Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Reverse (-)

34882576 .. 34884578

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1262800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGGATACCAAGGCGGTGACGATTCGTACGAGGAAGTTCATGACCAACCGCCTTCTCTCCAGAAAGCAATTCGTCATCGACGTTCTGCACCCTGGTCGACCCAATGTCTCAAAGGCAGAGCTGAAGGAGAAACTTGCGAGGTTGTACGAGGTGAGGGACCCAAATTCCATCTTCGTATTCAAGTTCCGCACCCATTTTGGAGGGGGGAAGTCCACTGGTTTCGGTTTGATTTATGATACCGTAGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTGATCAGGAATGGACTAGATACAAAGGTTGAAAAATCAAGGAAACAACTCAAGGAAAGGAAGAACAGAGCCAAGAAGATTCGTGGAGTTAAGAAGACAAAGGCCGGTGATGCTGCCAAGGCAAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

138

Amino Acids

15.82

Weight (kDa)

10.71

Isoelectric Point (pI)

7.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 98	1.7e-38	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	100
AciI	CCGC	4 cut(s)	5, 17, 52, 190
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	4 cut(s)	31, 149, 263, 275
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	184, 311
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	31, 166, 398
AvaII	GGWCC	1 cut(s)	160
BaeI	ACNNNNGTAYC	2 cut(s)	291, 324
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	160
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	161, 162
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	12, 94, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	12, 94, 396
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	384
BsiWI	CGTACG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	4 cut(s)	5, 17, 52, 190
BspANI	GGCC	1 cut(s)	383
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	161, 162
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	3 cut(s)	12, 94, 396
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	12, 396
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	244
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 398
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	216
CciI	TCATGA	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	4 cut(s)	30, 148, 262, 274
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	124, 268, 280, 350, 383
CviKI_1	RGCY	5 cut(s)	124, 268, 280, 350, 383
CviQI	GTAC	4 cut(s)	30, 148, 262, 274
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DriI	GACNNNNNGTC	1 cut(s)	107
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	12, 396
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	12, 396
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	12, 396
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 237
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	393
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	384
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	25, 358
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	3 cut(s)	31, 166, 398
Hpy166II	GTNNAC	2 cut(s)	101, 216
Hpy188III	TCNNGA	3 cut(s)	43, 63, 286
Hpy8I	GTNNAC	2 cut(s)	101, 216
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	65, 121
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 398
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	46
KflI	GGGWCCC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	282
LpnPI	CCDG	7 cut(s)	76, 81, 108, 204, 262, 271, 397
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	4 cut(s)	166, 352, 367, 385
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	71, 166
MnlI	CCTC	5 cut(s)	27, 135, 145, 150, 197
MseI	TTAA	1 cut(s)	369
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	389, 398
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	161, 162
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 81
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	25, 358
Pfl23II	CGTACG	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	394
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspLI	CGTACG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	161, 162
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
RsaI	GTAC	4 cut(s)	31, 149, 263, 275
RsaNI	GTAC	4 cut(s)	30, 148, 262, 274
SalI	GTCGAC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	5 cut(s)	87, 126, 146, 156, 309
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	71, 166
SsiI	CCGC	4 cut(s)	5, 17, 52, 190
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	2 cut(s)	12, 396
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	81, 100
TasI	AATT	2 cut(s)	71, 166
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	25, 358
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	100
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.