST 2 cut(s) 111, 348
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 243
Sse9I AATT 2 cut(s) 71, 331
SsiI CCGC 2 cut(s) 17, 190
StyD4I CCNGG 3 cut(s) 32, 62, 94
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 71, 331
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 31, 303, 336
TspRI CASTG 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.