Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010204

Physical Location & Seq

Genomic Coordinates Reverse (-)

3090610 .. 3097302

Gene Structure 6693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGAAGTTAAAAGCAGTGTTGCGGAAAACCATTCTGATCACAACCACCACCCTTCACATTCCTATAGCAACCACCACCATGGAAGTTTTCCTTCCAAGTTGGCTCTCATTATCATCATTTCCATCGTCTCTGTCACGGTCATTCTTGCTATAACCCTCATCATACTGTTGCTCAGACGGCTCAAATCAGCCAAAACCAGTGGCAGCCACATTGATGATGAGAAGGGAAGCTTGAACAATACAAGTTGCAGGTCCATTGTTCAAAACTCCATGAACTTCGGTTGTAGTCCAGATGTGAAGGGCGGGTGTCTTCAAGGAGGGAACTTGGGAAGGTCAATGAGGACACCAGGGGCAATCACAACACCAACTAGATACAGAGGAGTTCAAGTGTTGTCATACAAGGAACTCGAGGAGGCCACCAATAAGTTTAGCGAGGCAAATGTGATGGGCCGTGGAGGGTTTGGAGTGGTGTATAGGGGAGTTCTTCGTGATGGAACCATGGCAGCCATTAAGATGCTGCACAGGGAAGGAAGGCAAGGGGAGCGTGCTTTCAGGCTTGAGGTTGATCTGCTAAGCCGATTGCAGTCTCCATACTTGGTGGAGCTACTTGGTTATTGTGCTGACCAGCATCATAGGCTGCTTGTATTTGAATGCATGCACAATGGTACTCTTCAAGACCATCTCCATTCTCGAAACCATCAGCAGCCGTTGGATTGGGGTACGCGATTGAGGATAGCACTCGACTGTGCCAAGGCCCTTGAGTTCCTCCATGAGAGAAACATCCCATCTGTTATTCACCGTGACTTCAAGTGCAGCAATGTTCTTCTTGATGAAAACTTCCGGGCCAAGGTGTCTGATTTCGGGTTGGCCAAGATGGCTTCAGACAAGATTAACGGGCAGGTTTCGACACGAGTGCTTGGGACCACTGGATATCTAGCACCAGAGTATGCCTCAACTGGAAAGCTTACAACAAAATCAGATGTTTACAGCTACGGCGTGGTTCTTTTAGAGCTGTTGACAGGGCGAGTACCAGTAGATACCAAGCGGCCTTCTGGAGAGCATGTCCTTGTCTCATGGGCTCTTCCAAGGCTAACTAACAGAGAAAAAGTAGTGCAAATGGTTGATCCAGCTCTTAAAGGGCAATACTCAAAGAGGGATCTCATTCAGGTAGCAGCTATTGCAGCAATGTGTGTGCAGCCAGAAGCCGAATATCGGCCTCTAATGGCTGATGTCGTACCCTCTCTAATTCCACTGGTTAAAAACTCCTCTTATGTTGGTTCCTCTGGCTCCTCTAGATTTCAAGTTCAAGTAGCAAGTCCAAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

443

Amino Acids

48.87

Weight (kDa)

