Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038077.1

Orthogroup ID

OG0010204

Physical Location & Seq

Genomic Coordinates Reverse (-)

5007 .. 7816

Gene Structure 2810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038077.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

atgaccatcctacctagaagggaaacccaaccccaaccaccccccccggttaccatatacaacacacaactctttccttctgtgtcgctcgctgccattttcttccagtttgcattgctctttgtgctcatggaagttgacactactgttgcggaaaaccatactgatcataaacaccacctttcatattcctatagccaccaccaccatggaagttttccttccaatttggctatcattatcatcatttccatcgtctttgtcatggtcgttcttgctataaccctcatcatattatttctcagacggctcaagtcagccaaaactagtggtggcgacattgacgatgagaagggcagcttgaacaatacaagctgcaggttcattgctcaaaactccatgaacttcaactccagcccagatgtgaagggcgggtgccttcaaggagggaacttgggaaggtcaatgaggacatcagtggcaatcacaacaccaactagatacagaggagtccaagtgttgtcatacaaggaactcgaggaggccactgataagtttagcgaggcgaatgtgataggccatggagggtttggagtggtgtataggggagtcctccgtgatggaaccatggcggccattaagatgctgcacagggagggaaggcaaggggagcgtgctttcaggcttgaggttgatctactaagccgattgcagtctccgtacttggtggagctacttggttattgtgctgaccagcatcataggctccttgtattcgaatgcatggccaatggtactcttcaacaccatcttcattctagaaaccatcagcagccgttggattggggtacccgattgaggatagccctcgactgtgccaaggcccttgagttcctccatgagcaaaacatcccatctgttatacaccgtgacttcaagtgcagcaatattcttctagatcaaaacttccgtgccaaggtgtctgatttcggattggccaagatggcttccgacaagattaacggtcaggtttcgacacgagtgcttgggaccacaggatatctagctccagagtatgcctcaactggaaagcttactacaaaatcagatgtttatagctacggcgtggttcttttagagctgttaacagggcgagtgccagtagataccaagcggccttctggagagcacgtccttgtctcatgggctcttccaaggctaactaacagagaaaaagtagtgcaaatggttgatccagctcttaaagggcaatactcgaagagggatctcattcagatagcagctattgcagcaatgtgtgtgcagccagaagctgaatatcggcctctaatgactgatgttgtaccctctctaattccactggttaaaaactcttatgttggttcctctggctcctctagatttcaaattcaagtagtaagtccaaggtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

484

Amino Acids

53.91

Weight (kDa)

