Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020870.1

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2697

Gene Structure 2697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020870.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

gtgtttcccagtctcaggcgaacccaagctcattcaaaaccaaccatggcggacaacaaggcagtcaccatccgcaccaggaagttcatgaccaaccgccttctctctcgcaagcaattcgtcattgatgttctccatccaggaaggccaaatgtttccaagacggagctgaaggagaagctagctagaatgtatgaggttaaggacacaaatgcaatctttgttttcaagttcagaactcactttggtggtggtaaatcgactgggtttgggttgatttatgattctgttgagaatgcaaagaagttcgagcccaagtacaggttgatcaggaatggacttgataccaaggtagagaagtcaaggaagcagttgaaggagaggaagaacagggcaaagaagattcgaggagtaaagaagacaaaggctggagatgctgccaagaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

150

Amino Acids

17.32

Weight (kDa)

10.92

Isoelectric Point (pI)

19.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 73, 97
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	15, 321
AgsI	TTSAA	3 cut(s)	36, 229, 376
AjnI	CCWGG	2 cut(s)	77, 139
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	4 cut(s)	29, 169, 181, 185
AluI	AGCT	4 cut(s)	29, 169, 181, 185
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	58
AsuNHI	GCTAGC	1 cut(s)	181
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	77, 144
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	2 cut(s)	79, 141
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	182, 186
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	79, 141
BmrFI	CCNGG	2 cut(s)	79, 141
BmrI	ACTGGG	2 cut(s)	3, 273
BmsI	GCATC	1 cut(s)	424
BmtI	GCTAGC	1 cut(s)	185
BmuI	ACTGGG	2 cut(s)	3, 273
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	45, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 321
Bse1I	ACTGG	2 cut(s)	9, 268
BseBI	CCWGG	2 cut(s)	79, 141
BseDI	CCNNGG	2 cut(s)	45, 348
BseGI	GGATG	2 cut(s)	69, 136
BseLI	CCNNNNNNNGG	2 cut(s)	15, 321
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	2 cut(s)	9, 268
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	15, 321
BsmAI	GTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	3 cut(s)	50, 73, 97
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	87
BspOI	GCTAGC	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	9, 268
BssECI	CCNNGG	2 cut(s)	45, 348
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	45, 348
Bst2UI	CCWGG	2 cut(s)	79, 141
BstC8I	GCNNGC	2 cut(s)	113, 183
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	69, 136
BstKTI	GATC	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstNI	CCWGG	2 cut(s)	79, 141
BstSCI	CCNGG	2 cut(s)	77, 139
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	69, 136
Cac8I	GCNNGC	2 cut(s)	113, 183
CciI	TCATGA	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	46, 88
CviJI	RGCY	7 cut(s)	29, 148, 169, 181, 185, 313, 428
CviKI_1	RGCY	7 cut(s)	29, 148, 169, 181, 185, 313, 428
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	45, 348
Eco24I	GRGCYC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	77, 139
EcoT14I	CCWWGG	2 cut(s)	45, 348
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	45, 348
FaeI	CATG	2 cut(s)	49, 91
FaiI	YATR	4 cut(s)	47, 89, 195, 282
FatI	CATG	2 cut(s)	45, 87
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	56, 123
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	2 cut(s)	182, 186
GluI	GCNGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	49, 91
HinfI	GANTC	2 cut(s)	284, 403
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	2 cut(s)	88, 331
HpyAV	CCTTC	4 cut(s)	110, 138, 166, 370
HpyCH4V	TGCA	2 cut(s)	215, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	49, 91
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	182, 186
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	3 cut(s)	397, 412, 430
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	1 cut(s)	116
MnlI	CCTC	3 cut(s)	190, 375, 401
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	246
MspR9I	CCNGG	2 cut(s)	79, 141
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	2 cut(s)	79, 141
MwoI	GCNNNNNNNGC	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	327
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	49, 91
NmuCI	GTSAC	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	246
PagI	TCATGA	1 cut(s)	87
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	284, 403
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	77, 139
PspGI	CCWGG	2 cut(s)	77, 139
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	79, 141
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	7 cut(s)	31, 171, 183, 187, 201, 326, 354
SfaNI	GCATC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	50, 73, 97
SspMI	CTAG	2 cut(s)	182, 186
StyD4I	CCNGG	2 cut(s)	77, 139
StyI	CCWWGG	2 cut(s)	45, 348
TaqI	TCGA	3 cut(s)	260, 309, 406
TasI	AATT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	2 cut(s)	284, 403
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	179
XspI	CTAG	2 cut(s)	182, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.