Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Reverse (-)

14932019 .. 14933744

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTTCTTTCCTTCGTTCATGGAGTTTCAGCCTCCTCTTATTGTCATGGATGTTGGCAATCATAAGCAGAACAACCTTGGCGGTTTACCGACCAAGCCCATGGCAACTCGCTCATGCTACTTTTTACGGGGACGAAACTGCATCCGAGACCATGGGAGGAGCTTGTGGATATGGAAACCTGTTCCTCAATGGCTATGGAACAGATACTGTAGCATTGAGCTCAACGCTGTTCAACAATGGATACTCTTGTGGAGCTTGTTTCCAGATCAAATGTTATCAGTCTCCCTGGTGCTTTAAAAATGTTCAGTTCACCACTGTTACCGCCACCAATCTTTGCCCGCCAAACTGGTCCCAGGACTCCAATGCCGGAGGCTGGTGCAACCCTCCTAGGGCTCACTTCGACATGGCCAAGCCTGCCTTCATGAAGATTGCTCAGTGGAAGGCTGGCATTGTTCCAATCATGTACCGCAGGGTACCATGCATAAGGGCTGGGGGTCTCAGATTCTCTTTCCAAGGAAATGGGTACTGGCTCTTGGTCTATGTGATGAATGTGGGAGGAGCTGGTGACATCCAAAACATGTGGGTGAAGGGAACCAGATCTGGGTGGATTAAGATGAGCCATAACTGGGGAGCTTCATACCAGGCTTTTGCAACCTTGAAGGGCCAAGCTCTCTCTTTCAGGGTCACTTCCTACACAACCAAGCAGACCATCATTGCATGGAATGTTGCACCCTCTAATTGGAATGTGGGTTTGACTTACAAGTCAAATACCAACTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

261

Amino Acids

29.04

Weight (kDa)

