Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Reverse (-)

6583373 .. 6586894

Gene Structure 3522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCTGCACGTGAACGGAGCCTTGAAGGTCGTAGGAAACGGCCGAAATCGTCCGGAAACGTGACCGCAAATAAACTGAATGTGTTTAGCTTCTTGGCGTATCGCAGTGTTGCTATTCTCCAGTCTCCAGTTTCTCATCTGCTATGCGTCTCCAGGATTACAGTATTGGGGATGGGAGATACTGAGGTTACAATGAAGTCTAAGAAGACGGTTTTTGTAACTGTTGGAACAACTAGTTTTGATGCTCTTGTGAAAGCGATGGATACACGAGAGGTTAAAGAAGAGCTGTCGAGAAGAGGGTACACTGAGATTCTCATTCAAATGGGCCGTGGCTCCTATATTCCCTCAAAGTCTGAAGGAGGTGATGACTCCATTGCGGTAGATTACTTCAATTTTTCATCAAGCATTGCAGACCATGGTCAGGGAGCATATTTGAGACATTGCGCCTTGGGAAGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

154

Amino Acids

16.73

Weight (kDa)

9.51

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tran_28_C	PF04101	13 - 149	4.9e-32	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	2 cut(s)	66, 377
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	375
AcvI	CACGTG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	421
AgsI	TTSAA	3 cut(s)	26, 320, 391
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	2 cut(s)	90, 286
AluI	AGCT	2 cut(s)	90, 286
Alw26I	GTCTC	3 cut(s)	129, 154, 430
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	2 cut(s)	41, 325
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	374
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BauI	CACGAG	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	212
BccI	CCATC	2 cut(s)	166, 253
BceAI	ACGGC	2 cut(s)	56, 312
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	129, 154, 430
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	20, 334
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	232
BoxI	GACNNNNGTC	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	3 cut(s)	104, 111, 136
BsaAI	YACGTR	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	328, 415, 447
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	121, 128
Bse3DI	GCAATG	3 cut(s)	372, 405, 439
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	328, 415, 447
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	3 cut(s)	372, 405, 439
BseMII	CTCAG	2 cut(s)	174, 297
BseNI	ACTGG	2 cut(s)	121, 128
BseX3I	CGGCCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	43, 327
BsiEI	CGRYCG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	3 cut(s)	129, 154, 430
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	43, 327
Bsp13I	TCCGGA	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	2 cut(s)	66, 377
BspANI	GGCC	2 cut(s)	43, 327
BspCNI	CTCAG	2 cut(s)	175, 298
BspEI	TCCGGA	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	20, 334
BspQI	GCTCTTC	1 cut(s)	276
BsrDI	GCAATG	3 cut(s)	372, 405, 439
BsrI	ACTGG	2 cut(s)	121, 128
BssECI	CCNNGG	3 cut(s)	328, 415, 447
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	415, 447
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	163, 211, 223
Bst6I	CTCTTC	2 cut(s)	276, 289
BstBAI	YACGTR	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	183, 201, 306
BstDSI	CCRYGG	2 cut(s)	328, 415
BstF5I	GGATG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	446
BstMAI	GTCTC	3 cut(s)	129, 154, 430
BstMCI	CGRYCG	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	154
BstPAI	GACNNNNGTC	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	212
BstZI	CGGCCG	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	43, 327
BtgI	CCRYGG	2 cut(s)	328, 415
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	112, 303
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	7 cut(s)	21, 43, 90, 286, 327, 333, 456
CviKI_1	RGCY	7 cut(s)	21, 43, 90, 286, 327, 333, 456
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	183, 201, 306
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	276, 289
EarI	CTCTTC	2 cut(s)	276, 289
EclXI	CGGCCG	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	415, 447
Eco52I	CGGCCG	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	375
Eco72I	CACGTG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	415, 447
ErhI	CCWWGG	2 cut(s)	415, 447
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	419
FaiI	YATR	4 cut(s)	145, 339, 417, 430
FatI	CATG	1 cut(s)	415
FokI	GGATG	1 cut(s)	184
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	445
GsuI	CTGGAG	3 cut(s)	104, 111, 136
HaeIII	GGCC	2 cut(s)	43, 327
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	310, 368
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	14, 303
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	54, 291
Hpy8I	GTNNAC	2 cut(s)	14, 303
HpyAV	CCTTC	2 cut(s)	20, 350
HpyCH4III	ACNGT	3 cut(s)	163, 211, 223
HpyCH4IV	ACGT	2 cut(s)	10, 60
HpyCH4V	TGCA	2 cut(s)	8, 410
HpyF3I	CTNAG	3 cut(s)	183, 201, 306
HpySE526I	ACGT	2 cut(s)	10, 60
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	444
Kpn2I	TCCGGA	1 cut(s)	53
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	3 cut(s)	18, 338, 425
LpnPI	CCDG	6 cut(s)	67, 134, 139, 141, 166, 407
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	2 cut(s)	10, 60
MaeIII	GTNAC	3 cut(s)	61, 187, 217
MboII	GAAGA	3 cut(s)	217, 293, 306
MluCI	AATT	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	178, 265, 290, 353, 355
MroI	TCCGGA	1 cut(s)	53
MseI	TTAA	2 cut(s)	276, 460
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	415
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	2 cut(s)	20, 334
NmuCI	GTSAC	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	152
PleI	GAGTC	1 cut(s)	362
PmaCI	CACGTG	1 cut(s)	11
PmlI	CACGTG	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	11
PshAI	GACNNNNGTC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	152
PspCI	CACGTG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	20, 334
PspPI	GGNCC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	276, 460
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	8 cut(s)	13, 31, 63, 92, 189, 276, 288, 364
SfaNI	GCATC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	320
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	2 cut(s)	66, 377
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	2 cut(s)	415, 447
TaaI	ACNGT	3 cut(s)	163, 211, 223
TaiI	ACGT	2 cut(s)	13, 63
TaqI	TCGA	1 cut(s)	290
TasI	AATT	1 cut(s)	391
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	276, 460
Tru9I	TTAA	2 cut(s)	276, 460
TscAI	CASTG	2 cut(s)	112, 310
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	209, 387
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	2 cut(s)	112, 310
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.