Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010204

Physical Location & Seq

Genomic Coordinates Reverse (-)

3980466 .. 3983142

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG058400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAAGTTGACACTGCTGTTGCGGAAAACCATACTGATCATAAACACCACCTTTCACATTCCTATAGCCACCACCACCATGGAAGTTTTCCTTCCAAGTTGGCTATCATTATCATCATTTCCATCGTCTTTGTCATGGTCGTTCTTGCTATAACCCTCATCATATTATTTCTCAGACGGCTCAAGTCAGCCAAAACTAGTGGTGGCGACATTGACGATGAGAAGGGCAGCTTGAACAATACAAGCTGCAGGTTCATTGCTCAAAACTCCATGAACTTCAACTCCAGCCCAGATGTGAAGGGCGGGTGCCTTCAAGGAGGGAACTTGGGAAGGTCAATGAGGACATCAGTGGCAATCACAACACCAACTAGATACAGAGGAGTCCAAGTGTTGTCATACAAGGAACTCGAGGAGGCCACTGATAAGTTTAGCGAGGCGAATGTGATAGGCCATGGAGGGTTTGGAGTGGTGTATAGGGGAGTCCTCCGTGATGGAACCATGGCGGCCATTAAGATGCTGCACAGGGAGGGAAGGCAAGGGGAGCGTGCTTTCAGGCTTGAGATAGCAGCTATTGCAGCAATGTGTGTGCAGCCAGAAGCTGAATATCGGCCTCTAATGACTGATGTCGTACCCTCTCTAATTCCACTGGTTAAAAACTCTTATGTTGGTTCCTCTGGCTCCTCTAGATTTCAAATTCAAGTAGTAAGTCCAAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

239

Amino Acids

26.23

Weight (kDa)

