Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010204

Physical Location & Seq

Genomic Coordinates Reverse (-)

4365637 .. 4368968

Gene Structure 3332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGAAGTTGACACTACTGTTGCGGAAAACCATACTGATCATAAACACCACCTTTCACATTCCTATAGCCACCACCACCATGGAAGTTTTCCTTCCAATTTGGCTATCATTATCATCATTTCCATCGTCTTTGTCATGGTCGTTCTTGCTATAACCCTCATCATATTATTTCTCAGACGGCTCAAGTCAGCCAAAACTAGTGGTGGCGACATTGATGATGAGAAGGGCAGCTTGAACAATACAAGCTGCAGGTTCATTGCTCAAAACTCCATGAACTTCAACTCCAGCCCAGATGTGAAGGGCGGGTGCCTTCAAGGAGGGAACTTGGGAAGGTCAGTGAGGACATCAGTGGCAATCACAACACCAACTAGATACAGAGGAGTCCAAGTGTTGTCATACAAGGAACTCGAGGAGGCCACTGATAAGTTTAGCGAGGCGAATGTGATAGGCCATGGAGGGTTTGGAGTGGTGTATAGGGGAGTCCTCCGTGATGGAACCATGGCGGCCATTAAGATGCTGCACAGGGAGGGAAGGCAAGGGGAGCGTGCTTTCAGGCTTGAGGTTGATCTACTAAGCCGATTGCAGTCTCCGTACTTGGTGGAGCTACTTGGTTATTGTGCTGACCAGCATCATAGGCTCCTTGTATTCGAATGCATGGCCAATGGTACTCTTCAACACCATCTTCATTCTAGAAACCATCAGCAGCCGTTGGATTGGGGTACCCGATTGAGGATAGCCCTCGACTGTGCCAAGGCCCTTGAGTTCCTCCATGAGCAAAACATCCCATCTGTTATACACCGTGACTTCAAGTGCAGCAATATTCTTCTAGATCAAAACTTCCGTGCCAAGGTGTCTGATTTCGGATTGGCCAAGATGGCTTCCGACAAGATTAACGGTCAGGTTTCGACACGAGTGCTTGGGACCACAGGATATCTAGCTCCAGAGTATGCCTCAACTGGAAAGCTTACTACAAAATCAGATGTTTATAGCTACGGCGTGGTTCTTTTAGAGCTGTTAACAGGGCGAGTGCCAGTAGATACCAAGCGGCCTTCTGGAGAGCACGTCCTTGTCTCATGGGCTCTTCCAAGGCTAACTAACAGAGAAAAAGTAGTGCAAATGGTTGATCCAGCTCTTAAAGGGCAATACTCGAAGAGGGATCTCATTCAGATAGCAGCTATTGCAGCAATGTGTGTGCAGCCAGAAGCTGAATATCGGCCTCTAATGACTGATGTCGTACCCTCTCTAATTCCACTGGTTAAAAACTCTTATGTTGGTTCCTCTGGCTCCTCTAGATTTCAAATTCAAGTAGTAAGTCCAAGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

441

Amino Acids

48.97

Weight (kDa)