9.55

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	70 - 156	2.4e-20	Lytic transglycolase
Expansin_C	PF01357	168 - 245	2.2e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	763
Acc65I	GGTACC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	475
AciI	CCGC	4 cut(s)	83, 324, 341, 469
AcoI	YGGCCR	1 cut(s)	408
AfaI	GTAC	3 cut(s)	467, 477, 527
AfiI	CCNNNNNNNGG	5 cut(s)	375, 391, 603, 628, 741
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	2 cut(s)	235, 661
AjnI	CCWGG	3 cut(s)	287, 354, 642
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	6 cut(s)	164, 222, 257, 563, 635, 671
AluI	AGCT	6 cut(s)	164, 222, 257, 563, 635, 671
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	3 cut(s)	143, 288, 503
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	408, 664
Asp718I	GGTACC	1 cut(s)	475
AspA2I	CCTAGG	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	351, 664
AsuHPI	GGTGA	3 cut(s)	304, 578, 598
AvaII	GGWCC	1 cut(s)	351
AvrII	CCTAGG	1 cut(s)	389
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BalI	TGGCCA	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	2 cut(s)	224, 397
Bbv12I	GWGCWC	1 cut(s)	224
BccI	CCATC	1 cut(s)	719
BciT130I	CCWGG	3 cut(s)	289, 356, 644
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	3 cut(s)	143, 288, 503
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	599
BlnI	CCTAGG	1 cut(s)	389
Bme1390I	CCNGG	3 cut(s)	289, 356, 644
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	351, 664
BmiI	GGNNCC	3 cut(s)	353, 477, 595
BmrFI	CCNGG	3 cut(s)	289, 356, 644
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	637
BsaI	GGTCTC	2 cut(s)	143, 503
BsaJI	CCNNGG	7 cut(s)	78, 101, 153, 287, 354, 389, 514
Bsc4I	CCNNNNNNNGG	5 cut(s)	375, 391, 603, 628, 741
Bse1I	ACTGG	3 cut(s)	353, 533, 632
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	289, 356, 644
BseDI	CCNNGG	7 cut(s)	78, 101, 153, 287, 354, 389, 514
BseGI	GGATG	3 cut(s)	57, 143, 570
BseLI	CCNNNNNNNGG	5 cut(s)	375, 391, 603, 628, 741
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	449, 514
BseNI	ACTGG	3 cut(s)	353, 533, 632
BseRI	GAGGAG	3 cut(s)	26, 174, 573
BseYI	CCCAGC	1 cut(s)	491
BshFI	GGCC	2 cut(s)	410, 666
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	146, 337
BslI	CCNNNNNNNGG	5 cut(s)	375, 391, 603, 628, 741
BsmAI	GTCTC	3 cut(s)	143, 288, 503
BsmFI	GGGAC	2 cut(s)	146, 337
BsnI	GGCC	2 cut(s)	410, 666
Bso31I	GGTCTC	2 cut(s)	143, 503
Bsp1286I	GDGCHC	2 cut(s)	224, 397
Bsp143I	GATC	2 cut(s)	267, 599
Bsp19I	CCATGG	2 cut(s)	101, 153
BspACI	CCGC	4 cut(s)	83, 324, 341, 469
BspANI	GGCC	2 cut(s)	410, 666
BspCNI	CTCAG	2 cut(s)	448, 513
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	3 cut(s)	353, 477, 595
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	2 cut(s)	143, 503
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	353, 533, 632
BssECI	CCNNGG	7 cut(s)	78, 101, 153, 287, 354, 389, 514
BssMI	GATC	2 cut(s)	267, 599
BssT1I	CCWWGG	5 cut(s)	78, 101, 153, 389, 514
Bst2UI	CCWGG	3 cut(s)	289, 356, 644
Bst4CI	ACNGT	2 cut(s)	211, 319
BstC8I	GCNNGC	3 cut(s)	341, 417, 448
BstDEI	CTNAG	2 cut(s)	435, 500
BstDSI	CCRYGG	2 cut(s)	101, 153
BstF5I	GGATG	3 cut(s)	57, 143, 570
BstKTI	GATC	2 cut(s)	270, 602
BstMAI	GTCTC	3 cut(s)	143, 288, 503
BstMBI	GATC	2 cut(s)	267, 599
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	3 cut(s)	289, 356, 644
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	3 cut(s)	287, 354, 642
BstSFI	CTRYAG	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	599
BstXI	CCANNNNNNTGG	2 cut(s)	102, 521
BstYI	RGATCY	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	410, 666
BtgI	CCRYGG	2 cut(s)	101, 153
BtsCI	GGATG	3 cut(s)	57, 143, 570
BtsIMutI	CAGTG	2 cut(s)	315, 443
Cac8I	GCNNGC	3 cut(s)	341, 417, 448
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	351, 664
