Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Forward (+)

10877089 .. 10879382

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1146300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCGGATAGCAAGGCGGTGACGATCCGAACGAGGAAGTTCATGACCAATCGTCTCCTCTCCAGAAAGCAGTTCGTTATCGATGTTCTGCATCCAGGAAGACCGAATGTTTCCAAGGCGGAGTTGAAGGAGAAACTGGCAAGATTGTATGAAGTGAGGGATCCAAATGCCATCTTTGTTTTCAAGTTCCGCACCCATTTTGGAGGAGGGAAATCCACTGGTTTTGGTTTGATTTATGATTCTGTTGAGAATGCAAAGAAGTACGAGCCCAAGTACAGGCTGATCAGGAATGGATTGGATACAAAGGTGGAGAAGTCAAGGAAACAACTCAAGGAAAGGAAGAACAGAGCCAAGAAGATCCGCGGAGTAAAGAAGACTAAGGCTGGTGATGCTGCCAAGGGCGGGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

139

Amino Acids

15.82

Weight (kDa)

10.71

Isoelectric Point (pI)

11.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 98	7.3e-39	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	363
AciI	CCGC	7 cut(s)	5, 17, 119, 190, 361, 363, 402
AclWI	GGATC	4 cut(s)	19, 155, 168, 352
AfaI	GTAC	2 cut(s)	263, 275
AfiI	CCNNNNNNNGG	2 cut(s)	276, 402
AgsI	TTSAA	2 cut(s)	127, 184
AhdI	GACNNNNNGTC	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	4 cut(s)	19, 155, 168, 352
ApeKI	GCWGC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	31, 398
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BamHI	GGATCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	106, 380
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	96
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	292
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	96
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	2 cut(s)	100, 379
BpiI	GAAGAC	2 cut(s)	106, 380
BpmI	CTGGAG	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	114, 361, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 402
Bse1I	ACTGG	2 cut(s)	141, 223
BseBI	CCWGG	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	114, 361, 396
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	2 cut(s)	276, 402
BseNI	ACTGG	2 cut(s)	141, 223
BseRI	GAGGAG	2 cut(s)	47, 219
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	363
BshVI	ATCGAT	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	276, 402
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	4 cut(s)	24, 160, 282, 357
BspACI	CCGC	7 cut(s)	5, 17, 119, 190, 361, 363, 402
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	4 cut(s)	19, 155, 168, 352
BsrI	ACTGG	2 cut(s)	141, 223
BssECI	CCNNGG	3 cut(s)	114, 361, 396
BssMI	GATC	4 cut(s)	24, 160, 282, 357
BssT1I	CCWWGG	2 cut(s)	114, 396
Bst2UI	CCWGG	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	4 cut(s)	27, 163, 285, 360
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	4 cut(s)	24, 160, 282, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	2 cut(s)	106, 380
BstX2I	RGATCY	2 cut(s)	160, 357
BstYI	RGATCY	2 cut(s)	160, 357
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	292
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	216
CciI	TCATGA	1 cut(s)	42
Cfr42I	CCGCGG	1 cut(s)	364
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	262, 274
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	4 cut(s)	268, 280, 350, 383
CviKI_1	RGCY	4 cut(s)	268, 280, 350, 383
CviQI	GTAC	2 cut(s)	262, 274
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	4 cut(s)	26, 162, 284, 359
DpnII	GATC	4 cut(s)	24, 160, 282, 357
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EciI	GGCGGA	2 cut(s)	20, 134
Eco130I	CCWWGG	2 cut(s)	114, 396
Eco24I	GRGCYC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	114, 396
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	114, 396
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 150, 237
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	46
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	2 cut(s)	31, 398
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	3 cut(s)	43, 63, 286
HpyAV	CCTTC	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	91, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	282
KspI	CCGCGG	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	24, 160, 282, 357
LpnPI	CCDG	8 cut(s)	76, 81, 108, 122, 204, 262, 271, 369
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	100, 379
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	4 cut(s)	26, 162, 284, 359
MboI	GATC	4 cut(s)	24, 160, 282, 357
MboII	GAAGA	4 cut(s)	111, 352, 367, 385
MflI	RGATCY	2 cut(s)	160, 357
MhlI	GDGCHC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	27, 68, 150, 197, 200
MspA1I	CMGCKG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	4 cut(s)	24, 160, 282, 357
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	162
PsuI	RGATCY	2 cut(s)	160, 357
RsaI	GTAC	2 cut(s)	263, 275
RsaNI	GTAC	2 cut(s)	262, 274
SacII	CCGCGG	1 cut(s)	364
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	4 cut(s)	24, 160, 282, 357
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	1 cut(s)	309
SfaNI	GCATC	2 cut(s)	100, 379
Sfr303I	CCGCGG	1 cut(s)	364
SgrBI	CCGCGG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SsiI	CCGC	7 cut(s)	5, 17, 119, 190, 361, 363, 402
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	2 cut(s)	114, 396
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	118
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	239
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	31, 165
TspRI	CASTG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.