9.1

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54820 AT1G54820 AT1G54820 AT1G54820
fragaria_vesca	FvH4_6g05470
malus_domestica	MD04G1208400.v1.1 MD12G1222300.v1.1
prunus_persica	Prupe.5G030100_v2.0.a1 Prupe.6G329300_v2.0.a1
pyrus_communis	pycom04g18450
rosa_chinensis	RchiOBHm_Chr3g0454241
rosa_laevigata	RLG00000025473
rosa_multiflora	Rmu_sc0026184.1_g000003 Rmu_sc0038077.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437020 Rroxscaffold_6G00425340
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057000 Rh3BG058400 Rh3CG057600 Rh3DG058900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	369
Acc65I	GGTACC	1 cut(s)	848
AccB1I	GGYRCC	2 cut(s)	435, 848
AciI	CCGC	4 cut(s)	152, 432, 632, 1174
AclWI	GGATC	2 cut(s)	1247, 1293
AcoI	YGGCCR	3 cut(s)	633, 786, 996
AcsI	RAATTY	1 cut(s)	1428
AfaI	GTAC	4 cut(s)	722, 796, 850, 1365
AfiI	CCNNNNNNNGG	2 cut(s)	858, 976
AgsI	TTSAA	7 cut(s)	364, 409, 443, 803, 937, 1427, 1433
AhlI	ACTAGT	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	1192
AloI	GAACNNNNNNTCC	2 cut(s)	395, 427
Alw21I	GWGCWC	2 cut(s)	129, 1191
Alw26I	GTCTC	2 cut(s)	720, 1204
AlwI	GGATC	2 cut(s)	1247, 1293
AlwNI	CAGNNNCTG	1 cut(s)	1334
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	8 cut(s)	543, 577, 633, 786, 882, 996, 1175, 1343
ApeKI	GCWGC	9 cut(s)	92, 357, 375, 646, 832, 942, 1301, 1310, 1324
ApoI	RAATTY	1 cut(s)	1428
Asp718I	GGTACC	1 cut(s)	848
AspS9I	GGNCC	2 cut(s)	883, 1050
AsuC2I	CCSGG	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	777
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	1050
BalI	TGGCCA	2 cut(s)	788, 998
BanI	GGYRCC	2 cut(s)	435, 848
BanII	GRGCYC	1 cut(s)	1210
BauI	CACGAG	1 cut(s)	1038
Bbv12I	GWGCWC	2 cut(s)	129, 1191
BbvI	GCAGC	9 cut(s)	79, 362, 369, 633, 844, 954, 1313, 1322, 1336
BccI	CCATC	7 cut(s)	14, 260, 614, 816, 834, 922, 997
BceAI	ACGGC	3 cut(s)	323, 820, 1138
BcgI	CGANNNNNNTGC	2 cut(s)	1024, 1058
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	720, 1204
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	7 cut(s)	15, 327, 498, 819, 956, 1064, 1419
BfmI	CTRYAG	2 cut(s)	193, 376
BfuAI	ACCTGC	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	1004
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	1050
BmeT110I	CYCGRG	1 cut(s)	536
BmgBI	CACGTC	1 cut(s)	1192
BmgT120I	GGNCC	2 cut(s)	883, 1050
BmiI	GGNNCC	7 cut(s)	437, 625, 767, 850, 1051, 1405, 1414
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	633, 766
BplI	GAGNNNNNCTC	2 cut(s)	1064, 1096
BpmI	CTGGAG	3 cut(s)	397, 1053, 1203
Bpu14I	TTCGAA	1 cut(s)	777
BpuEI	CTTGAG	3 cut(s)	296, 707, 908
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	8 cut(s)	45, 208, 580, 627, 879, 975, 1214, 1445
BsaXI	ACNNNNNCTCC	6 cut(s)	395, 425, 501, 531, 1176, 1206
Bsc4I	CCNNNNNNNGG	2 cut(s)	858, 976
Bse1I	ACTGG	4 cut(s)	106, 1090, 1160, 1386
Bse3DI	GCAATG	3 cut(s)	113, 384, 1320