9.29

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	145 - 350	1.4e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	147 - 414	5.2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54820 AT1G54820 AT1G54820 AT1G54820
fragaria_vesca	FvH4_6g05470
malus_domestica	MD04G1208400.v1.1 MD12G1222300.v1.1
prunus_persica	Prupe.5G030100_v2.0.a1 Prupe.6G329300_v2.0.a1
pyrus_communis	pycom04g18450
rosa_chinensis	RchiOBHm_Chr3g0454241
rosa_laevigata	RLG00000025473
rosa_multiflora	Rmu_sc0026184.1_g000003 Rmu_sc0038077.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437020 Rroxscaffold_6G00425340
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057000 Rh3BG058400 Rh3CG057600 Rh3DG058900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	240, 889
AccII	CGCG	1 cut(s)	724
AciI	CCGC	3 cut(s)	23, 303, 1045
AclWI	GGATC	2 cut(s)	1118, 1164
AcoI	YGGCCR	1 cut(s)	867
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	4 cut(s)	667, 721, 1029, 1236
AfiI	CCNNNNNNNGG	2 cut(s)	847, 1212
AgsI	TTSAA	9 cut(s)	235, 263, 314, 386, 650, 674, 808, 1301, 1307
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	7 cut(s)	231, 604, 964, 990, 1012, 1130, 1175
AluI	AGCT	7 cut(s)	231, 604, 964, 990, 1012, 1130, 1175
Alw26I	GTCTC	3 cut(s)	133, 591, 1075
AlwI	GGATC	2 cut(s)	1118, 1164
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	7 cut(s)	414, 448, 753, 843, 867, 1046, 1214
ApeKI	GCWGC	9 cut(s)	204, 503, 517, 637, 703, 813, 1172, 1181, 1195
AspS9I	GGNCC	5 cut(s)	252, 448, 754, 843, 921
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	1 cut(s)	788
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	252, 921
BalI	TGGCCA	1 cut(s)	869
BanII	GRGCYC	1 cut(s)	1081
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	9 cut(s)	216, 504, 515, 624, 715, 825, 1184, 1193, 1207
BccI	CCATC	7 cut(s)	131, 439, 485, 687, 705, 793, 868
BceAI	ACGGC	4 cut(s)	194, 435, 691, 1009
BcgI	CGANNNNNNTGC	2 cut(s)	895, 929
BciT130I	CCWGG	1 cut(s)	348
BclI	TGATCA	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	3 cut(s)	133, 591, 1075
BfaI	CTAG	3 cut(s)	369, 935, 1293
BfmI	CTRYAG	1 cut(s)	64
BfuAI	ACCTGC	2 cut(s)	240, 889
BglI	GCCNNNNNGGC	1 cut(s)	875
BlpI	GCTNAGC	1 cut(s)	572
Bme1390I	CCNGG	2 cut(s)	348, 842
Bme18I	GGWCC	2 cut(s)	252, 921
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	5 cut(s)	252, 448, 754, 843, 921
BmiI	GGNNCC	4 cut(s)	496, 922, 1279, 1288
BmrFI	CCNGG	2 cut(s)	348, 842
BmsI	GCATC	2 cut(s)	504, 637
BpiI	GAAGAC	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	935, 967
BpmI	CTGGAG	1 cut(s)	1074
Bpu1102I	GCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	2 cut(s)	578, 779
BpuMI	CCSGG	1 cut(s)	842
BsaJI	CCNNGG	8 cut(s)	79, 347, 451, 498, 750, 846, 1085, 1319
BsaXI	ACNNNNNCTCC	4 cut(s)	372, 402, 1047, 1077
Bsc4I	CCNNNNNNNGG	2 cut(s)	847, 1212
Bse1I	ACTGG	5 cut(s)	198, 931, 961, 1031, 1257
Bse3DI	GCAATG	2 cut(s)	823, 1191
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	8 cut(s)	79, 347, 451, 498, 750, 846, 1085, 1319
BseGI	GGATG	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	847, 1212
BseMI	GCAATG	2 cut(s)	823, 1191
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	5 cut(s)	198, 931, 961, 1031, 1257
BseRI	GAGGAG	4 cut(s)	393, 425, 1255, 1279
BseXI	GCAGC	9 cut(s)	216, 504, 515, 624, 715, 825, 1184, 1193, 1207
BsgI	GTGCAG	3 cut(s)	503, 832, 1214
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	7 cut(s)	416, 450, 755, 845, 869, 1048, 1216
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	841
BslFI	GGGAC	1 cut(s)	934
BslI	CCNNNNNNNGG	2 cut(s)	847, 1212