Csp6I	GTAC	3 cut(s)	466, 476, 526
CspCI	CAANNNNNGTGG	2 cut(s)	563, 598
CviQI	GTAC	3 cut(s)	466, 476, 526
DdeI	CTNAG	2 cut(s)	435, 500
DpnI	GATC	2 cut(s)	269, 601
DpnII	GATC	2 cut(s)	267, 599
DraI	TTTAAA	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	763
DseDI	GACNNNNNNGTC	1 cut(s)	763
EaeI	YGGCCR	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	5 cut(s)	78, 101, 153, 389, 514
Eco24I	GRGCYC	2 cut(s)	224, 397
Eco31I	GGTCTC	2 cut(s)	143, 503
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	3 cut(s)	287, 354, 642
EcoT14I	CCWWGG	5 cut(s)	78, 101, 153, 389, 514
EcoT22I	ATGCAT	1 cut(s)	485
EcoT38I	GRGCYC	2 cut(s)	224, 397
ErhI	CCWWGG	5 cut(s)	78, 101, 153, 389, 514
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	2 cut(s)	146, 337
FauI	CCCGC	1 cut(s)	348
FokI	GGATG	3 cut(s)	64, 130, 557
FriOI	GRGCYC	2 cut(s)	224, 397
FspBI	CTAG	1 cut(s)	390
GsaI	CCCAGC	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	410, 666
HapII	CCGG	1 cut(s)	369
HinfI	GANTC	2 cut(s)	359, 504
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	3 cut(s)	304, 578, 598
Hpy166II	GTNNAC	2 cut(s)	88, 312
Hpy188I	TCNGA	3 cut(s)	148, 503, 785
Hpy188III	TCNNGA	2 cut(s)	265, 424
Hpy8I	GTNNAC	2 cut(s)	88, 312
HpyAV	CCTTC	5 cut(s)	23, 430, 436, 583, 655
HpyCH4III	ACNGT	2 cut(s)	211, 319
HpyCH4V	TGCA	6 cut(s)	143, 381, 483, 653, 719, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	2 cut(s)	435, 500
KpnI	GGTACC	1 cut(s)	479
Kzo9I	GATC	2 cut(s)	267, 599
LmnI	GCTCC	4 cut(s)	161, 254, 560, 632
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	3 cut(s)	319, 566, 685
MalI	GATC	2 cut(s)	269, 601
MboI	GATC	2 cut(s)	267, 599
MboII	GAAGA	1 cut(s)	439
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	2 cut(s)	224, 397
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	1 cut(s)	739
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	44, 47, 152, 197, 365, 396, 551, 745
Mox20I	TGGCCA	1 cut(s)	410
Mph1103I	ATGCAT	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	297, 612
MslI	CAYNNNNRTG	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	410
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	3 cut(s)	289, 356, 644
MvaI	CCWGG	3 cut(s)	289, 356, 644
MwoI	GCNNNNNNNGC	1 cut(s)	416
NcoI	CCATGG	2 cut(s)	101, 153
NdeII	GATC	2 cut(s)	267, 599
NlaIV	GGNNCC	3 cut(s)	353, 477, 595
NmuCI	GTSAC	2 cut(s)	566, 685
NsiI	ATGCAT	1 cut(s)	485
NspI	RCATGY	1 cut(s)	583
PagI	TCATGA	1 cut(s)	423
PciI	ACATGT	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PscI	ACATGT	1 cut(s)	579
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	3 cut(s)	287, 354, 642
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	3 cut(s)	287, 354, 642
PspN4I	GGNNCC	3 cut(s)	353, 477, 595
PspPI	GGNCC	2 cut(s)	351, 664
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	3 cut(s)	467, 477, 527
RsaNI	GTAC	3 cut(s)	466, 476, 526
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	297, 612
Sau3AI	GATC	2 cut(s)	267, 599
Sau96I	GGNCC	2 cut(s)	351, 664
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	3 cut(s)	289, 356, 644
SduI	GDGCHC	2 cut(s)	224, 397
SetI	ASST	9 cut(s)	80, 166, 183, 224, 259, 565, 637, 659, 673
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	1 cut(s)	739
SsiI	CCGC	4 cut(s)	83, 324, 341, 469
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	287, 354, 642
StyI	CCWWGG	5 cut(s)	78, 101, 153, 389, 514
TaaI	ACNGT	2 cut(s)	211, 319
TaqI	TCGA	1 cut(s)	402
TasI	AATT	1 cut(s)	739
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	2 cut(s)	297, 612
Tru9I	TTAA	2 cut(s)	297, 612
TscAI	CASTG	2 cut(s)	322, 443
TseFI	GTSAC	2 cut(s)	566, 685
Tsp45I	GTSAC	2 cut(s)	566, 685
TspDTI	ATGAA	5 cut(s)	9, 412, 440, 563, 627
TspRI	CASTG	2 cut(s)	322, 443
VpaK11BI	GGWCC	1 cut(s)	351
XceI	RCATGY	1 cut(s)	583
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.