Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Forward (+)

2730489 .. 2732490

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGGACAACAAGGCAGTCACCATCCGCACCAGGAAGTTCATGACCAACCGCCTTCTCTCTCGCAAGCAATTCGTCATTGATGTTCTCCATCCAGGAAGGCCAAATGTATCCAAGACGGAGCTGAAGGAGAAGCTAGCTAGAATGTATGAGGTTAAGGACACAAATGCAATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCGACTGGGTTTGGGTTGATTTATGATTCTGTTGAGAATGCAAAGAAGTTCGAGCCCAAGTACAGGTTGATCAGGAATGGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGTTGAAGGAGAGGAAGAACAGGGCAAAGAAGATTCGAGGAGTAAAGAAGACAAAGGCTGGAGATGCTGCCAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

135

Amino Acids

15.62

Weight (kDa)

10.7

Isoelectric Point (pI)

13.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 98	4.9e-40	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 28, 52
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	184, 331
AjnI	CCWGG	2 cut(s)	32, 94
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	124, 136, 140
AluI	AGCT	3 cut(s)	124, 136, 140
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	13
AsuNHI	GCTAGC	1 cut(s)	136
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	32, 99
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	2 cut(s)	34, 96
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	282
BfaI	CTAG	2 cut(s)	137, 141
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	34, 96
BmrFI	CCNGG	2 cut(s)	34, 96
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	379
BmtI	GCTAGC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	34, 96
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	2 cut(s)	24, 91
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	3 cut(s)	5, 28, 52
BspANI	GGCC	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	34, 96
BstC8I	GCNNGC	2 cut(s)	68, 138
BstF5I	GGATG	2 cut(s)	24, 91
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	2 cut(s)	34, 96
BstSCI	CCNGG	2 cut(s)	32, 94
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	380
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	24, 91
Cac8I	GCNNGC	2 cut(s)	68, 138
CciI	TCATGA	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	6 cut(s)	103, 124, 136, 140, 268, 383
CviKI_1	RGCY	6 cut(s)	103, 124, 136, 140, 268, 383
CviQI	GTAC	1 cut(s)	274
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	32, 94
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 150, 237
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	11, 78
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	137, 141
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	2 cut(s)	239, 358
HphI	GGTGA	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	43, 286
HpyAV	CCTTC	4 cut(s)	65, 93, 121, 325
HpyCH4V	TGCA	2 cut(s)	170, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	19, 46, 81, 108, 204, 262, 271, 331, 369
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	2 cut(s)	137, 141
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	3 cut(s)	352, 367, 385
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	3 cut(s)	145, 330, 356
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	34, 96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	34, 96
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	1 cut(s)	282
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	201
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	239, 358
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	32, 94
PspGI	CCWGG	2 cut(s)	32, 94
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	34, 96
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	6 cut(s)	126, 138, 142, 156, 281, 309
SfaNI	GCATC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	3 cut(s)	5, 28, 52
SspMI	CTAG	2 cut(s)	137, 141
StyD4I	CCNGG	2 cut(s)	32, 94
StyI	CCWWGG	1 cut(s)	303
TaqI	TCGA	3 cut(s)	215, 264, 361
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	239, 358
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	134
XspI	CTAG	2 cut(s)	137, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.