Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Forward (+)

1360837 .. 1362449

Gene Structure 1613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTGAAAAGGCGGTCACCATCCGAACCAGGAAATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTGGAAGAGCCAATGTTTCAAAGGCTGAGCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCAAGGATCCAAATGCAATCTTCGTATTCAAATTCAGAACCCACTTTGGAGGTGGTAAATCATCCGGGTTTGGTTTGATCTATGATACTGTTGAGAGCGCTAAGAAGTTTGAACCCAAATACAGACTTATCAGGAATGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATTAAGGAAAGGAAGAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGACAAAGGCTGGTGATGCCAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

133

Amino Acids

15.37

Weight (kDa)

10.7

Isoelectric Point (pI)

16.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	6 - 95	6.2e-39	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	152, 165
AcsI	RAATTY	2 cut(s)	35, 182
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	146
AfeI	AGCGCT	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	111, 181, 263
AjnI	CCWGG	3 cut(s)	29, 59, 91
AluBI	AGCT	2 cut(s)	121, 133
AluI	AGCT	2 cut(s)	121, 133
AlwI	GGATC	2 cut(s)	152, 165
Aor51HI	AGCGCT	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	35, 182
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	10, 80, 395
AsuNHI	GCTAGC	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	377
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	31, 61, 93
BcnI	CCSGG	1 cut(s)	217
BfaI	CTAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	252
BlpI	GCTNAGC	1 cut(s)	117
Bme1390I	CCNGG	4 cut(s)	31, 61, 93, 217
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	4 cut(s)	31, 61, 93, 217
BmsI	GCATC	1 cut(s)	376
BmtI	GCTAGC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	91, 358
BseBI	CCWGG	3 cut(s)	31, 61, 93
BseDI	CCNNGG	2 cut(s)	91, 358
BseGI	GGATG	3 cut(s)	21, 147, 212
BseMII	CTCAG	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	157, 228
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	159
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	152, 165
BspQI	GCTCTTC	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	91, 358
BssMI	GATC	2 cut(s)	157, 228
Bst2UI	CCWGG	3 cut(s)	31, 61, 93
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	117, 252, 300
BstDSI	CCRYGG	1 cut(s)	358
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	21, 147, 212
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	160, 231
BstMBI	GATC	2 cut(s)	157, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 386
BstNI	CCWGG	3 cut(s)	31, 61, 93
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	4 cut(s)	29, 59, 91, 215
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	3 cut(s)	21, 147, 212
Cac8I	GCNNGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	6 cut(s)	5, 101, 116, 121, 133, 380
CviKI_1	RGCY	6 cut(s)	5, 101, 116, 121, 133, 380
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	117, 252, 300
DpnI	GATC	2 cut(s)	159, 230
DpnII	GATC	2 cut(s)	157, 228
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco47III	AGCGCT	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	29, 59, 91
FaeI	CATG	1 cut(s)	43
FaiI	YATR	2 cut(s)	41, 234
FatI	CATG	1 cut(s)	39
FokI	GGATG	3 cut(s)	8, 154, 199
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	252
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	10, 80, 395
Hpy188I	TCNGA	2 cut(s)	26, 188
Hpy188III	TCNNGA	2 cut(s)	40, 283
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 386
HpyF3I	CTNAG	3 cut(s)	117, 252, 300
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	157, 228
LguI	GCTCTTC	1 cut(s)	91
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	159, 230
MboI	GATC	2 cut(s)	157, 228
MboII	GAAGA	6 cut(s)	77, 108, 163, 349, 361, 382
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	3 cut(s)	35, 182, 324
MnlI	CCTC	2 cut(s)	142, 194
MroXI	GAANNNNTTC	1 cut(s)	68
MseI	TTAA	2 cut(s)	327, 366
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	4 cut(s)	31, 61, 93, 217
MvaI	CCWGG	3 cut(s)	31, 61, 93
MwoI	GCNNNNNNNGC	2 cut(s)	11, 386
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	2 cut(s)	157, 228
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	16
PagI	TCATGA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	59
Psp6I	CCWGG	3 cut(s)	29, 59, 91
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	3 cut(s)	29, 59, 91
PspN4I	GGNNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	327, 366
Sau3AI	GATC	2 cut(s)	157, 228
ScrFI	CCNGG	4 cut(s)	31, 61, 93, 217
SetI	ASST	4 cut(s)	123, 135, 153, 205
SfaNI	GCATC	1 cut(s)	376
Sse9I	AATT	3 cut(s)	35, 182, 324
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	29, 59, 91, 215
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	3 cut(s)	35, 182, 324
Tru1I	TTAA	2 cut(s)	327, 366
Tru9I	TTAA	2 cut(s)	327, 366
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	347
XapI	RAATTY	2 cut(s)	35, 182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.