Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Reverse (-)

21213275 .. 21215085

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGGACAAGGCAGTCACCATCCGAGCCAGGAAGTTCATGACCAACCGCCTTCTCTCTCGCAAGCAATTCGTCATCGATGTTCTTCATCCAGGAAGGCCAAATGTTTCAAAGGCTGAGCTGAAGGAGAAGCTTGCAAGGCTCTATGAGGTCAAGGACCCGAACGCAATCTTTGTGTTCAAGTTCAGGACTCACTTTGGTGGTGGAAAATCTACTGGATTTGGATTGATTTATGACTCTGTTGAAAATGCGAAGAAGTACGAGCCCAAGTACAGGTTGATCAGGAACGGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGTTGAAGGAGAGAAAGAACAGAGCCAAGAAGATCCGAGGAGTAAAGAAGACCAAGGCATCAGATGCTGCAAAGTCAAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

137

Amino Acids

15.68

Weight (kDa)

10.64

Isoelectric Point (pI)

10.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AciI	CCGC	2 cut(s)	5, 49
AclWI	GGATC	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	260, 272
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	4 cut(s)	111, 181, 245, 328
AjnI	CCWGG	2 cut(s)	29, 91
AleI	CACNNNNGTG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	121, 133
AluI	AGCT	2 cut(s)	121, 133
AlwI	GGATC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	157
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	2 cut(s)	31, 93
BclI	TGATCA	1 cut(s)	279
BisI	GCNGC	1 cut(s)	390
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	2 cut(s)	31, 93
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	31, 93
BmsI	GCATC	2 cut(s)	376, 389
BpiI	GAAGAC	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	300, 358, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	31, 93
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	300, 358, 375
BseGI	GGATG	2 cut(s)	21, 88
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	376
BshFI	GGCC	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	273
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	279, 354
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	5, 49
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	300, 358, 375
BssMI	GATC	2 cut(s)	279, 354
BssT1I	CCWWGG	2 cut(s)	300, 375
Bst2UI	CCWGG	2 cut(s)	31, 93
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	65, 135
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	21, 88
BstKTI	GATC	2 cut(s)	282, 357
BstMBI	GATC	2 cut(s)	279, 354
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 139, 386
BstNI	CCWGG	2 cut(s)	31, 93
BstSCI	CCNGG	2 cut(s)	29, 91
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	21, 88
Cac8I	GCNNGC	2 cut(s)	65, 135
CaiI	CAGNNNCTG	1 cut(s)	389
CciI	TCATGA	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	157
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	259, 271
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	8 cut(s)	29, 100, 116, 121, 133, 142, 265, 347
CviKI_1	RGCY	8 cut(s)	29, 100, 116, 121, 133, 142, 265, 347
CviQI	GTAC	2 cut(s)	259, 271
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	281, 356
DpnII	GATC	2 cut(s)	279, 354
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	300, 375
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	29, 91
EcoT14I	CCWWGG	2 cut(s)	300, 375
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	300, 375
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 147, 234
FatI	CATG	1 cut(s)	39
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	2 cut(s)	8, 75
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	390
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	190, 236
HphI	GGTGA	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	26, 359, 385
Hpy188III	TCNNGA	3 cut(s)	40, 187, 283
HpyAV	CCTTC	4 cut(s)	62, 90, 118, 322
HpyCH4V	TGCA	2 cut(s)	137, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 139, 386
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	279, 354
LpnPI	CCDG	8 cut(s)	16, 43, 78, 105, 172, 201, 259, 268
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	376, 389
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	281, 356
MboI	GATC	2 cut(s)	279, 354
MboII	GAAGA	4 cut(s)	77, 265, 364, 382
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	184, 230
MnlI	CCTC	2 cut(s)	142, 353
MslI	CAYNNNNRTG	1 cut(s)	198
MspR9I	CCNGG	2 cut(s)	31, 93
MvaI	CCWGG	2 cut(s)	31, 93
MwoI	GCNNNNNNNGC	3 cut(s)	11, 139, 386
NdeII	GATC	2 cut(s)	279, 354
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	198
PagI	TCATGA	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	2 cut(s)	184, 230
PpsI	GAGTC	2 cut(s)	184, 230
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	29, 91
PspGI	CCWGG	2 cut(s)	29, 91
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	2 cut(s)	260, 272
RsaNI	GTAC	2 cut(s)	259, 271
RseI	CAYNNNNRTG	1 cut(s)	198
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	2 cut(s)	279, 354
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	2 cut(s)	184, 230
ScrFI	CCNGG	2 cut(s)	31, 93
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	5 cut(s)	123, 135, 153, 278, 306
SfaNI	GCATC	2 cut(s)	376, 389
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	2 cut(s)	5, 49
StyD4I	CCNGG	2 cut(s)	29, 91
StyI	CCWWGG	2 cut(s)	300, 375
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	68
TatI	WGTACW	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	28, 77
TspGWI	ACGGA	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.