Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Reverse (-)

19099819 .. 19102042

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGGACAACAAGGCTGTGACGATCCGCACCCGGAAGTTCATGACCAACCGTCTCCTCTCCAGGAAGCAATTCGTTATCGATGTTCTTCATCCAGGAAGACCCAATGTTTCTAAGACTGAGCTAAAGGAGAAACTGGCAAGGATGTATGAAGTGAAGGATACAAACTCTATCTTTGTGTTCAAGTTCCGCACCCATTTTGGAGGGGGAAAGTCCACTGGTTTTGGCCTGATTTATGATTCTGTAGAGAATGCAAAGAAGTTTGAGCCCAAGTACCGATTGATCAGGAATGGGCTGGACACTAAGGTGGCAAAGTCAAGGAAGCAACTGAAAGAACGGAAGAACAGAGCTAAGAAGATTCGCGGAGTGAAGAAGACCAAGGCCGGTGACGCTGCCAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

136

Amino Acids

15.57

Weight (kDa)

10.81

Isoelectric Point (pI)

13.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 98	5e-40	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	363
AciI	CCGC	4 cut(s)	5, 28, 190, 363
AclWI	GGATC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	184
AhdI	GACNNNNNGTC	1 cut(s)	51
AjnI	CCWGG	2 cut(s)	62, 94
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	2 cut(s)	124, 350
AluI	AGCT	2 cut(s)	124, 350
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	226, 381
ApeKI	GCWGC	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	106, 380
BbvI	GCAGC	1 cut(s)	379
BciT130I	CCWGG	2 cut(s)	64, 96
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	34, 64, 96
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmrFI	CCNGG	3 cut(s)	34, 64, 96
BpiI	GAAGAC	2 cut(s)	106, 380
BpmI	CTGGAG	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	141, 223
BseBI	CCWGG	2 cut(s)	64, 96
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	2 cut(s)	91, 150
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	141, 223
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	228, 383
BshVI	ATCGAT	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	34, 384
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	228, 383
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	24, 282
BspACI	CCGC	4 cut(s)	5, 28, 190, 363
BspANI	GGCC	2 cut(s)	228, 383
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	42
BspPI	GGATC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	141, 223
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	24, 282
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	64, 96
Bst4CI	ACNGT	1 cut(s)	53
BstDEI	CTNAG	4 cut(s)	114, 120, 303, 351
BstF5I	GGATG	2 cut(s)	91, 150
BstFNI	CGCG	1 cut(s)	363
BstKTI	GATC	2 cut(s)	27, 285
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	24, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	2 cut(s)	64, 96
BstSCI	CCNGG	3 cut(s)	32, 62, 94
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	2 cut(s)	106, 380
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	228, 383
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	91, 150
BtsIMutI	CAGTG	1 cut(s)	216
CciI	TCATGA	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	81
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	7 cut(s)	17, 124, 228, 268, 295, 350, 383
CviKI_1	RGCY	7 cut(s)	17, 124, 228, 268, 295, 350, 383
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	114, 120, 303, 351
DpnI	GATC	2 cut(s)	26, 284
DpnII	GATC	2 cut(s)	24, 282
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	62, 94
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 150, 237
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	78, 157
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	228, 383
HapII	CCGG	2 cut(s)	34, 384
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	2 cut(s)	239, 358
HpaII	CCGG	2 cut(s)	34, 384
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	43, 286
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	4 cut(s)	114, 120, 303, 351
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	24, 282
Lsp1109I	GCAGC	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	19, 386
MalI	GATC	2 cut(s)	26, 284
MboI	GATC	2 cut(s)	24, 282
MboII	GAAGA	6 cut(s)	80, 111, 352, 367, 382, 385
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	2 cut(s)	68, 197
MroXI	GAANNNNTTC	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	2 cut(s)	34, 384
MspR9I	CCNGG	3 cut(s)	34, 64, 96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	64, 96
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	24, 282
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	19, 386
OliI	CACNNNNGTG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	239, 358
PfoI	TCCNGGA	2 cut(s)	62, 94
PkrI	GCNGC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	62, 94
PspGI	CCWGG	2 cut(s)	62, 94
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	305
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	24, 282
ScrFI	CCNGG	3 cut(s)	34, 64, 96
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	3 cut(s)	126, 309, 352
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	4 cut(s)	5, 28, 190, 363
StyD4I	CCNGG	3 cut(s)	32, 62, 94
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	239, 358
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	19, 386
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	2 cut(s)	19, 386
TspDTI	ATGAA	3 cut(s)	31, 80, 165
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.