BseDI	CCNNGG	8 cut(s)	45, 208, 580, 627, 879, 975, 1214, 1445
BseGI	GGATG	2 cut(s)	6, 909
BseLI	CCNNNNNNNGG	2 cut(s)	858, 976
BseMI	GCAATG	3 cut(s)	113, 384, 1320
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	4 cut(s)	106, 1090, 1160, 1386
BseRI	GAGGAG	3 cut(s)	522, 554, 1405
BseXI	GCAGC	9 cut(s)	79, 362, 369, 633, 844, 954, 1313, 1322, 1336
BsgI	GTGCAG	3 cut(s)	632, 961, 1343
BshFI	GGCC	8 cut(s)	545, 579, 635, 788, 884, 998, 1177, 1345
BshNI	GGYRCC	2 cut(s)	435, 848
BsiHKAI	GWGCWC	2 cut(s)	129, 1191
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	1063
BslI	CCNNNNNNNGG	2 cut(s)	858, 976
BsmAI	GTCTC	2 cut(s)	720, 1204
BsmFI	GGGAC	1 cut(s)	1063
BsmI	GAATGC	1 cut(s)	785
BsnI	GGCC	8 cut(s)	545, 579, 635, 788, 884, 998, 1177, 1345
BsoBI	CYCGRG	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	777
Bsp1286I	GDGCHC	3 cut(s)	129, 1191, 1210
Bsp143I	GATC	5 cut(s)	166, 694, 958, 1252, 1285
Bsp19I	CCATGG	3 cut(s)	208, 580, 627
BspACI	CCGC	4 cut(s)	152, 432, 632, 1174
BspANI	GGCC	8 cut(s)	545, 579, 635, 788, 884, 998, 1177, 1345
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	7 cut(s)	437, 625, 767, 850, 1051, 1405, 1414
BspMAI	CTGCAG	1 cut(s)	380
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	2 cut(s)	1247, 1293
BspQI	GCTCTTC	1 cut(s)	1215
BspT104I	TTCGAA	1 cut(s)	777
BspT107I	GGYRCC	2 cut(s)	435, 848
BsrDI	GCAATG	3 cut(s)	113, 384, 1320
BsrI	ACTGG	4 cut(s)	106, 1090, 1160, 1386
BssECI	CCNNGG	8 cut(s)	45, 208, 580, 627, 879, 975, 1214, 1445
BssMI	GATC	5 cut(s)	166, 694, 958, 1252, 1285
BssSI	CACGAG	1 cut(s)	1038
BssT1I	CCWWGG	7 cut(s)	208, 580, 627, 879, 975, 1214, 1445
Bst2BI	CACGAG	1 cut(s)	1038
Bst4CI	ACNGT	4 cut(s)	148, 875, 929, 1025
Bst6I	CTCTTC	3 cut(s)	804, 1215, 1274
BstAPI	GCANNNNNTGC	1 cut(s)	1307
BstBI	TTCGAA	1 cut(s)	777
BstC8I	GCNNGC	2 cut(s)	90, 675
BstDEI	CTNAG	2 cut(s)	302, 701
BstDSI	CCRYGG	3 cut(s)	208, 580, 627
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	6, 909
BstKTI	GATC	5 cut(s)	169, 697, 961, 1255, 1288
BstMAI	GTCTC	2 cut(s)	720, 1204
BstMBI	GATC	5 cut(s)	166, 694, 958, 1252, 1285
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 670, 763, 1004, 1307, 1310
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	2 cut(s)	193, 376
BstV1I	GCAGC	9 cut(s)	79, 362, 369, 633, 844, 954, 1313, 1322, 1336
BstX2I	RGATCY	1 cut(s)	1285
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	1285
BsuRI	GGCC	8 cut(s)	545, 579, 635, 788, 884, 998, 1177, 1345
BtgI	CCRYGG	3 cut(s)	208, 580, 627
BtrI	CACGTC	1 cut(s)	1192
BtsCI	GGATG	2 cut(s)	6, 909
BtsIMutI	CAGTG	3 cut(s)	483, 546, 1379
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	90, 675
CaiI	CAGNNNCTG	1 cut(s)	1334
Cfr13I	GGNCC	2 cut(s)	883, 1050
Csp6I	GTAC	4 cut(s)	721, 795, 849, 1364
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviAII	CATG	9 cut(s)	130, 209, 265, 400, 581, 628, 784, 899, 1203