9.04

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	144 - 350	6.3e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	147 - 414	2.9e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54820 AT1G54820 AT1G54820 AT1G54820
fragaria_vesca	FvH4_6g05470
malus_domestica	MD04G1208400.v1.1 MD12G1222300.v1.1
prunus_persica	Prupe.5G030100_v2.0.a1 Prupe.6G329300_v2.0.a1
pyrus_communis	pycom04g18450
rosa_chinensis	RchiOBHm_Chr3g0454241
rosa_laevigata	RLG00000025473
rosa_multiflora	Rmu_sc0026184.1_g000003 Rmu_sc0038077.1_g000002
rosa_roxburghii	Rroxscaffold_165G00437020 Rroxscaffold_6G00425340
rosa_rugosa	Rorug02G0653600
rosa_samantha	Rh3AG057000 Rh3BG058400 Rh3CG057600 Rh3DG058900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
Acc65I	GGTACC	1 cut(s)	719
AccB1I	GGYRCC	2 cut(s)	306, 719
AciI	CCGC	4 cut(s)	23, 303, 503, 1045
AclWI	GGATC	2 cut(s)	1118, 1164
AcoI	YGGCCR	3 cut(s)	504, 657, 867
AcsI	RAATTY	1 cut(s)	1299
AfaI	GTAC	4 cut(s)	593, 667, 721, 1236
AfiI	CCNNNNNNNGG	2 cut(s)	729, 847
AgsI	TTSAA	7 cut(s)	235, 280, 314, 674, 808, 1298, 1304
AhlI	ACTAGT	1 cut(s)	197
AjiI	CACGTC	1 cut(s)	1063
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
Alw21I	GWGCWC	1 cut(s)	1062
Alw26I	GTCTC	2 cut(s)	591, 1075
AlwI	GGATC	2 cut(s)	1118, 1164
AlwNI	CAGNNNCTG	1 cut(s)	1205
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	8 cut(s)	414, 448, 504, 657, 753, 867, 1046, 1214
ApeKI	GCWGC	8 cut(s)	228, 246, 517, 703, 813, 1172, 1181, 1195
ApoI	RAATTY	1 cut(s)	1299
Asp718I	GGTACC	1 cut(s)	719
AspS9I	GGNCC	2 cut(s)	754, 921
AsuII	TTCGAA	1 cut(s)	648
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	921
BalI	TGGCCA	2 cut(s)	659, 869
BanI	GGYRCC	2 cut(s)	306, 719
BanII	GRGCYC	1 cut(s)	1081
BauI	CACGAG	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	1062
BbvI	GCAGC	8 cut(s)	233, 240, 504, 715, 825, 1184, 1193, 1207
BccI	CCATC	6 cut(s)	131, 485, 687, 705, 793, 868
BceAI	ACGGC	3 cut(s)	194, 691, 1009
BcgI	CGANNNNNNTGC	2 cut(s)	895, 929
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	591, 1075
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	6 cut(s)	198, 369, 690, 827, 935, 1290
BfmI	CTRYAG	2 cut(s)	64, 247
BfuAI	ACCTGC	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	875
Bme18I	GGWCC	1 cut(s)	921
BmeT110I	CYCGRG	1 cut(s)	407
BmgBI	CACGTC	1 cut(s)	1063
BmgT120I	GGNCC	2 cut(s)	754, 921
BmiI	GGNNCC	7 cut(s)	308, 496, 638, 721, 922, 1276, 1285
BmsI	GCATC	2 cut(s)	504, 637
BoxI	GACNNNNGTC	1 cut(s)	1229
BplI	GAGNNNNNCTC	2 cut(s)	935, 967
BpmI	CTGGAG	3 cut(s)	268, 924, 1074
Bpu14I	TTCGAA	1 cut(s)	648
BpuEI	CTTGAG	3 cut(s)	167, 578, 779
BsaJI	CCNNGG	7 cut(s)	79, 451, 498, 750, 846, 1085, 1316
BsaXI	ACNNNNNCTCC	6 cut(s)	266, 296, 372, 402, 1047, 1077
