Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Forward (+)

29328739 .. 29333910

Gene Structure 5172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1208300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGGGATTCTGAGGTTAATGTGAAGGCTCAGAAGACAGTTTTTGTAACTGTTGGAACTACTAGTTTTGATGCTCTTGTTAGAGCGGTGGATACACATGAGTTTAAAGAAGAGTTGTCGAAAAGAGGGTATACTCGGCTTCTAATCCAAATGGGGCGCGGATCCTATATTCCAACAAAGGCTGAAGGAGGAGATGAGCCCCTTGCTGTTGATTACTTCACTTTTTCTTCAAGCATTGCAGACCACCTGAGAGCCGCATCTCTTGTGATCAGTCATGCAGGGTCAGGTAGCATATTTGAGACATTGAGGCTTGGTAAGCCCTTAATTGTTGTCGTGAATGAAGATCTGATGGATAACCATCAAAGTGAGTTGGCAGAAGAACTAGCAGACAGGAAGCATTTGTACTATGGTCGCCCGCAGACACTTCATCACGTTGTAGCAGATATGAATTTGGATTCTCTCGTTCCTTACCATCCAGGTGATGCGACACCAGTTGCCAAGCTTATCAACAGGTTCCTTGGTTTTGCAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

179

Amino Acids

19.62

Weight (kDa)

5.44

Isoelectric Point (pI)

24.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tran_28_C	PF04101	13 - 169	8.5e-35	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	1 cut(s)	159
AciI	CCGC	4 cut(s)	86, 159, 255, 416
AclWI	GGATC	2 cut(s)	156, 169
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	231
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	2 cut(s)	156, 169
ApoI	RAATTY	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BbsI	GAAGAC	1 cut(s)	41
BccI	CCATC	3 cut(s)	343, 366, 480
BciT130I	CCWGG	1 cut(s)	477
BciVI	GTATCC	1 cut(s)	85
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	293
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	2 cut(s)	63, 383
BfuI	GTATCC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	163, 515
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	3 cut(s)	61, 266, 472
BpiI	GAAGAC	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	44, 239
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	161, 267, 343
BspACI	CCGC	4 cut(s)	86, 159, 255, 416
BspCNI	CTCAG	3 cut(s)	4, 43, 240
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	163, 515
BspPI	GGATC	2 cut(s)	156, 169
BsrBI	CCGCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	3 cut(s)	161, 267, 343
BssNAI	GTATAC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	517
Bst1107I	GTATAC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	40, 52
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	12, 30, 248
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	3 cut(s)	164, 270, 346
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	3 cut(s)	161, 267, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstUI	CGCG	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	2 cut(s)	161, 343
BstYI	RGATCY	2 cut(s)	161, 343
BstZ17I	GTATAC	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	416
CfoI	GCGC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	98, 275
CviJI	RGCY	8 cut(s)	29, 139, 182, 199, 254, 310, 319, 502
CviKI_1	RGCY	8 cut(s)	29, 139, 182, 199, 254, 310, 319, 502
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	3 cut(s)	12, 30, 248
DpnI	GATC	3 cut(s)	163, 269, 345
DpnII	GATC	3 cut(s)	161, 267, 343
DraI	TTTAAA	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	2 cut(s)	101, 278
FaiI	YATR	7 cut(s)	99, 132, 168, 276, 293, 408, 446
FatI	CATG	2 cut(s)	97, 274
FauI	CCCGC	1 cut(s)	423
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	2 cut(s)	63, 383
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	101, 278
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	2 cut(s)	8, 455
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	3 cut(s)	13, 33, 348
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	19, 179
HpyCH4III	ACNGT	2 cut(s)	40, 52
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	239, 278, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	3 cut(s)	12, 30, 248
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	101, 278
HspAI	GCGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	161, 267, 343
LpnPI	CCDG	8 cut(s)	260, 264, 270, 376, 462, 489, 496, 504
LweI	GCATC	3 cut(s)	61, 266, 472
MaeI	CTAG	2 cut(s)	63, 383
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	163, 269, 345
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	3 cut(s)	161, 267, 343
MboII	GAAGA	5 cut(s)	46, 122, 219, 353, 389
MflI	RGATCY	2 cut(s)	161, 343
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	324, 448
MmeI	TCCRAC	2 cut(s)	34, 197
MnlI	CCTC	4 cut(s)	7, 119, 182, 300
MseI	TTAA	3 cut(s)	18, 105, 323
MslI	CAYNNNNRTG	2 cut(s)	363, 477
MspR9I	CCNGG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	161, 267, 343
NlaIII	CATG	2 cut(s)	101, 278
NlaIV	GGNNCC	2 cut(s)	163, 515
NmeAIII	GCCGAG	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	8, 455
PkrI	GCNGC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	163, 515
PsuI	RGATCY	2 cut(s)	161, 343
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	2 cut(s)	363, 477
SaqAI	TTAA	3 cut(s)	18, 105, 323
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	3 cut(s)	161, 267, 343
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	7 cut(s)	18, 249, 289, 435, 481, 504, 515
SfaNI	GCATC	3 cut(s)	61, 266, 472
SmiMI	CAYNNNNRTG	2 cut(s)	363, 477
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	2 cut(s)	324, 448
SsiI	CCGC	4 cut(s)	86, 159, 255, 416
SspMI	CTAG	2 cut(s)	63, 383
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	40, 52
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	119
TasI	AATT	2 cut(s)	324, 448
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	8, 455
Tru1I	TTAA	3 cut(s)	18, 105, 323
Tru9I	TTAA	3 cut(s)	18, 105, 323
TspDTI	ATGAA	3 cut(s)	354, 416, 461
XapI	RAATTY	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	131
XspI	CTAG	2 cut(s)	63, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.