Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004025

Physical Location & Seq

Genomic Coordinates Forward (+)

203590 .. 205604

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCGATAACAAAGCCGTGACCGTCCGTACCAGGAAGTTCATGACAAATCGTCTTCTCTCCAGGAAGCAATTCGTCATCGATGTTTTGCATCCAGGAAGACCAAACGTCTCCAAGGCTGAGCTGAAGGAGAAACTGGCAAGGATGTACGAAGTCAAGGATACAAATGCCATCTTTGTTTTCAAGTTCCGCACCCATTTTGGAGGGGGTAAATCCACTGGTTTTGGCCTGATTTATGATTCTGTAGAGAATGCCAAGAAGTTTGAGCCAAAGTACAGGCTGATCAGGAATGGACTGGACACTAAGGTGACAAAGTCAAGGAAGCAAATCAAGGAAAGGAAGAACCGAGCCAAGAAGATCCGTGGAGTCAAGAAGACCAAGGCTGGTGATGCTGCCAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030312 GO:0030490 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S24e

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

10.81

Isoelectric Point (pI)

11.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S24e	PF01282	7 - 98	1.9e-39	Ribosomal protein S24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04920 AT5G28060
fragaria_vesca	FvH4_1g00370 FvH4_2g23340
malus_domestica	MD03G1262800.v1.1 MD04G1220300.v1.1 MD12G1236700.v1.1 MD15G1146300.v1.1
prunus_persica	Prupe.6G339300_v2.0.a1 Prupe.7G268100_v2.0.a1 Prupe.8G239100_v2.0.a1
pyrus_communis	pycom03g21030 pycom04g19500 pycom11g25100 pycom15g13130
rosa_chinensis	RchiOBHm_Chr3g0452141 RchiOBHm_Chr6g0290761
rosa_laevigata	RLG00000012180 RLG00000025625
rosa_multiflora	Rmu_sc0000043.1_g000022 Rmu_sc0020870.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429260 Rroxscaffold_7G00176750
rosa_rugosa	Rorug02G0638500 Rorug06G0214600
rosa_samantha	Rh3AG040500 Rh3BG042000 Rh3CG040400 Rh3DG041300 Rh6AG325100 Rh6CG338400
rosa_wichuraiana	Rw3G003080 Rw6G028230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	3 cut(s)	31, 149, 275
AgsI	TTSAA	1 cut(s)	184
AhdI	GACNNNNNGTC	2 cut(s)	51, 107
AjnI	CCWGG	3 cut(s)	32, 62, 94
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	2 cut(s)	3, 226
ApeKI	GCWGC	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	319, 398
BbsI	GAAGAC	3 cut(s)	47, 106, 380
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	3 cut(s)	34, 64, 96
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	1 cut(s)	393
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	3 cut(s)	34, 64, 96
BmeRI	GACNNNNNGTC	2 cut(s)	51, 107
BmrFI	CCNGG	3 cut(s)	34, 64, 96
BmsI	GCATC	2 cut(s)	100, 379
BpiI	GAAGAC	3 cut(s)	47, 106, 380
BpmI	CTGGAG	1 cut(s)	46
Bpu1102I	GCTNAGC	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	114, 361, 378
Bse1I	ACTGG	3 cut(s)	141, 223, 300
BseBI	CCWGG	3 cut(s)	34, 64, 96
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	114, 361, 378
BseGI	GGATG	2 cut(s)	91, 150
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	3 cut(s)	141, 223, 300
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	5, 228
BshVI	ATCGAT	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	5, 228
Bsp143I	GATC	2 cut(s)	282, 357
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	2 cut(s)	5, 228
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	42
BspPI	GGATC	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	141, 223, 300
BssECI	CCNNGG	3 cut(s)	114, 361, 378
BssMI	GATC	2 cut(s)	282, 357
BssT1I	CCWWGG	2 cut(s)	114, 378
Bst2UI	CCWGG	3 cut(s)	34, 64, 96
Bst4CI	ACNGT	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	120, 303
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	91, 150
BstKTI	GATC	2 cut(s)	285, 360
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	282, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	3 cut(s)	34, 64, 96
BstSCI	CCNGG	3 cut(s)	32, 62, 94
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	3 cut(s)	47, 106, 380
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	5, 228
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	91, 150
BtsIMutI	CAGTG	1 cut(s)	216
CciI	TCATGA	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	3 cut(s)	30, 148, 274
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	9 cut(s)	5, 17, 119, 124, 228, 268, 280, 350, 383
CviKI_1	RGCY	9 cut(s)	5, 17, 119, 124, 228, 268, 280, 350, 383
CviQI	GTAC	3 cut(s)	30, 148, 274
DdeI	CTNAG	2 cut(s)	120, 303
DpnI	GATC	2 cut(s)	284, 359
DpnII	GATC	2 cut(s)	282, 357
DriI	GACNNNNNGTC	2 cut(s)	51, 107
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	2 cut(s)	51, 107
Eco130I	CCWWGG	2 cut(s)	114, 378
Eco57I	CTGAAG	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	32, 62, 94
EcoT14I	CCWWGG	2 cut(s)	114, 378
ErhI	CCWWGG	2 cut(s)	114, 378
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 237
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	78, 157
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	5, 228
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	2 cut(s)	239, 366
HphI	GGTGA	2 cut(s)	319, 398
Hpy188III	TCNNGA	3 cut(s)	43, 286, 370
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	2 cut(s)	120, 303
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	282, 357
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	100, 379
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	19, 307
MalI	GATC	2 cut(s)	284, 359
MboI	GATC	2 cut(s)	282, 357
MboII	GAAGA	5 cut(s)	47, 111, 352, 367, 385
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	305
MspR9I	CCNGG	3 cut(s)	34, 64, 96
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	34, 64, 96
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	2 cut(s)	282, 357
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	19, 307
OliI	CACNNNNGTG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	313
PfoI	TCCNGGA	2 cut(s)	62, 94
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	32, 62, 94
PspGI	CCWGG	3 cut(s)	32, 62, 94
PsuI	RGATCY	1 cut(s)	357
PsyI	GACNNNGTC	1 cut(s)	313
RsaI	GTAC	3 cut(s)	31, 149, 275
RsaNI	GTAC	3 cut(s)	30, 148, 274
RseI	CAYNNNNRTG	1 cut(s)	305
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	282, 357
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	3 cut(s)	34, 64, 96
SetI	ASST	3 cut(s)	111, 126, 309
SfaNI	GCATC	2 cut(s)	100, 379
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	190
StyD4I	CCNGG	3 cut(s)	32, 62, 94
StyI	CCWWGG	2 cut(s)	114, 378
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	239
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	19, 307
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	2 cut(s)	19, 307
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	2 cut(s)	17, 350
TspRI	CASTG	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.