Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Reverse (-)

10069440 .. 10070899

Gene Structure 1460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGAAAAAGCTGTCACTATCAGGACCAGAAACTTCATGACCAACAGGCTTCTCGCCAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAGAGCCAATGTTTCAAAGGCTGAGCTTAAGGAGAAATTGGCGAGGATGTATGAGGTTAAGGACCCAAATGCTATCTTCTGTTTCAAGTTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTTGATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGACCAAGGCTGGTGATACCAAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

133

Amino Acids

15.42

Weight (kDa)

10.53

Isoelectric Point (pI)

10.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	6 - 97	2.5e-38	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	349
AfaI	GTAC	1 cut(s)	272
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	111, 181
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	2 cut(s)	14, 121
AluI	AGCT	2 cut(s)	14, 121
AlwI	GGATC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	27, 157
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	27, 157
BbsI	GAAGAC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	122
BlpI	GCTNAGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	2 cut(s)	27, 157
BmgT120I	GGNCC	2 cut(s)	27, 157
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	358, 375
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	358, 375
BseGI	GGATG	2 cut(s)	88, 147
BseMII	CTCAG	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	228, 324, 354
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	91
BspTI	CTTAAG	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	358, 375
BssMI	GATC	3 cut(s)	228, 324, 354
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	91
BstAFI	CTTAAG	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	117, 252, 267
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	88, 147
BstKTI	GATC	3 cut(s)	231, 327, 357
BstMBI	GATC	3 cut(s)	228, 324, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	88, 147
CciI	TCATGA	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	27, 157
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	7 cut(s)	14, 52, 101, 116, 121, 265, 380
CviKI_1	RGCY	7 cut(s)	14, 52, 101, 116, 121, 265, 380
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	3 cut(s)	117, 252, 267
DpnI	GATC	3 cut(s)	230, 326, 356
DpnII	GATC	3 cut(s)	228, 324, 354
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	27, 157
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	41, 147, 222, 234
FatI	CATG	1 cut(s)	39
FokI	GGATG	2 cut(s)	75, 154
Hin1II	CATG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	5 cut(s)	25, 40, 216, 244, 283
HpyCH4III	ACNGT	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	117, 252, 267
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	228, 324, 354
LguI	GCTCTTC	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	3 cut(s)	230, 326, 356
MboI	GATC	3 cut(s)	228, 324, 354
MboII	GAAGA	8 cut(s)	77, 108, 163, 204, 349, 361, 364, 382
MflI	RGATCY	1 cut(s)	354
MluCI	AATT	2 cut(s)	68, 131
MnlI	CCTC	4 cut(s)	132, 142, 194, 327
MseI	TTAA	3 cut(s)	123, 153, 366
MspCI	CTTAAG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	3 cut(s)	228, 324, 354
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	16
PagI	TCATGA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	27, 157
PspPPI	RGGWCCY	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	123, 153, 366
Sau3AI	GATC	3 cut(s)	228, 324, 354
Sau96I	GGNCC	2 cut(s)	27, 157
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	4 cut(s)	16, 123, 153, 205
SinI	GGWCC	2 cut(s)	27, 157
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	68, 131
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	68, 131
TatI	WGTACW	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	123, 153, 366
Tru9I	TTAA	3 cut(s)	123, 153, 366
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	28, 77
TspGWI	ACGGA	1 cut(s)	347
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	27, 157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.