Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Forward (+)

16031732 .. 16033459

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGGACAACAAGGCTGTGACGATTCGTACCAGGAAGTTCATGACCAACCGTCTTCTCTCCAGGAAGCAATTCGTTATCGATGTTCTTCATCCAGGAAGACCCAATGTTTCCAAGACTGAGCTAAAGGAGAAACTGGCAAGGATGTACGAAGTCAAGGATACAAACTCTATCTTTGTGTTCAAGTTCCGCACCCATTTTGGAGGGGGAAAGTCCACTGGTTTTGGCTTGATTTATGATTCTGTAGAGAATGCAAAGAAGTTTGAGCCTAAGTACCGGCTAATCAGGAATGGGCTGGACACTAAGGTGGAAAAGTCAAGGAAGCAACTGAAAGAAAGGAAGAACAGAGCTAAGAAGATTCGCGGAGTAAAGAAGACCAAGGCTGGTGACGCCGCCAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

136

Amino Acids

15.63

Weight (kDa)

10.7

Isoelectric Point (pI)

13.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 98	5e-40	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	363
AciI	CCGC	4 cut(s)	5, 190, 363, 393
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	3 cut(s)	31, 149, 275
AgsI	TTSAA	1 cut(s)	184
AhdI	GACNNNNNGTC	1 cut(s)	51
AjnI	CCWGG	3 cut(s)	32, 62, 94
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	2 cut(s)	124, 350
AluI	AGCT	2 cut(s)	124, 350
Asp700I	GAANNNNTTC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	398
BbsI	GAAGAC	3 cut(s)	47, 106, 380
BciT130I	CCWGG	3 cut(s)	34, 64, 96
BciVI	GTATCC	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	34, 64, 96
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	34, 64, 96
BpiI	GAAGAC	3 cut(s)	47, 106, 380
BpmI	CTGGAG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	141, 223
BseBI	CCWGG	3 cut(s)	34, 64, 96
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	2 cut(s)	91, 150
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	141, 223
Bsh1236I	CGCG	1 cut(s)	363
BshVI	ATCGAT	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	256
BspACI	CCGC	4 cut(s)	5, 190, 363, 393
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	141, 223
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	378
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	3 cut(s)	34, 64, 96
Bst4CI	ACNGT	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	390
BstDEI	CTNAG	4 cut(s)	120, 270, 303, 351
BstF5I	GGATG	2 cut(s)	91, 150
BstFNI	CGCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	3 cut(s)	34, 64, 96
BstSCI	CCNGG	3 cut(s)	32, 62, 94
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	363
BstV2I	GAAGAC	3 cut(s)	47, 106, 380
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	154
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	91, 150
BtsIMutI	CAGTG	1 cut(s)	216
CciI	TCATGA	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	276
ClaI	ATCGAT	1 cut(s)	81
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	30, 148, 274
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	8 cut(s)	17, 124, 228, 268, 280, 295, 350, 383
CviKI_1	RGCY	8 cut(s)	17, 124, 228, 268, 280, 295, 350, 383
CviQI	GTAC	3 cut(s)	30, 148, 274
DdeI	CTNAG	4 cut(s)	120, 270, 303, 351
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	378
EcoRII	CCWGG	3 cut(s)	32, 62, 94
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 237
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	78, 157
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	46
HapII	CCGG	1 cut(s)	277
HgaI	GACGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	3 cut(s)	25, 239, 358
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	43, 286
Hpy8I	GTNNAC	1 cut(s)	216
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	4 cut(s)	120, 270, 303, 351
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	46
MaeIII	GTNAC	2 cut(s)	19, 386
MboII	GAAGA	6 cut(s)	47, 80, 111, 352, 367, 385
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	3 cut(s)	34, 64, 96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	34, 64, 96
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	389
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	19, 386
OliI	CACNNNNGTG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	25, 239, 358
PfoI	TCCNGGA	2 cut(s)	62, 94
PkrI	GCNGC	1 cut(s)	394
Psp6I	CCWGG	3 cut(s)	32, 62, 94
PspGI	CCWGG	3 cut(s)	32, 62, 94
RsaI	GTAC	3 cut(s)	31, 149, 275
RsaNI	GTAC	3 cut(s)	30, 148, 274
RseI	CAYNNNNRTG	1 cut(s)	305
SatI	GCNGC	1 cut(s)	393
ScrFI	CCNGG	3 cut(s)	34, 64, 96
SetI	ASST	3 cut(s)	126, 309, 352
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	4 cut(s)	5, 190, 363, 393
StyD4I	CCNGG	3 cut(s)	32, 62, 94
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	3 cut(s)	25, 239, 358
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	19, 386
Tsp45I	GTSAC	2 cut(s)	19, 386
TspDTI	ATGAA	2 cut(s)	31, 80
TspRI	CASTG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.