Rw7G028480

UDP-N-acetylglucosamine transferase subunit ALG13 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004463
Physical Location & Seq
Forward (+)
38807152 .. 38807687
536 bp
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UTR
Exon/CDS
Intron
Rw7G028480.1

Sequence Viewer

Length: 423 bp
ATGGGAGATACTGAGGTTACAATCAAGTGTAAGAAGACAGTTTTTGTGACTGTTGGAACTACTAGTTTTGATGCTCTAGTGAAAGCGGTGGATACAGAAGAGGTTAAAGAAGAGCTGTCAAGAAGAGGGTACACTGACCTTCTCATTCAAATGGGCCGAGATGATGACTCCATTGCGGTAGATTACTTCACTTTTTCATCAAGCATTGCAGAGTATCTGAGAGCAGCATCTCTTACATTGCAGCTTAGGAAGCCGTTAATTGTTGTGGTTAATGAAGATTTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAACAGACAGGAAGCATCTGTACTATTCCCTCATTCCATACCATCCAGGTGATGCCACCCCAGTTGCCAAGCATATCAATAGGTTTCTTGGTTTTGCAGAGGATTGA

Protein Analysis

140

Amino Acids

15.8

Weight (kDa)

4.85

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tran_28_C PF04101 13 - 116 7.5e-11 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 86, 176
AfaI GTAC 2 cut(s) 131, 338
AgsI TTSAA 1 cut(s) 149
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 2 cut(s) 115, 244
AluI AGCT 2 cut(s) 115, 244
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 224, 241
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 377
BaeI ACNNNNGTAYC 1 cut(s) 33
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 236, 253
BccI CCATC 3 cut(s) 277, 300, 366
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 85
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 2 cut(s) 63, 77
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 2 cut(s) 225, 242
BlsI GCNGC 2 cut(s) 226, 243
Bme1390I CCNGG 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 4 cut(s) 61, 236, 340, 358
BmuI ACTGGG 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 3 cut(s) 171, 204, 236
BseBI CCWGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 358
BseMI GCAATG 3 cut(s) 171, 204, 236
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 236, 253
BshFI GGCC 1 cut(s) 156
BsnI GGCC 1 cut(s) 156
BspACI CCGC 2 cut(s) 86, 176
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 4, 210
BspQI GCTCTTC 1 cut(s) 105
BsrDI GCAATG 3 cut(s) 171, 204, 236
BsrI ACTGG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 40, 52
Bst6I CTCTTC 3 cut(s) 93, 105, 118
BstDEI CTNAG 3 cut(s) 12, 218, 245
BstF5I GGATG 1 cut(s) 358
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 236, 253
BstV2I GAAGAC 1 cut(s) 41
BsuI GTATCC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 130, 337
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviJI RGCY 4 cut(s) 115, 156, 244, 253
CviKI_1 RGCY 4 cut(s) 115, 156, 244, 253
CviQI GTAC 2 cut(s) 130, 337
DdeI CTNAG 3 cut(s) 12, 218, 245
Eam1104I CTCTTC 3 cut(s) 93, 105, 118
EarI CTCTTC 3 cut(s) 93, 105, 118
EcoRII CCWGG 1 cut(s) 361
FaiI YATR 2 cut(s) 355, 390
Fnu4HI GCNGC 2 cut(s) 225, 242
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 225, 242
FspBI CTAG 2 cut(s) 63, 77
GluI GCNGC 2 cut(s) 225, 242
HaeIII GGCC 1 cut(s) 156
HinfI GANTC 1 cut(s) 167
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 40, 52
HpyCH4V TGCA 3 cut(s) 209, 241, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 3 cut(s) 12, 218, 245
LguI GCTCTTC 1 cut(s) 105
LpnPI CCDG 4 cut(s) 310, 348, 375, 390
Lsp1109I GCAGC 2 cut(s) 236, 253
LweI GCATC 4 cut(s) 61, 236, 340, 358
MaeI CTAG 2 cut(s) 63, 77
MaeIII GTNAC 2 cut(s) 16, 46
MboII GAAGA 6 cut(s) 46, 110, 122, 135, 287, 323
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 5 cut(s) 7, 94, 119, 356, 409
MseI TTAA 3 cut(s) 105, 257, 270
MslI CAYNNNNRTG 3 cut(s) 149, 297, 363
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 250
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 226, 243
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspPI GGNCC 1 cut(s) 154
RsaI GTAC 2 cut(s) 131, 338
RsaNI GTAC 2 cut(s) 130, 337
RseI CAYNNNNRTG 3 cut(s) 149, 297, 363
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 105, 257, 270
SatI GCNGC 2 cut(s) 225, 242
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 363
SetI ASST 7 cut(s) 18, 105, 117, 141, 246, 367, 401
SfaNI GCATC 4 cut(s) 61, 236, 340, 358
SmiMI CAYNNNNRTG 3 cut(s) 149, 297, 363
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 1 cut(s) 258
SsiI CCGC 2 cut(s) 86, 176
SspMI CTAG 2 cut(s) 63, 77
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 40, 52
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 336
Tru1I TTAA 3 cut(s) 105, 257, 270
Tru9I TTAA 3 cut(s) 105, 257, 270
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 224, 241
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 186, 288
TspRI CASTG 1 cut(s) 139
XspI CTAG 2 cut(s) 63, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.