Bsc4I	CCNNNNNNNGG	2 cut(s)	729, 847
Bse1I	ACTGG	3 cut(s)	961, 1031, 1257
Bse3DI	GCAATG	2 cut(s)	255, 1191
BseDI	CCNNGG	7 cut(s)	79, 451, 498, 750, 846, 1085, 1316
BseGI	GGATG	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	729, 847
BseMI	GCAATG	2 cut(s)	255, 1191
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	3 cut(s)	961, 1031, 1257
BseRI	GAGGAG	3 cut(s)	393, 425, 1276
BseXI	GCAGC	8 cut(s)	233, 240, 504, 715, 825, 1184, 1193, 1207
BsgI	GTGCAG	3 cut(s)	503, 832, 1214
BshFI	GGCC	8 cut(s)	416, 450, 506, 659, 755, 869, 1048, 1216
BshNI	GGYRCC	2 cut(s)	306, 719
BsiHKAI	GWGCWC	1 cut(s)	1062
BsiHKCI	CYCGRG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	934
BslI	CCNNNNNNNGG	2 cut(s)	729, 847
BsmAI	GTCTC	2 cut(s)	591, 1075
BsmFI	GGGAC	1 cut(s)	934
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	8 cut(s)	416, 450, 506, 659, 755, 869, 1048, 1216
BsoBI	CYCGRG	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	648
Bsp1286I	GDGCHC	2 cut(s)	1062, 1081
Bsp143I	GATC	5 cut(s)	37, 565, 829, 1123, 1156
Bsp19I	CCATGG	3 cut(s)	79, 451, 498
BspACI	CCGC	4 cut(s)	23, 303, 503, 1045
BspANI	GGCC	8 cut(s)	416, 450, 506, 659, 755, 869, 1048, 1216
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	7 cut(s)	308, 496, 638, 721, 922, 1276, 1285
BspMAI	CTGCAG	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	1118, 1164
BspQI	GCTCTTC	1 cut(s)	1086
BspT104I	TTCGAA	1 cut(s)	648
BspT107I	GGYRCC	2 cut(s)	306, 719
BsrDI	GCAATG	2 cut(s)	255, 1191
BsrI	ACTGG	3 cut(s)	961, 1031, 1257
BssECI	CCNNGG	7 cut(s)	79, 451, 498, 750, 846, 1085, 1316
BssMI	GATC	5 cut(s)	37, 565, 829, 1123, 1156
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	7 cut(s)	79, 451, 498, 750, 846, 1085, 1316
Bst2BI	CACGAG	1 cut(s)	909
Bst4CI	ACNGT	4 cut(s)	19, 746, 800, 896
Bst6I	CTCTTC	3 cut(s)	675, 1086, 1145
BstAPI	GCANNNNNTGC	1 cut(s)	1178
BstBI	TTCGAA	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	173, 572
BstDSI	CCRYGG	3 cut(s)	79, 451, 498
BstF5I	GGATG	1 cut(s)	780
BstKTI	GATC	5 cut(s)	40, 568, 832, 1126, 1159
BstMAI	GTCTC	2 cut(s)	591, 1075
BstMBI	GATC	5 cut(s)	37, 565, 829, 1123, 1156
BstMWI	GCNNNNNNNGC	5 cut(s)	541, 634, 875, 1178, 1181
BstPAI	GACNNNNGTC	1 cut(s)	1229
BstSFI	CTRYAG	2 cut(s)	64, 247
BstV1I	GCAGC	8 cut(s)	233, 240, 504, 715, 825, 1184, 1193, 1207
BstX2I	RGATCY	1 cut(s)	1156
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	1156
BsuRI	GGCC	8 cut(s)	416, 450, 506, 659, 755, 869, 1048, 1216
BtgI	CCRYGG	3 cut(s)	79, 451, 498
BtrI	CACGTC	1 cut(s)	1063
BtsCI	GGATG	1 cut(s)	780
BtsIMutI	CAGTG	4 cut(s)	342, 354, 417, 1250
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	546
CaiI	CAGNNNCTG	1 cut(s)	1205
Cfr13I	GGNCC	2 cut(s)	754, 921
Csp6I	GTAC	4 cut(s)	592, 666, 720, 1235