CviQI	GTAC	4 cut(s)	721, 795, 849, 1364
DdeI	CTNAG	2 cut(s)	302, 701
DpnI	GATC	5 cut(s)	168, 696, 960, 1254, 1287
DpnII	GATC	5 cut(s)	166, 694, 958, 1252, 1285
EaeI	YGGCCR	3 cut(s)	633, 786, 996
Eam1104I	CTCTTC	3 cut(s)	804, 1215, 1274
EarI	CTCTTC	3 cut(s)	804, 1215, 1274
Eco130I	CCWWGG	7 cut(s)	208, 580, 627, 879, 975, 1214, 1445
Eco24I	GRGCYC	1 cut(s)	1210
Eco32I	GATATC	1 cut(s)	1061
Eco47I	GGWCC	1 cut(s)	1050
Eco88I	CYCGRG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	883
EcoO65I	GGTNACC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	1061
EcoT14I	CCWWGG	7 cut(s)	208, 580, 627, 879, 975, 1214, 1445
EcoT22I	ATGCAT	1 cut(s)	785
EcoT38I	GRGCYC	1 cut(s)	1210
ErhI	CCWWGG	7 cut(s)	208, 580, 627, 879, 975, 1214, 1445
FaeI	CATG	9 cut(s)	133, 212, 268, 403, 584, 631, 787, 902, 1206
FalI	AAGNNNNNCTT	4 cut(s)	205, 237, 344, 376
FaqI	GGGAC	1 cut(s)	1063
FatI	CATG	9 cut(s)	129, 208, 264, 399, 580, 627, 783, 898, 1202
FauI	CCCGC	1 cut(s)	425
FbaI	TGATCA	1 cut(s)	166
FokI	GGATG	1 cut(s)	896
FriOI	GRGCYC	1 cut(s)	1210
FspBI	CTAG	7 cut(s)	15, 327, 498, 819, 956, 1064, 1419
GsuI	CTGGAG	3 cut(s)	397, 1053, 1203
HaeIII	GGCC	8 cut(s)	545, 579, 635, 788, 884, 998, 1177, 1345
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	9 cut(s)	133, 212, 268, 403, 584, 631, 787, 902, 1206
HincII	GTYRAC	2 cut(s)	139, 1146
HindII	GTYRAC	2 cut(s)	139, 1146
HindIII	AAGCTT	1 cut(s)	1091
HinfI	GANTC	2 cut(s)	510, 609
HpaI	GTTAAC	1 cut(s)	1146
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	139, 1146
Hpy188I	TCNGA	6 cut(s)	305, 985, 992, 1012, 1108, 1296
Hpy188III	TCNNGA	5 cut(s)	819, 956, 1070, 1182, 1419
Hpy8I	GTNNAC	2 cut(s)	139, 1146
HpyAV	CCTTC	9 cut(s)	12, 87, 231, 346, 421, 449, 453, 654, 1188
HpyCH4III	ACNGT	4 cut(s)	148, 875, 929, 1025
HpyCH4IV	ACGT	1 cut(s)	1191
HpyCH4V	TGCA	9 cut(s)	113, 378, 649, 712, 783, 942, 1243, 1310, 1324
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 670, 763, 1004, 1307, 1310
HpyF3I	CTNAG	2 cut(s)	302, 701
HpySE526I	ACGT	1 cut(s)	1191
Hsp92II	CATG	9 cut(s)	133, 212, 268, 403, 584, 631, 787, 902, 1206
KpnI	GGTACC	1 cut(s)	852
Ksp22I	TGATCA	1 cut(s)	166
KspAI	GTTAAC	1 cut(s)	1146
Kzo9I	GATC	5 cut(s)	166, 694, 958, 1252, 1285
LguI	GCTCTTC	1 cut(s)	1215
LmnI	GCTCC	5 cut(s)	670, 730, 771, 1072, 1418
Lsp1109I	GCAGC	9 cut(s)	79, 362, 369, 633, 844, 954, 1313, 1322, 1336
LweI	GCATC	2 cut(s)	633, 766
MaeI	CTAG	7 cut(s)	15, 327, 498, 819, 956, 1064, 1419
MaeII	ACGT	1 cut(s)	1191
MaeIII	GTNAC	2 cut(s)	49, 929
MalI	GATC	5 cut(s)	168, 696, 960, 1254, 1287
MboI	GATC	5 cut(s)	166, 694, 958, 1252, 1285
MboII	GAAGA	6 cut(s)	94, 791, 803, 944, 1202, 1291
MflI	RGATCY	1 cut(s)	1285
MhlI	GDGCHC	3 cut(s)	129, 1191, 1210
MlsI	TGGCCA	2 cut(s)	788, 998
MluCI	AATT	3 cut(s)	226, 1374, 1428
MluNI	TGGCCA	2 cut(s)	788, 998
MlyI	GAGTC	2 cut(s)	519, 618
MmeI	TCCRAC	2 cut(s)	819, 1035
