Prupe.6G339300_v2.0.a1

Belongs to the eukaryotic ribosomal protein eS24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0004025
Physical Location & Seq
Reverse (-)
29372357 .. 29374477
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G339300.1

Sequence Viewer

Length: 414 bp
ATGGCGGACAAGGCAGTCACCATCCGTACCAGGAAGTTCATGACCAACAGGCTTCTCTCTCGCAAGCAATTCGTCATTGATGTTCTTCATCCAGGCAGGCCAAATGTTTCCAAGGCTGAGCTGAAGGAGAAGCTAGCTAGACTGTATGAGGTTAAGGACCTGAATTCGATCTTTGTCTTCAAGTTCCGGACTCACTTTGGTGGTGGTAAATCTACTGGATTTGGATTAATTTATGATTCTGTAGAGAATGCAAAGAAGTACGAGCCCAAGTACAGGTTGATCAGGAATGGACTTGATACGAAGATAGAGAAGTCGAGAAAGCAGTTGAAGGAAAGGAAGAACAGAGCCAAGAAGATCAGAGGAGTAAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCTGGAAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S24e

Protein Analysis

138

Amino Acids

15.8

Weight (kDa)

10.64

Isoelectric Point (pI)

12.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 186
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 2 cut(s) 143, 366
AfaI GTAC 3 cut(s) 28, 260, 272
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 181, 328
AjnI CCWGG 2 cut(s) 29, 91
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 3 cut(s) 121, 133, 137
AluI AGCT 3 cut(s) 121, 133, 137
AlwNI CAGNNNCTG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 186
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 163
AseI ATTAAT 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 10
AsuNHI GCTAGC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 2 cut(s) 169, 377
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 2 cut(s) 31, 93
BclI TGATCA 1 cut(s) 279
BfaI CTAG 2 cut(s) 134, 138
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 1 cut(s) 390
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 2 cut(s) 31, 93
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 31, 93
BmsI GCATC 1 cut(s) 376
BmtI GCTAGC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 169, 377
Bpu1102I GCTNAGC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 111, 375, 393
BsaWI WCCGGW 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 220
BseAI TCCGGA 1 cut(s) 186
BseBI CCWGG 2 cut(s) 31, 93
BseDI CCNNGG 3 cut(s) 111, 375, 393
BseGI GGATG 2 cut(s) 21, 88
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 376
BshFI GGCC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 273
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 267
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 168, 279, 354
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 109
BspEI TCCGGA 1 cut(s) 186
BspHI TCATGA 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 111, 375, 393
BssMI GATC 3 cut(s) 168, 279, 354
BssT1I CCWWGG 3 cut(s) 111, 375, 393
Bst2UI CCWGG 2 cut(s) 31, 93
Bst4CI ACNGT 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 65, 98, 135
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 21, 88
BstKTI GATC 3 cut(s) 171, 282, 357
BstMBI GATC 3 cut(s) 168, 279, 354
BstMWI GCNNNNNNNGC 3 cut(s) 11, 386, 395
BstNI CCWGG 2 cut(s) 31, 93
BstSCI CCNGG 2 cut(s) 29, 91
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 2 cut(s) 169, 377
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 21, 88
Cac8I GCNNGC 3 cut(s) 65, 98, 135
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 3 cut(s) 27, 259, 271
CviAII CATG 1 cut(s) 40
CviQI GTAC 3 cut(s) 27, 259, 271
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 170, 281, 356
DpnII GATC 3 cut(s) 168, 279, 354
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 111, 375, 393
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 143, 366
EcoO109I RGGNCCY 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 29, 91
EcoT14I CCWWGG 3 cut(s) 111, 375, 393
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 3 cut(s) 111, 375, 393
FaeI CATG 1 cut(s) 43
FaiI YATR 3 cut(s) 41, 147, 234
FatI CATG 1 cut(s) 39
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 2 cut(s) 8, 75
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 2 cut(s) 134, 138
GluI GCNGC 1 cut(s) 390
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 187
Hin1II CATG 1 cut(s) 43
HinfI GANTC 2 cut(s) 190, 236
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 359, 385
Hpy188III TCNNGA 4 cut(s) 40, 187, 283, 315
HpyAV CCTTC 2 cut(s) 118, 322
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 386, 395
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 43
Kpn2I TCCGGA 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 3 cut(s) 168, 279, 354
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 134, 138
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 170, 281, 356
MboI GATC 3 cut(s) 168, 279, 354
MboII GAAGA 6 cut(s) 77, 169, 313, 349, 364, 382
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 68, 163, 228
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 2 cut(s) 142, 353
MroI TCCGGA 1 cut(s) 186
MseI TTAA 2 cut(s) 153, 227
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 2 cut(s) 31, 93
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 2 cut(s) 31, 93
MwoI GCNNNNNNNGC 3 cut(s) 11, 386, 395
NdeII GATC 3 cut(s) 168, 279, 354
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 1 cut(s) 43
NmuCI GTSAC 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 198
PagI TCATGA 1 cut(s) 39
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 157
PshBI ATTAAT 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 2 cut(s) 29, 91
PspGI CCWGG 2 cut(s) 29, 91
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 3 cut(s) 28, 260, 272
RsaNI GTAC 3 cut(s) 27, 259, 271
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 153, 227
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 3 cut(s) 168, 279, 354
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 2 cut(s) 31, 93
SduI GDGCHC 1 cut(s) 267
SetI ASST 6 cut(s) 123, 135, 139, 153, 162, 278
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 3 cut(s) 68, 163, 228
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 134, 138
StyD4I CCNGG 2 cut(s) 29, 91
StyI CCWWGG 3 cut(s) 111, 375, 393
TaaI ACNGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 167, 314
TasI AATT 3 cut(s) 68, 163, 228
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 153, 227
Tru9I TTAA 2 cut(s) 153, 227
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 28, 77
TspGWI ACGGA 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 157
VspI ATTAAT 1 cut(s) 227
XapI RAATTY 1 cut(s) 163
XspI CTAG 2 cut(s) 134, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.