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	8 cut(s)	80, 136, 271, 452, 499, 655, 770, 1074
CviQI	GTAC	4 cut(s)	592, 666, 720, 1235
DdeI	CTNAG	2 cut(s)	173, 572
DpnI	GATC	5 cut(s)	39, 567, 831, 1125, 1158
DpnII	GATC	5 cut(s)	37, 565, 829, 1123, 1156
EaeI	YGGCCR	3 cut(s)	504, 657, 867
Eam1104I	CTCTTC	3 cut(s)	675, 1086, 1145
EarI	CTCTTC	3 cut(s)	675, 1086, 1145
Eco130I	CCWWGG	7 cut(s)	79, 451, 498, 750, 846, 1085, 1316
Eco24I	GRGCYC	1 cut(s)	1081
Eco32I	GATATC	1 cut(s)	932
Eco47I	GGWCC	1 cut(s)	921
Eco88I	CYCGRG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	932
EcoT14I	CCWWGG	7 cut(s)	79, 451, 498, 750, 846, 1085, 1316
EcoT22I	ATGCAT	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	1081
ErhI	CCWWGG	7 cut(s)	79, 451, 498, 750, 846, 1085, 1316
FaeI	CATG	8 cut(s)	83, 139, 274, 455, 502, 658, 773, 1077
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 215, 247
FaqI	GGGAC	1 cut(s)	934
FatI	CATG	8 cut(s)	79, 135, 270, 451, 498, 654, 769, 1073
FauI	CCCGC	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	37
FokI	GGATG	1 cut(s)	767
FriOI	GRGCYC	1 cut(s)	1081
FspBI	CTAG	6 cut(s)	198, 369, 690, 827, 935, 1290
GsuI	CTGGAG	3 cut(s)	268, 924, 1074
HaeIII	GGCC	8 cut(s)	416, 450, 506, 659, 755, 869, 1048, 1216
Hin1II	CATG	8 cut(s)	83, 139, 274, 455, 502, 658, 773, 1077
HincII	GTYRAC	2 cut(s)	10, 1017
HindII	GTYRAC	2 cut(s)	10, 1017
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	2 cut(s)	381, 480
HpaI	GTTAAC	1 cut(s)	1017
Hpy166II	GTNNAC	2 cut(s)	10, 1017
Hpy188I	TCNGA	6 cut(s)	176, 856, 863, 883, 979, 1167
Hpy188III	TCNNGA	5 cut(s)	690, 827, 941, 1053, 1290
Hpy8I	GTNNAC	2 cut(s)	10, 1017
HpyAV	CCTTC	7 cut(s)	102, 217, 292, 320, 324, 525, 1059
HpyCH4III	ACNGT	4 cut(s)	19, 746, 800, 896
HpyCH4IV	ACGT	1 cut(s)	1062
HpyCH4V	TGCA	8 cut(s)	249, 520, 583, 654, 813, 1114, 1181, 1195
HpyF10VI	GCNNNNNNNGC	5 cut(s)	541, 634, 875, 1178, 1181
HpyF3I	CTNAG	2 cut(s)	173, 572
HpySE526I	ACGT	1 cut(s)	1062
Hsp92II	CATG	8 cut(s)	83, 139, 274, 455, 502, 658, 773, 1077
KpnI	GGTACC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	37
KspAI	GTTAAC	1 cut(s)	1017
Kzo9I	GATC	5 cut(s)	37, 565, 829, 1123, 1156
LguI	GCTCTTC	1 cut(s)	1086
LmnI	GCTCC	5 cut(s)	541, 601, 642, 943, 1289
Lsp1109I	GCAGC	8 cut(s)	233, 240, 504, 715, 825, 1184, 1193, 1207
LweI	GCATC	2 cut(s)	504, 637
MaeI	CTAG	6 cut(s)	198, 369, 690, 827, 935, 1290
MaeII	ACGT	1 cut(s)	1062
MaeIII	GTNAC	1 cut(s)	800
MalI	GATC	5 cut(s)	39, 567, 831, 1125, 1158
MboI	GATC	5 cut(s)	37, 565, 829, 1123, 1156
MboII	GAAGA	5 cut(s)	662, 674, 815, 1073, 1162
MflI	RGATCY	1 cut(s)	1156
MhlI	GDGCHC	2 cut(s)	1062, 1081
MlsI	TGGCCA	2 cut(s)	659, 869
MluCI	AATT	3 cut(s)	97, 1245, 1299
MluNI	TGGCCA	2 cut(s)	659, 869