BsmAI	GTCTC	3 cut(s)	133, 591, 1075
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	934
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	7 cut(s)	416, 450, 755, 845, 869, 1048, 1216
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	1081
Bsp143I	GATC	4 cut(s)	37, 565, 1123, 1156
Bsp1720I	GCTNAGC	1 cut(s)	572
Bsp19I	CCATGG	2 cut(s)	79, 498
BspACI	CCGC	3 cut(s)	23, 303, 1045
BspANI	GGCC	7 cut(s)	416, 450, 755, 845, 869, 1048, 1216
BspCNI	CTCAG	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	4 cut(s)	496, 922, 1279, 1288
BspMI	ACCTGC	2 cut(s)	240, 889
BspPI	GGATC	2 cut(s)	1118, 1164
BspQI	GCTCTTC	1 cut(s)	1086
BsrDI	GCAATG	2 cut(s)	823, 1191
BsrI	ACTGG	5 cut(s)	198, 931, 961, 1031, 1257
BssECI	CCNNGG	8 cut(s)	79, 347, 451, 498, 750, 846, 1085, 1319
BssMI	GATC	4 cut(s)	37, 565, 1123, 1156
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	6 cut(s)	79, 498, 750, 846, 1085, 1319
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	4 cut(s)	139, 168, 746, 800
Bst6I	CTCTTC	2 cut(s)	675, 1086
BstAPI	GCANNNNNTGC	1 cut(s)	1178
BstC8I	GCNNGC	2 cut(s)	546, 656
BstDEI	CTNAG	2 cut(s)	173, 572
BstDSI	CCRYGG	3 cut(s)	79, 451, 498
BstF5I	GGATG	1 cut(s)	780
BstFNI	CGCG	1 cut(s)	724
BstKTI	GATC	4 cut(s)	40, 568, 1126, 1159
BstMAI	GTCTC	3 cut(s)	133, 591, 1075
BstMBI	GATC	4 cut(s)	37, 565, 1123, 1156
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 541, 634, 875, 1178, 1181
BstNI	CCWGG	1 cut(s)	348
BstNSI	RCATGY	2 cut(s)	658, 1064
BstSCI	CCNGG	2 cut(s)	346, 840
BstSFI	CTRYAG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	9 cut(s)	216, 504, 515, 624, 715, 825, 1184, 1193, 1207
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	1156
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	1156
BsuRI	GGCC	7 cut(s)	416, 450, 755, 845, 869, 1048, 1216
BtgI	CCRYGG	3 cut(s)	79, 451, 498
BtsCI	GGATG	1 cut(s)	780
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	4 cut(s)	22, 205, 924, 1250
BveI	ACCTGC	2 cut(s)	240, 889
Cac8I	GCNNGC	2 cut(s)	546, 656
Cfr13I	GGNCC	5 cut(s)	252, 448, 754, 843, 921
Csp6I	GTAC	4 cut(s)	666, 720, 1028, 1235
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	7 cut(s)	80, 271, 499, 655, 770, 1061, 1074
CviQI	GTAC	4 cut(s)	666, 720, 1028, 1235
DdeI	CTNAG	2 cut(s)	173, 572
DpnI	GATC	4 cut(s)	39, 567, 1125, 1158
DpnII	GATC	4 cut(s)	37, 565, 1123, 1156
EaeI	YGGCCR	1 cut(s)	867
Eam1104I	CTCTTC	2 cut(s)	675, 1086
EarI	CTCTTC	2 cut(s)	675, 1086
Eco130I	CCWWGG	6 cut(s)	79, 498, 750, 846, 1085, 1319
Eco24I	GRGCYC	1 cut(s)	1081
Eco32I	GATATC	1 cut(s)	932
Eco47I	GGWCC	2 cut(s)	252, 921
Eco57I	CTGAAG	1 cut(s)	864
Eco88I	CYCGRG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	346
EcoRV	GATATC	1 cut(s)	932
EcoT14I	CCWWGG	6 cut(s)	79, 498, 750, 846, 1085, 1319
EcoT22I	ATGCAT	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	1081
ErhI	CCWWGG	6 cut(s)	79, 498, 750, 846, 1085, 1319
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	7 cut(s)	83, 274, 502, 658, 773, 1064, 1077
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 215, 247
FaqI	GGGAC	1 cut(s)	934
FatI	CATG	7 cut(s)	79, 270, 498, 654, 769, 1060, 1073
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	37
FokI	GGATG	1 cut(s)	767
FriOI	GRGCYC	1 cut(s)	1081
FspBI	CTAG	3 cut(s)	369, 935, 1293
GsuI	CTGGAG	1 cut(s)	1074
HaeIII	GGCC	7 cut(s)	416, 450, 755, 845, 869, 1048, 1216
HapII	CCGG	1 cut(s)	841
Hin1II	CATG	7 cut(s)	83, 274, 502, 658, 773, 1064, 1077
HincII	GTYRAC	1 cut(s)	1017
HindII	GTYRAC	1 cut(s)	1017
HindIII	AAGCTT	2 cut(s)	229, 962
HpaII	CCGG	1 cut(s)	841
