RchiOBHm_Chr7g0218901

UDP-N-acetylglucosamine transferase subunit ALG13 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004463
Physical Location & Seq
Forward (+)
37118034 .. 37119908
1875 bp
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UTR
Exon/CDS
Intron
PRQ19596

Sequence Viewer

Length: 450 bp
ATGGGAGATAAAGAGGTTAAAGAAGAGCTGTCAAGAAGAGGGTACACTGACCTTCTCATTCAAATGGGCCGTGGCTCCTATATTCCCTCAAAGTCTGAAGGAGATGATGACTCCATTGCGGTAGATTACTTCACTTTTTCATCAAGCATTGCAGAGTATCTGAGAGCAGCATCTCTTGTAATTAGTCATGCAGGTTCAGGGAGCATATTTGAGACATTGCAGCTTAGGAAGCCCTTAATTGTCGTGGTTAATGAAGATTTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAACAGACAGGAAGCATCTGTACTATGCTCACCCACAGACACTTTGTCGCATTATAGCAGATATGGAAGTGGAGTCCCTCACTCCATACCATCCAGGTGATGCCACCCCAGTTGCCAAGCATATCAATAGGTTTCTTGGTTTTGCAGAGGATTGA

Protein Analysis

149

Amino Acids

16.71

Weight (kDa)

4.87

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tran_28_C PF04101 7 - 139 6.4e-26 Glycosyltransferase family 28 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AciI CCGC 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 44, 317
AgsI TTSAA 1 cut(s) 62
AhdI GACNNNNNGTC 1 cut(s) 339
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 2 cut(s) 28, 223
AluI AGCT 2 cut(s) 28, 223
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 167, 220
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 317, 404
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
BbvI GCAGC 2 cut(s) 179, 232
BccI CCATC 3 cut(s) 256, 279, 393
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 182
BisI GCNGC 2 cut(s) 168, 221
BlsI GCNGC 2 cut(s) 169, 222
Bme1390I CCNGG 1 cut(s) 390
BmeRI GACNNNNNGTC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 390
BmrI ACTGGG 1 cut(s) 398
BmsI GCATC 3 cut(s) 179, 319, 385
BmuI ACTGGG 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 404
Bse3DI GCAATG 3 cut(s) 114, 147, 215
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 385
BseMI GCAATG 3 cut(s) 114, 147, 215
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 404
BseXI GCAGC 2 cut(s) 179, 232
BshFI GGCC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 1 cut(s) 69
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 18
BsrDI GCAATG 3 cut(s) 114, 147, 215
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 390
Bst6I CTCTTC 2 cut(s) 18, 31
BstDEI CTNAG 2 cut(s) 161, 224
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 2 cut(s) 179, 232
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 43, 316
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 1 cut(s) 188
CviJI RGCY 5 cut(s) 28, 69, 75, 223, 232
CviKI_1 RGCY 5 cut(s) 28, 69, 75, 223, 232
CviQI GTAC 2 cut(s) 43, 316
DdeI CTNAG 2 cut(s) 161, 224
DriI GACNNNNNGTC 1 cut(s) 339
Eam1104I CTCTTC 2 cut(s) 18, 31
Eam1105I GACNNNNNGTC 1 cut(s) 339
EarI CTCTTC 2 cut(s) 18, 31
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 388
FaeI CATG 1 cut(s) 191
FaiI YATR 8 cut(s) 81, 189, 206, 321, 350, 359, 382, 417
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 168, 221
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 168, 221
GluI GCNGC 2 cut(s) 168, 221
HaeIII GGCC 1 cut(s) 69
Hin1II CATG 1 cut(s) 191
HinfI GANTC 2 cut(s) 110, 368
HphI GGTGA 2 cut(s) 317, 404
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 97, 162
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 62, 92
HpyCH4V TGCA 4 cut(s) 152, 191, 220, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 161, 224
Hsp92II CATG 1 cut(s) 191
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 80, 201
LpnPI CCDG 6 cut(s) 177, 183, 289, 375, 402, 417
Lsp1109I GCAGC 2 cut(s) 179, 232
LweI GCATC 3 cut(s) 179, 319, 385
MboII GAAGA 4 cut(s) 35, 48, 266, 302
MluCI AATT 2 cut(s) 180, 237
MlyI GAGTC 2 cut(s) 104, 377
MnlI CCTC 5 cut(s) 7, 32, 97, 383, 436
MseI TTAA 3 cut(s) 18, 236, 249
MslI CAYNNNNRTG 3 cut(s) 62, 276, 390
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 229
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 169, 222
PleI GAGTC 2 cut(s) 104, 376
PpsI GAGTC 2 cut(s) 104, 376
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 67
RsaI GTAC 2 cut(s) 44, 317
RsaNI GTAC 2 cut(s) 43, 316
RseI CAYNNNNRTG 3 cut(s) 62, 276, 390
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 18, 236, 249
SatI GCNGC 2 cut(s) 168, 221
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 104, 377
ScrFI CCNGG 1 cut(s) 390
SetI ASST 7 cut(s) 18, 30, 54, 196, 225, 394, 428
SfaNI GCATC 3 cut(s) 179, 319, 385
SmiMI CAYNNNNRTG 3 cut(s) 62, 276, 390
Sse9I AATT 2 cut(s) 180, 237
SsiI CCGC 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 388
TasI AATT 2 cut(s) 180, 237
TatI WGTACW 1 cut(s) 315
Tru1I TTAA 3 cut(s) 18, 236, 249
Tru9I TTAA 3 cut(s) 18, 236, 249
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 167, 220
TspDTI ATGAA 2 cut(s) 129, 267
TspRI CASTG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.