MlyI	GAGTC	2 cut(s)	390, 489
MmeI	TCCRAC	2 cut(s)	690, 906
Mox20I	TGGCCA	2 cut(s)	659, 869
Mph1103I	ATGCAT	1 cut(s)	656
MscI	TGGCCA	2 cut(s)	659, 869
MseI	TTAA	5 cut(s)	510, 891, 1016, 1134, 1257
MslI	CAYNNNNRTG	2 cut(s)	78, 512
Msp20I	TGGCCA	2 cut(s)	659, 869
Mva1269I	GAATGC	1 cut(s)	656
MwoI	GCNNNNNNNGC	5 cut(s)	541, 634, 875, 1178, 1181
NcoI	CCATGG	3 cut(s)	79, 451, 498
NdeII	GATC	5 cut(s)	37, 565, 829, 1123, 1156
NlaIII	CATG	8 cut(s)	83, 139, 274, 455, 502, 658, 773, 1077
NlaIV	GGNNCC	7 cut(s)	308, 496, 638, 721, 922, 1276, 1285
NmuCI	GTSAC	1 cut(s)	800
NsiI	ATGCAT	1 cut(s)	656
NspV	TTCGAA	1 cut(s)	648
PaeR7I	CTCGAG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	1086
PctI	GAATGC	1 cut(s)	656
PleI	GAGTC	2 cut(s)	389, 488
PpsI	GAGTC	2 cut(s)	389, 488
PshAI	GACNNNNGTC	1 cut(s)	1229
PspN4I	GGNNCC	7 cut(s)	308, 496, 638, 721, 922, 1276, 1285
PspPI	GGNCC	2 cut(s)	754, 921
PspXI	VCTCGAGB	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	1205
PsuI	RGATCY	1 cut(s)	1156
RsaI	GTAC	4 cut(s)	593, 667, 721, 1236
RsaNI	GTAC	4 cut(s)	592, 666, 720, 1235
RseI	CAYNNNNRTG	2 cut(s)	78, 512
SapI	GCTCTTC	1 cut(s)	1086
SaqAI	TTAA	5 cut(s)	510, 891, 1016, 1134, 1257
Sau3AI	GATC	5 cut(s)	37, 565, 829, 1123, 1156
Sau96I	GGNCC	2 cut(s)	754, 921
SchI	GAGTC	2 cut(s)	390, 489
SduI	GDGCHC	2 cut(s)	1062, 1081
SfaNI	GCATC	2 cut(s)	504, 637
SfcI	CTRYAG	2 cut(s)	64, 247
Sfr274I	CTCGAG	1 cut(s)	407
SfuI	TTCGAA	1 cut(s)	648
SinI	GGWCC	1 cut(s)	921
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	78, 512
SmlI	CTYRAG	4 cut(s)	182, 407, 557, 758
SmoI	CTYRAG	4 cut(s)	182, 407, 557, 758
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	3 cut(s)	97, 1245, 1299
SsiI	CCGC	4 cut(s)	23, 303, 503, 1045
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	6 cut(s)	198, 369, 690, 827, 935, 1290
StyI	CCWWGG	7 cut(s)	79, 451, 498, 750, 846, 1085, 1316
TaaI	ACNGT	4 cut(s)	19, 746, 800, 896
TaiI	ACGT	1 cut(s)	1065
TaqI	TCGA	5 cut(s)	408, 648, 741, 905, 1148
TasI	AATT	3 cut(s)	97, 1245, 1299
TauI	GCSGC	2 cut(s)	506, 1048
Tru1I	TTAA	5 cut(s)	510, 891, 1016, 1134, 1257
Tru9I	TTAA	5 cut(s)	510, 891, 1016, 1134, 1257
TscAI	CASTG	4 cut(s)	342, 354, 424, 1257
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	8 cut(s)	228, 246, 517, 703, 813, 1172, 1181, 1195
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	3 cut(s)	244, 287, 674
TspGWI	ACGGA	3 cut(s)	476, 579, 830
TspRI	CASTG	4 cut(s)	342, 354, 424, 1257
VpaK11BI	GGWCC	1 cut(s)	921
XapI	RAATTY	1 cut(s)	1299
XbaI	TCTAGA	3 cut(s)	689, 826, 1289
XcmI	CCANNNNNNNNNTGG	2 cut(s)	77, 458
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	6 cut(s)	198, 369, 690, 827, 935, 1290
Zsp2I	ATGCAT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.