MD12G1236700.v1.1

Belongs to the eukaryotic ribosomal protein eS24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0004025
Physical Location & Seq
Reverse (-)
31051127 .. 31053203
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1236700.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTCATGACCAACCGCCTTCTCTCTCGCAAGCAATTCGTCATTGATGTTCTTCATCCAGGCAGGCCAAATGTTTCCAAGGCTGAGCTGAAGGAGAAGCTGGCAAGACTCTATGAGGTCAAGGATCCGAACGCAATCTTTGTTTTCAAGTTCAGGACCCACTTTGGTGGTGGCAAATCTACTGGATTTGGATTGATTTATGACTCTGTTGAAAACGCGAAGAAGTATGAGCCCAAGTACAGGTTGATCAGGAACGGACTGGATACTAAAGTAGAGAAGTCAAGAAAGCAATTGAAGGAGAGAAAGAACAGAGCCAAGAAGATCCGAGGAGTAAAGAAGACCAAGGCTTCAGATGCTGCCAAGACAAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S24e

Protein Analysis

137

Amino Acids

15.73

Weight (kDa)

10.64

Isoelectric Point (pI)

10.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S24e PF01282 6 - 97 6.8e-39 Ribosomal protein S24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccII CGCG 1 cut(s) 251
AciI CCGC 2 cut(s) 5, 49
AclWI GGATC 3 cut(s) 152, 165, 349
AcuI CTGAAG 2 cut(s) 143, 366
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 3 cut(s) 181, 245, 328
AjnI CCWGG 2 cut(s) 29, 91
AleI CACNNNNGTG 1 cut(s) 198
AluBI AGCT 2 cut(s) 121, 133
AluI AGCT 2 cut(s) 121, 133
AlwI GGATC 3 cut(s) 152, 165, 349
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 10
AvaII GGWCC 1 cut(s) 189
BaeI ACNNNNGTAYC 2 cut(s) 288, 321
BamHI GGATCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 2 cut(s) 31, 93
BciVI GTATCC 1 cut(s) 289
BclI TGATCA 1 cut(s) 279
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 1 cut(s) 390
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 391
Bme1390I CCNGG 2 cut(s) 31, 93
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 159, 191
BmrFI CCNGG 2 cut(s) 31, 93
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 111, 358, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 220, 297
BseBI CCWGG 2 cut(s) 31, 93
BseDI CCNNGG 3 cut(s) 111, 358, 375
BseGI GGATG 2 cut(s) 21, 88
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 220, 297
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 273
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 157, 279, 354
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 2 cut(s) 5, 49
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 251
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 159, 191
BspPI GGATC 3 cut(s) 152, 165, 349
BsrI ACTGG 2 cut(s) 220, 297
BssECI CCNNGG 3 cut(s) 111, 358, 375
BssMI GATC 3 cut(s) 157, 279, 354
BssT1I CCWWGG 2 cut(s) 111, 375
Bst2UI CCWGG 2 cut(s) 31, 93
BstC8I GCNNGC 3 cut(s) 65, 98, 135
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 21, 88
BstFNI CGCG 1 cut(s) 251
BstKTI GATC 3 cut(s) 160, 282, 357
BstMBI GATC 3 cut(s) 157, 279, 354
BstMWI GCNNNNNNNGC 2 cut(s) 11, 386
BstNI CCWGG 2 cut(s) 31, 93
BstSCI CCNGG 2 cut(s) 29, 91
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 157, 354
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 2 cut(s) 157, 354
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 21, 88
Cac8I GCNNGC 3 cut(s) 65, 98, 135
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 40
CviJI RGCY 7 cut(s) 100, 116, 121, 133, 265, 347, 380
CviKI_1 RGCY 7 cut(s) 100, 116, 121, 133, 265, 347, 380
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 117
DpnI GATC 3 cut(s) 159, 281, 356
DpnII GATC 3 cut(s) 157, 279, 354
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 111, 375
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 2 cut(s) 143, 366
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 29, 91
EcoT14I CCWWGG 2 cut(s) 111, 375
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 2 cut(s) 111, 375
FaeI CATG 1 cut(s) 43
FaiI YATR 4 cut(s) 41, 147, 234, 261
FatI CATG 1 cut(s) 39
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 2 cut(s) 8, 75
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
HaeIII GGCC 1 cut(s) 100
Hin1II CATG 1 cut(s) 43
HinfI GANTC 2 cut(s) 141, 236
HphI GGTGA 1 cut(s) 10
Hpy188I TCNGA 4 cut(s) 26, 162, 359, 385
Hpy188III TCNNGA 4 cut(s) 40, 187, 283, 315
HpyAV CCTTC 3 cut(s) 62, 118, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 386
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 3 cut(s) 157, 279, 354
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 159, 281, 356
MboI GATC 3 cut(s) 157, 279, 354
MboII GAAGA 4 cut(s) 77, 265, 364, 382
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 2 cut(s) 157, 354
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 2 cut(s) 68, 323
MlyI GAGTC 2 cut(s) 135, 230
MnlI CCTC 2 cut(s) 142, 353
MslI CAYNNNNRTG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 31, 93
MunI CAATTG 1 cut(s) 323
MvaI CCWGG 2 cut(s) 31, 93
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 11, 386
NdeII GATC 3 cut(s) 157, 279, 354
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 2 cut(s) 159, 191
NmuCI GTSAC 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 198
PagI TCATGA 1 cut(s) 39
PkrI GCNGC 1 cut(s) 391
PleI GAGTC 2 cut(s) 135, 230
PpsI GAGTC 2 cut(s) 135, 230
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 29, 91
PspGI CCWGG 2 cut(s) 29, 91
PspN4I GGNNCC 2 cut(s) 159, 191
PspPI GGNCC 1 cut(s) 189
PspPPI RGGWCCY 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 2 cut(s) 157, 354
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 3 cut(s) 157, 279, 354
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 2 cut(s) 135, 230
ScrFI CCNGG 2 cut(s) 31, 93
SduI GDGCHC 1 cut(s) 267
SetI ASST 4 cut(s) 123, 135, 153, 278
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 2 cut(s) 68, 323
SsiI CCGC 2 cut(s) 5, 49
StyD4I CCNGG 2 cut(s) 29, 91
StyI CCWWGG 2 cut(s) 111, 375
TasI AATT 2 cut(s) 68, 323
TatI WGTACW 1 cut(s) 270
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 28, 77
TspGWI ACGGA 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.