Mox20I	TGGCCA	2 cut(s)	788, 998
Mph1103I	ATGCAT	1 cut(s)	785
MscI	TGGCCA	2 cut(s)	788, 998
MseI	TTAA	5 cut(s)	639, 1020, 1145, 1263, 1386
MslI	CAYNNNNRTG	2 cut(s)	207, 641
Msp20I	TGGCCA	2 cut(s)	788, 998
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	785
MwoI	GCNNNNNNNGC	6 cut(s)	124, 670, 763, 1004, 1307, 1310
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	3 cut(s)	208, 580, 627
NdeII	GATC	5 cut(s)	166, 694, 958, 1252, 1285
NlaIII	CATG	9 cut(s)	133, 212, 268, 403, 584, 631, 787, 902, 1206
NlaIV	GGNNCC	7 cut(s)	437, 625, 767, 850, 1051, 1405, 1414
NmuCI	GTSAC	1 cut(s)	929
NsiI	ATGCAT	1 cut(s)	785
NspV	TTCGAA	1 cut(s)	777
PaeR7I	CTCGAG	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	1215
PctI	GAATGC	1 cut(s)	785
PleI	GAGTC	2 cut(s)	518, 617
PpsI	GAGTC	2 cut(s)	518, 617
PspEI	GGTNACC	1 cut(s)	49
PspN4I	GGNNCC	7 cut(s)	437, 625, 767, 850, 1051, 1405, 1414
PspPI	GGNCC	2 cut(s)	883, 1050
PspXI	VCTCGAGB	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	380
PstNI	CAGNNNCTG	1 cut(s)	1334
PsuI	RGATCY	1 cut(s)	1285
RsaI	GTAC	4 cut(s)	722, 796, 850, 1365
RsaNI	GTAC	4 cut(s)	721, 795, 849, 1364
RseI	CAYNNNNRTG	2 cut(s)	207, 641
SapI	GCTCTTC	1 cut(s)	1215
SaqAI	TTAA	5 cut(s)	639, 1020, 1145, 1263, 1386
Sau3AI	GATC	5 cut(s)	166, 694, 958, 1252, 1285
Sau96I	GGNCC	2 cut(s)	883, 1050
SchI	GAGTC	2 cut(s)	519, 618
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	129, 1191, 1210
SfaNI	GCATC	2 cut(s)	633, 766
SfcI	CTRYAG	2 cut(s)	193, 376
Sfr274I	CTCGAG	1 cut(s)	536
SfuI	TTCGAA	1 cut(s)	777
SinI	GGWCC	1 cut(s)	1050
SlaI	CTCGAG	1 cut(s)	536
SmiMI	CAYNNNNRTG	2 cut(s)	207, 641
SmlI	CTYRAG	4 cut(s)	311, 536, 686, 887
SmoI	CTYRAG	4 cut(s)	311, 536, 686, 887
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	3 cut(s)	226, 1374, 1428
SsiI	CCGC	4 cut(s)	152, 432, 632, 1174
SspI	AATATT	1 cut(s)	949
SspMI	CTAG	7 cut(s)	15, 327, 498, 819, 956, 1064, 1419
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	7 cut(s)	208, 580, 627, 879, 975, 1214, 1445
TaaI	ACNGT	4 cut(s)	148, 875, 929, 1025
TaiI	ACGT	1 cut(s)	1194
TaqI	TCGA	5 cut(s)	537, 777, 870, 1034, 1277
TasI	AATT	3 cut(s)	226, 1374, 1428
TauI	GCSGC	2 cut(s)	635, 1177
Tru1I	TTAA	5 cut(s)	639, 1020, 1145, 1263, 1386
Tru9I	TTAA	5 cut(s)	639, 1020, 1145, 1263, 1386
TscAI	CASTG	3 cut(s)	483, 553, 1386
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	9 cut(s)	92, 357, 375, 646, 832, 942, 1301, 1310, 1324
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	4 cut(s)	174, 373, 416, 803
TspGWI	ACGGA	3 cut(s)	605, 708, 959
TspRI	CASTG	3 cut(s)	483, 553, 1386
VpaK11BI	GGWCC	1 cut(s)	1050
XapI	RAATTY	1 cut(s)	1428
XbaI	TCTAGA	3 cut(s)	818, 955, 1418
XcmI	CCANNNNNNNNNTGG	2 cut(s)	206, 587
XhoI	CTCGAG	1 cut(s)	536
XspI	CTAG	7 cut(s)	15, 327, 498, 819, 956, 1064, 1419
Zsp2I	ATGCAT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.