pycom11g25100

Belongs to the eukaryotic ribosomal protein eS24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004025
Physical Location & Seq
Reverse (-)
27974293 .. 27975988
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25100.1

Sequence Viewer

Length: 414 bp
ATGGCGGATACCAAGGCAGTGACGATCCGTACGAGGAAGTTCATGACCAATCGCCTTCTCTCCAGAAAGCAATTCGTCATCGATGTTCTGCATCCTGGCCGACCCAATGTCTCAAAGGCGGAGTTGAAGGAGAAACTTGCGAGGTTGTACGAGGTGAGGGACCCAAATGCCATCTTCGTATTCAAGTTCCGCACCCATTTTGGAGGGGGGAAGTCTACTGGTTTCGGTTTGATCTATGATTCTGTAGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTGATCAGGAATGGACTGGATACAAAGGTTGAAAAATCAAGGAAACAACTCAAGGAAAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTTAAGAAGACAAAGGCCGGTGATGCTGCCAAGGCGAAGAAGAAATGA

Protein Analysis

138

Amino Acids

15.79

Weight (kDa)

10.71

Isoelectric Point (pI)

9.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S24e PF01282 7 - 98 7.2e-39 Ribosomal protein S24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 215
AciI CCGC 3 cut(s) 5, 119, 190
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 4 cut(s) 31, 149, 263, 275
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 3 cut(s) 127, 184, 311
AhdI GACNNNNNGTC 1 cut(s) 107
AjnI CCWGG 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 19
AoxI GGCC 2 cut(s) 97, 381
ApeKI GCWGC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 166, 398
AvaII GGWCC 1 cut(s) 160
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 96
BciVI GTATCC 1 cut(s) 292
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 115
BfmI CTRYAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 160
BmeRI GACNNNNNGTC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 161, 162
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 100, 379
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 12, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 383
Bse1I ACTGG 2 cut(s) 223, 300
BseBI CCWGG 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 12, 396
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 223, 300
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 2 cut(s) 99, 383
BshVI ATCGAT 1 cut(s) 81
BsiSI CCGG 1 cut(s) 384
BsiWI CGTACG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 2 cut(s) 99, 383
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 24, 231, 282
BspACI CCGC 3 cut(s) 5, 119, 190
BspANI GGCC 2 cut(s) 99, 383
BspDI ATCGAT 1 cut(s) 81
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 161, 162
BspPI GGATC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 383
BsrI ACTGG 2 cut(s) 223, 300
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 12, 396
BssMI GATC 3 cut(s) 24, 231, 282
BssT1I CCWWGG 2 cut(s) 12, 396
Bst2UI CCWGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 3 cut(s) 27, 234, 285
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 3 cut(s) 24, 231, 282
BstMWI GCNNNNNNNGC 2 cut(s) 389, 398
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 380
Bsu15I ATCGAT 1 cut(s) 81
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 99, 383
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
CciI TCATGA 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 160
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 4 cut(s) 30, 148, 262, 274
CviAII CATG 1 cut(s) 43
CviJI RGCY 5 cut(s) 99, 268, 280, 350, 383
CviKI_1 RGCY 5 cut(s) 99, 268, 280, 350, 383
CviQI GTAC 4 cut(s) 30, 148, 262, 274
DpnI GATC 3 cut(s) 26, 233, 284
DpnII GATC 3 cut(s) 24, 231, 282
DriI GACNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 97
Eam1105I GACNNNNNGTC 1 cut(s) 107
EciI GGCGGA 2 cut(s) 20, 134
Eco130I CCWWGG 2 cut(s) 12, 396
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 12, 396
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 2 cut(s) 12, 396
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 237
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 42
FbaI TGATCA 1 cut(s) 282
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 78
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 2 cut(s) 99, 383
HapII CCGG 1 cut(s) 384
Hin1II CATG 1 cut(s) 46
HinfI GANTC 2 cut(s) 239, 358
HpaII CCGG 1 cut(s) 384
HphI GGTGA 2 cut(s) 166, 398
Hpy166II GTNNAC 1 cut(s) 216
Hpy188III TCNNGA 3 cut(s) 43, 63, 286
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 65, 121
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 398
Hsp92II CATG 1 cut(s) 46
KflI GGGWCCC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 3 cut(s) 24, 231, 282
LpnPI CCDG 8 cut(s) 76, 81, 108, 204, 262, 271, 281, 397
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 100, 379
MaeIII GTNAC 1 cut(s) 19
MalI GATC 3 cut(s) 26, 233, 284
MboI GATC 3 cut(s) 24, 231, 282
MboII GAAGA 4 cut(s) 166, 352, 367, 385
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 1 cut(s) 71
MnlI CCTC 5 cut(s) 27, 135, 145, 150, 197
MseI TTAA 1 cut(s) 369
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 389, 398
NdeII GATC 3 cut(s) 24, 231, 282
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 161, 162
NmuCI GTSAC 1 cut(s) 19
PagI TCATGA 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 239, 358
Pfl23II CGTACG 1 cut(s) 29
PkrI GCNGC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspLI CGTACG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 161, 162
PspPI GGNCC 1 cut(s) 160
PspPPI RGGWCCY 1 cut(s) 160
RsaI GTAC 4 cut(s) 31, 149, 263, 275
RsaNI GTAC 4 cut(s) 30, 148, 262, 274
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 3 cut(s) 24, 231, 282
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 270
SetI ASST 3 cut(s) 146, 156, 309
SfaNI GCATC 2 cut(s) 100, 379
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 71
SsiI CCGC 3 cut(s) 5, 119, 190
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 2 cut(s) 12, 396
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 71
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 2 cut(s) 239, 358
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.