9.17

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54820 AT1G54820 AT1G54820 AT1G54820
fragaria_vesca	FvH4_6g05470
malus_domestica	MD04G1208400.v1.1 MD12G1222300.v1.1
prunus_persica	Prupe.5G030100_v2.0.a1 Prupe.6G329300_v2.0.a1
pyrus_communis	pycom04g18450
rosa_chinensis	RchiOBHm_Chr3g0454241
rosa_laevigata	RLG00000025473
rosa_multiflora	Rmu_sc0026184.1_g000003 Rmu_sc0038077.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437020 Rroxscaffold_6G00425340
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057000 Rh3BG058400 Rh3CG057600 Rh3DG058900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	306
AciI	CCGC	3 cut(s)	23, 303, 503
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	693
AfaI	GTAC	1 cut(s)	630
AgsI	TTSAA	5 cut(s)	235, 280, 314, 692, 698
AhlI	ACTAGT	1 cut(s)	197
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	231, 246, 569, 599
AluI	AGCT	4 cut(s)	231, 246, 569, 599
AlwNI	CAGNNNCTG	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	4 cut(s)	414, 448, 504, 608
ApeKI	GCWGC	6 cut(s)	228, 246, 517, 566, 575, 589
ApoI	RAATTY	1 cut(s)	693
AvaI	CYCGRG	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	306
BbvI	GCAGC	6 cut(s)	233, 240, 504, 578, 587, 601
BccI	CCATC	2 cut(s)	131, 485
BceAI	ACGGC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	37
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	3 cut(s)	198, 369, 684
BfmI	CTRYAG	2 cut(s)	64, 247
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	7 cut(s)	229, 247, 504, 518, 567, 576, 590
BlsI	GCNGC	7 cut(s)	230, 248, 505, 519, 568, 577, 591
BmeT110I	CYCGRG	1 cut(s)	407
BmiI	GGNNCC	4 cut(s)	308, 496, 670, 679
BmsI	GCATC	1 cut(s)	504
BoxI	GACNNNNGTC	1 cut(s)	623
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	2 cut(s)	167, 578
BsaJI	CCNNGG	4 cut(s)	79, 451, 498, 710
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 372, 402
Bse1I	ACTGG	1 cut(s)	651
Bse3DI	GCAATG	2 cut(s)	255, 585
BseDI	CCNNGG	4 cut(s)	79, 451, 498, 710
BseMI	GCAATG	2 cut(s)	255, 585
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	3 cut(s)	393, 425, 670
BseXI	GCAGC	6 cut(s)	233, 240, 504, 578, 587, 601
BsgI	GTGCAG	2 cut(s)	503, 608
BshFI	GGCC	4 cut(s)	416, 450, 506, 610
BshNI	GGYRCC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	407
BsnI	GGCC	4 cut(s)	416, 450, 506, 610
BsoBI	CYCGRG	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	37
Bsp19I	CCATGG	3 cut(s)	79, 451, 498
BspACI	CCGC	3 cut(s)	23, 303, 503
BspANI	GGCC	4 cut(s)	416, 450, 506, 610
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	4 cut(s)	308, 496, 670, 679
BspMAI	CTGCAG	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	255, 585
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	4 cut(s)	79, 451, 498, 710
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	4 cut(s)	79, 451, 498, 710
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	1 cut(s)	173
BstDSI	CCRYGG	3 cut(s)	79, 451, 498
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	541, 572, 575
BstPAI	GACNNNNGTC	1 cut(s)	623
BstSFI	CTRYAG	2 cut(s)	64, 247
BstV1I	GCAGC	6 cut(s)	233, 240, 504, 578, 587, 601
BstXI	CCANNNNNNTGG	1 cut(s)	80
BsuRI	GGCC	4 cut(s)	416, 450, 506, 610
BtgI	CCRYGG	3 cut(s)	79, 451, 498
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 354, 417, 644
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	546
CaiI	CAGNNNCTG	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	629
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	5 cut(s)	80, 136, 271, 452, 499
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	504
Eco130I	CCWWGG	4 cut(s)	79, 451, 498, 710
Eco88I	CYCGRG	1 cut(s)	407
EcoT14I	CCWWGG	4 cut(s)	79, 451, 498, 710
ErhI	CCWWGG	4 cut(s)	79, 451, 498, 710
FaeI	CATG	5 cut(s)	83, 139, 274, 455, 502
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 215, 247
FatI	CATG	5 cut(s)	79, 135, 270, 451, 498
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	7 cut(s)	229, 247, 504, 518, 567, 576, 590
Fsp4HI	GCNGC	7 cut(s)	229, 247, 504, 518, 567, 576, 590
FspBI	CTAG	3 cut(s)	198, 369, 684
GluI	GCNGC	7 cut(s)	229, 247, 504, 518, 567, 576, 590
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	416, 450, 506, 610
Hin1II	CATG	5 cut(s)	83, 139, 274, 455, 502
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	381, 480
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	684
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	6 cut(s)	102, 217, 292, 320, 324, 525
HpyCH4V	TGCA	4 cut(s)	249, 520, 575, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	541, 572, 575
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	5 cut(s)	83, 139, 274, 455, 502
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	541, 683
LpnPI	CCDG	8 cut(s)	235, 298, 303, 508, 538, 606, 632, 660
Lsp1109I	GCAGC	6 cut(s)	233, 240, 504, 578, 587, 601
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	3 cut(s)	198, 369, 684
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MluCI	AATT	2 cut(s)	639, 693
MlyI	GAGTC	2 cut(s)	390, 489
MseI	TTAA	2 cut(s)	510, 651
MslI	CAYNNNNRTG	2 cut(s)	78, 512
MwoI	GCNNNNNNNGC	3 cut(s)	541, 572, 575
NcoI	CCATGG	3 cut(s)	79, 451, 498
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	5 cut(s)	83, 139, 274, 455, 502
NlaIV	GGNNCC	4 cut(s)	308, 496, 670, 679
PaeR7I	CTCGAG	1 cut(s)	407
PkrI	GCNGC	7 cut(s)	230, 248, 505, 519, 568, 577, 591
PleI	GAGTC	2 cut(s)	389, 488
PpsI	GAGTC	2 cut(s)	389, 488
PshAI	GACNNNNGTC	1 cut(s)	623
PspN4I	GGNNCC	4 cut(s)	308, 496, 670, 679
PspXI	VCTCGAGB	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	2 cut(s)	78, 512
SaqAI	TTAA	2 cut(s)	510, 651
SatI	GCNGC	7 cut(s)	229, 247, 504, 518, 567, 576, 590
Sau3AI	GATC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	390, 489
SetI	ASST	8 cut(s)	54, 233, 248, 254, 335, 571, 601, 716
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	2 cut(s)	64, 247
Sfr274I	CTCGAG	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	78, 512
SmlI	CTYRAG	3 cut(s)	182, 407, 557
SmoI	CTYRAG	3 cut(s)	182, 407, 557
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	2 cut(s)	639, 693
SsiI	CCGC	3 cut(s)	23, 303, 503
SspMI	CTAG	3 cut(s)	198, 369, 684
StyI	CCWWGG	4 cut(s)	79, 451, 498, 710
TaqI	TCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	639, 693
TauI	GCSGC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	510, 651
Tru9I	TTAA	2 cut(s)	510, 651
TscAI	CASTG	4 cut(s)	19, 354, 424, 651
TseI	GCWGC	6 cut(s)	228, 246, 517, 566, 575, 589
TspDTI	ATGAA	2 cut(s)	244, 287
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	4 cut(s)	19, 354, 424, 651
XapI	RAATTY	1 cut(s)	693
XbaI	TCTAGA	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	2 cut(s)	77, 458
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	3 cut(s)	198, 369, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.