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	2 cut(s)	985, 1017
Hpy188I	TCNGA	5 cut(s)	37, 176, 856, 883, 979
Hpy188III	TCNNGA	7 cut(s)	290, 488, 674, 690, 827, 1053, 1293
Hpy8I	GTNNAC	2 cut(s)	985, 1017
HpyAV	CCTTC	8 cut(s)	63, 102, 217, 292, 324, 521, 525, 1059
HpyCH4III	ACNGT	4 cut(s)	139, 168, 746, 800
HpyCH4V	TGCA	9 cut(s)	249, 520, 583, 654, 658, 813, 1114, 1181, 1195
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 541, 634, 875, 1178, 1181
HpyF3I	CTNAG	2 cut(s)	173, 572
Hsp92II	CATG	7 cut(s)	83, 274, 502, 658, 773, 1064, 1077
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	37, 565, 1123, 1156
LguI	GCTCTTC	1 cut(s)	1086
LmnI	GCTCC	3 cut(s)	541, 601, 1292
Lsp1109I	GCAGC	9 cut(s)	216, 504, 515, 624, 715, 825, 1184, 1193, 1207
LweI	GCATC	2 cut(s)	504, 637
MaeI	CTAG	3 cut(s)	369, 935, 1293
MaeIII	GTNAC	2 cut(s)	133, 800
MalI	GATC	4 cut(s)	39, 567, 1125, 1158
MboI	GATC	4 cut(s)	37, 565, 1123, 1156
MboII	GAAGA	5 cut(s)	302, 476, 662, 815, 1073
MflI	RGATCY	1 cut(s)	1156
MhlI	GDGCHC	1 cut(s)	1081
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	1 cut(s)	1245
MluNI	TGGCCA	1 cut(s)	869
MmeI	TCCRAC	1 cut(s)	690
Mox20I	TGGCCA	1 cut(s)	869
Mph1103I	ATGCAT	1 cut(s)	656
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	5 cut(s)	9, 510, 891, 1134, 1257
MslI	CAYNNNNRTG	3 cut(s)	78, 213, 512
Msp20I	TGGCCA	1 cut(s)	869
MspI	CCGG	1 cut(s)	841
MspR9I	CCNGG	2 cut(s)	348, 842
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	6 cut(s)	178, 541, 634, 875, 1178, 1181
NciI	CCSGG	1 cut(s)	842
NcoI	CCATGG	2 cut(s)	79, 498
NdeII	GATC	4 cut(s)	37, 565, 1123, 1156
NlaIII	CATG	7 cut(s)	83, 274, 502, 658, 773, 1064, 1077
NlaIV	GGNNCC	4 cut(s)	496, 922, 1279, 1288
NmuCI	GTSAC	2 cut(s)	133, 800
NsiI	ATGCAT	1 cut(s)	656
NspI	RCATGY	2 cut(s)	658, 1064
PaeI	GCATGC	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	1086
PctI	GAATGC	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	4 cut(s)	496, 922, 1279, 1288
PspPI	GGNCC	5 cut(s)	252, 448, 754, 843, 921
PspXI	VCTCGAGB	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	1156
RsaI	GTAC	4 cut(s)	667, 721, 1029, 1236
RsaNI	GTAC	4 cut(s)	666, 720, 1028, 1235
RseI	CAYNNNNRTG	3 cut(s)	78, 213, 512
SapI	GCTCTTC	1 cut(s)	1086
SaqAI	TTAA	5 cut(s)	9, 510, 891, 1134, 1257
Sau3AI	GATC	4 cut(s)	37, 565, 1123, 1156
Sau96I	GGNCC	5 cut(s)	252, 448, 754, 843, 921
ScrFI	CCNGG	2 cut(s)	348, 842
SduI	GDGCHC	1 cut(s)	1081
SfaNI	GCATC	2 cut(s)	504, 637
SfcI	CTRYAG	1 cut(s)	64
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	2 cut(s)	252, 921
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	3 cut(s)	78, 213, 512
SmlI	CTYRAG	3 cut(s)	407, 557, 758
SmoI	CTYRAG	3 cut(s)	407, 557, 758
SphI	GCATGC	1 cut(s)	658
Sse9I	AATT	1 cut(s)	1245
SsiI	CCGC	3 cut(s)	23, 303, 1045
SspMI	CTAG	3 cut(s)	369, 935, 1293
StyD4I	CCNGG	2 cut(s)	346, 840
StyI	CCWWGG	6 cut(s)	79, 498, 750, 846, 1085, 1319
TaaI	ACNGT	4 cut(s)	139, 168, 746, 800
TaqI	TCGA	4 cut(s)	408, 691, 741, 905
TasI	AATT	1 cut(s)	1245
TauI	GCSGC	1 cut(s)	1048
Tru1I	TTAA	5 cut(s)	9, 510, 891, 1134, 1257
Tru9I	TTAA	5 cut(s)	9, 510, 891, 1134, 1257
TscAI	CASTG	4 cut(s)	22, 205, 931, 1257
TseFI	GTSAC	2 cut(s)	133, 800
TseI	GCWGC	9 cut(s)	204, 503, 517, 637, 703, 813, 1172, 1181, 1195
Tsp45I	GTSAC	2 cut(s)	133, 800
TspDTI	ATGAA	2 cut(s)	287, 846
TspRI	CASTG	4 cut(s)	22, 205, 931, 1257
VpaK11BI	GGWCC	2 cut(s)	252, 921
XbaI	TCTAGA	1 cut(s)	1292
XceI	RCATGY	2 cut(s)	658, 1064
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	3 cut(s)	369, 935, 1293
Zsp2I	ATGCAT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.