Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Forward (+)

76082069 .. 76085008

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0653600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCATCTGTTCTAGCACGAACAGGGCGACATCGCCAACGTTATGAGAACAATTTTCGCCTTGTTTCTGGATGTATCCCTTACCGGATAACAGAAGACATCAATGATGAGGATCATAGCAACAATACCCATATTGAAAACAAGATACAAGTTCTCATGGTTTCTTCACCTGACCGCGACGACCGAGTGTTCCCAAAAGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGTCGGGAAGCCTTCGAGGAAGCAGGGGTGAAAGGAACACTAAGACAGGAAACTCCTCTGGGAGTTTGGGAGTTCAGAAGCAAAAGTAGGCAGAACATGTGCAGCCTGGAAGGAGGCTGCAGAGGCTACATGTTTGCATTAGAGGTAACTGAAGAGCTTGACACCTGGCCAGAGCAGCAAAACCGTGATAGAGAATGGCTAAACATAAAGGAGGCATTTAGAGTGTGCCGGTATGAATGGATGCGTAGGGCACTGGAGCAGTTTCTGAGAGTTATGGCGTCAGATAAGGATGATGATGATGATGGTACTGTGGGAAAAGCAGCTGTAGTACTACCAGCTGATGAAGTAGTAGTGGATGATCAGATCATGAATCAGATGACAGAATTATCAGGAGAGTACGATGATCATGAGAATACATTAGAGGACTTAATTGAGCCCGAACCTTGTGGTCCTCGTCCGGCCATGATCTCCATGCCAATGCCCTTGCCGTCGCCGGTGTTATCGTTGCCATTGTCATCCAGCAACGTCAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

257

Amino Acids

29.43

Weight (kDa)

4.57

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	50 - 165	2.5e-11	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	175
AclI	AACGTT	1 cut(s)	40
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	2 cut(s)	404, 696
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	515
AfaI	GTAC	3 cut(s)	544, 567, 635
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflIII	ACRYGT	2 cut(s)	333, 366
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	342, 401
AluBI	AGCT	4 cut(s)	233, 394, 560, 575
AluI	AGCT	4 cut(s)	233, 394, 560, 575
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	404, 696
ApeKI	GCWGC	5 cut(s)	233, 339, 354, 412, 557
AspS9I	GGNCC	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	159, 277
AvaII	GGWCC	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	5 cut(s)	220, 341, 351, 424, 569
BccI	CCATC	2 cut(s)	198, 533
BceAI	ACGGC	1 cut(s)	709
BciT130I	CCWGG	2 cut(s)	344, 403
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	2 cut(s)	595, 640
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	355, 561
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	5 cut(s)	234, 340, 355, 413, 558
BlsI	GCNGC	5 cut(s)	235, 341, 356, 414, 559
BmcAI	AGTACT	1 cut(s)	567
Bme1390I	CCNGG	2 cut(s)	344, 403
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmrFI	CCNGG	2 cut(s)	344, 403
BmsI	GCATC	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	2 cut(s)	465, 730
Bse1I	ACTGG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	344, 403
BseGI	GGATG	7 cut(s)	77, 209, 217, 483, 532, 598, 752
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	5 cut(s)	220, 341, 351, 424, 569
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	406, 698
BsiEI	CGRYCG	1 cut(s)	184
BsiSI	CCGG	4 cut(s)	85, 466, 695, 731
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	406, 698
Bsp1286I	GDGCHC	2 cut(s)	490, 675
Bsp143I	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	406, 698
BspCNI	CTCAG	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	3 cut(s)	603, 643, 770
BspMAI	CTGCAG	1 cut(s)	359
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	384
BsrFI	RCCGGY	2 cut(s)	465, 730
BsrI	ACTGG	1 cut(s)	495
BssAI	RCCGGY	2 cut(s)	465, 730
BssMI	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
BssNI	GRCGYC	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	344, 403
Bst4CI	ACNGT	3 cut(s)	223, 422, 547
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	278, 503
BstF5I	GGATG	7 cut(s)	77, 209, 217, 483, 532, 598, 752
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	6 cut(s)	115, 598, 603, 643, 705, 770
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 412
BstNI	CCWGG	2 cut(s)	344, 403
BstNSI	RCATGY	2 cut(s)	337, 370
BstSCI	CCNGG	2 cut(s)	342, 401
BstSFI	CTRYAG	2 cut(s)	355, 561
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	5 cut(s)	220, 341, 351, 424, 569
BstV2I	GAAGAC	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	406, 698
BtgZI	GCGATG	1 cut(s)	17
BtsCI	GGATG	7 cut(s)	77, 209, 217, 483, 532, 598, 752
BtsIMutI	CAGTG	1 cut(s)	488
CaiI	CAGNNNCTG	1 cut(s)	502
CciI	TCATGA	3 cut(s)	603, 643, 770
Cfr10I	RCCGGY	2 cut(s)	465, 730
Cfr13I	GGNCC	1 cut(s)	686
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	3 cut(s)	543, 566, 634
CviAII	CATG	8 cut(s)	157, 334, 367, 604, 644, 700, 709, 771
CviQI	GTAC	3 cut(s)	543, 566, 634
DdeI	CTNAG	2 cut(s)	278, 503
DpnI	GATC	6 cut(s)	114, 597, 602, 642, 704, 769
DpnII	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
EaeI	YGGCCR	2 cut(s)	404, 696
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	675
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	342, 401
EcoT38I	GRGCYC	1 cut(s)	675
FaeI	CATG	8 cut(s)	160, 337, 370, 607, 647, 703, 712, 774
FatI	CATG	8 cut(s)	156, 333, 366, 603, 643, 699, 708, 770
FbaI	TGATCA	2 cut(s)	595, 640
Fnu4HI	GCNGC	5 cut(s)	234, 340, 355, 413, 558
FokI	GGATG	7 cut(s)	84, 216, 224, 490, 539, 605, 739
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	5 cut(s)	234, 340, 355, 413, 558
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	5 cut(s)	234, 340, 355, 413, 558
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	2 cut(s)	406, 698
HapII	CCGG	4 cut(s)	85, 466, 695, 731
HgaI	GACGC	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	8 cut(s)	160, 337, 370, 607, 647, 703, 712, 774
HinfI	GANTC	1 cut(s)	607
HpaII	CCGG	4 cut(s)	85, 466, 695, 731
HphI	GGTGA	2 cut(s)	159, 277
Hpy188I	TCNGA	6 cut(s)	314, 504, 520, 600, 612, 767
Hpy188III	TCNNGA	6 cut(s)	69, 242, 604, 627, 644, 771
Hpy99I	CGWCG	2 cut(s)	182, 730
HpyAV	CCTTC	2 cut(s)	259, 341
HpyCH4III	ACNGT	3 cut(s)	223, 422, 547
HpyCH4IV	ACGT	2 cut(s)	40, 762
HpyCH4V	TGCA	3 cut(s)	339, 357, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 412
HpyF3I	CTNAG	2 cut(s)	278, 503
HpySE526I	ACGT	2 cut(s)	40, 762
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	8 cut(s)	160, 337, 370, 607, 647, 703, 712, 774
Ksp22I	TGATCA	2 cut(s)	595, 640
Kzo9I	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	5 cut(s)	220, 341, 351, 424, 569
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	40, 762
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	6 cut(s)	114, 597, 602, 642, 704, 769
MboI	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
MboII	GAAGA	3 cut(s)	107, 156, 401
MhlI	GDGCHC	2 cut(s)	490, 675
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	3 cut(s)	52, 620, 666
MluNI	TGGCCA	1 cut(s)	406
Mox20I	TGGCCA	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	406
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	406
MspA1I	CMGCKG	2 cut(s)	560, 575
MspI	CCGG	4 cut(s)	85, 466, 695, 731
MspR9I	CCNGG	2 cut(s)	344, 403
MvaI	CCWGG	2 cut(s)	344, 403
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	360, 412
NdeII	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
NlaIII	CATG	8 cut(s)	160, 337, 370, 607, 647, 703, 712, 774
NspI	RCATGY	2 cut(s)	337, 370
PagI	TCATGA	3 cut(s)	603, 643, 770
PciI	ACATGT	2 cut(s)	333, 366
PciSI	GCTCTTC	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	607
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	5 cut(s)	235, 341, 356, 414, 559
PscI	ACATGT	2 cut(s)	333, 366
Psp1406I	AACGTT	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	342, 401
PspGI	CCWGG	2 cut(s)	342, 401
PspPI	GGNCC	1 cut(s)	686
PstI	CTGCAG	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	502
PvuII	CAGCTG	2 cut(s)	560, 575
RsaI	GTAC	3 cut(s)	544, 567, 635
RsaNI	GTAC	3 cut(s)	543, 566, 634
RseI	CAYNNNNRTG	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	5 cut(s)	234, 340, 355, 413, 558
Sau3AI	GATC	6 cut(s)	112, 595, 600, 640, 702, 767
Sau96I	GGNCC	1 cut(s)	686
ScaI	AGTACT	1 cut(s)	567
ScrFI	CCNGG	2 cut(s)	344, 403
SduI	GDGCHC	2 cut(s)	490, 675
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	2 cut(s)	355, 561
SgrAI	CRCCGGYG	1 cut(s)	730
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	1 cut(s)	713
Sse9I	AATT	3 cut(s)	52, 620, 666
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	342, 401
TaaI	ACNGT	3 cut(s)	223, 422, 547
TaiI	ACGT	2 cut(s)	43, 765
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	52, 620, 666
TatI	WGTACW	1 cut(s)	565
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	1 cut(s)	495
TseI	GCWGC	5 cut(s)	233, 339, 354, 412, 557
TspDTI	ATGAA	3 cut(s)	486, 594, 620
TspRI	CASTG	1 cut(s)	495
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	686
XceI	RCATGY	2 cut(s)	337, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XspI	CTAG	1 cut(s)	14
ZrmI	AGTACT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.