Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Forward (+)

30341338 .. 30341877

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGAGATACTGAGGTTACAATCAAGTGTAAGAAGACAGTTTTTGTGACTGTTGGAACTACTAGTTTTGATGCTCTAGTGAAAGCGGTGGATACAGAAGAGGTTAAAGAAGAGCTGTCAAGAAGAGGGTACACTGACCTTCTCATTCAAATGGGCCGTGGCTCCTATATTCCCTCAAAGTCTGAAGAAGGAGATGATGACTCCATTGCGGTAGATTACTTCACTTTTTCATCAAGCATTGCAGAGTATCTGAGAGCAGCATCTCTTGTAATTAGTCATGCAGGTTCAGGGAGCATATTTGAGACATTGCAGCTTAGGAAGCCCTTAATTGTCGTGGTTAATGAAGATTTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAACAGACAGGAAGCATCTGTACTATGCTCACCCACAGACACTTTGTCGCATTATAGCAGATATGGAAGTGGAGTCCCTCATTCCATACCATCCAGGTGATGCCACCCCAGTTGCCAAGCATATCAATAGGTTTCTTGGTTTTGCAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

179

Amino Acids

19.93

Weight (kDa)

4.8

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tran_28_C	PF04101	13 - 163	3.4e-32	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AciI	CCGC	2 cut(s)	86, 209
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	131, 407
AgsI	TTSAA	1 cut(s)	149
AhdI	GACNNNNNGTC	1 cut(s)	429
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	2 cut(s)	115, 313
AluI	AGCT	2 cut(s)	115, 313
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	257, 310
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	407, 494
BaeI	ACNNNNGTAYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	269, 322
BccI	CCATC	3 cut(s)	346, 369, 483
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	480
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	296
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	2 cut(s)	63, 77
BfuAI	ACCTGC	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	258, 311
BlsI	GCNGC	2 cut(s)	259, 312
Bme1390I	CCNGG	1 cut(s)	480
BmeRI	GACNNNNNGTC	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	480
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	4 cut(s)	61, 269, 409, 475
BmuI	ACTGGG	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	3 cut(s)	204, 237, 305
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	475
BseMI	GCAATG	3 cut(s)	204, 237, 305
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	269, 322
BshFI	GGCC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	86, 209
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	4, 243
BspLI	GGNNCC	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	3 cut(s)	204, 237, 305
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	40, 52
Bst6I	CTCTTC	3 cut(s)	93, 105, 118
BstDEI	CTNAG	3 cut(s)	12, 251, 314
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	269, 322
BstV2I	GAAGAC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	130, 406
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	5 cut(s)	115, 156, 162, 313, 322
CviKI_1	RGCY	5 cut(s)	115, 156, 162, 313, 322
CviQI	GTAC	2 cut(s)	130, 406
DdeI	CTNAG	3 cut(s)	12, 251, 314
DriI	GACNNNNNGTC	1 cut(s)	429
Eam1104I	CTCTTC	3 cut(s)	93, 105, 118
Eam1105I	GACNNNNNGTC	1 cut(s)	429
EarI	CTCTTC	3 cut(s)	93, 105, 118
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	478
FaeI	CATG	1 cut(s)	281
FaiI	YATR	8 cut(s)	168, 279, 296, 411, 440, 449, 472, 507
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	258, 311
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	258, 311
FspBI	CTAG	2 cut(s)	63, 77
GluI	GCNGC	2 cut(s)	258, 311
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	281
HinfI	GANTC	2 cut(s)	200, 458
HphI	GGTGA	2 cut(s)	407, 494
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	2 cut(s)	184, 252
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	149, 182
HpyCH4III	ACNGT	2 cut(s)	40, 52
HpyCH4V	TGCA	4 cut(s)	242, 281, 310, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	3 cut(s)	12, 251, 314
Hsp92II	CATG	1 cut(s)	281
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	167, 291
LpnPI	CCDG	6 cut(s)	267, 273, 379, 465, 492, 507
Lsp1109I	GCAGC	2 cut(s)	269, 322
LweI	GCATC	4 cut(s)	61, 269, 409, 475
MaeI	CTAG	2 cut(s)	63, 77
MaeIII	GTNAC	2 cut(s)	16, 46
MboII	GAAGA	7 cut(s)	46, 110, 122, 135, 197, 356, 392
MluCI	AATT	2 cut(s)	270, 327
MlyI	GAGTC	2 cut(s)	194, 467
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	6 cut(s)	7, 94, 119, 184, 473, 526
MseI	TTAA	3 cut(s)	105, 326, 339
MslI	CAYNNNNRTG	3 cut(s)	149, 366, 480
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	259, 312
PleI	GAGTC	2 cut(s)	194, 466
PpsI	GAGTC	2 cut(s)	194, 466
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	131, 407
RsaNI	GTAC	2 cut(s)	130, 406
RseI	CAYNNNNRTG	3 cut(s)	149, 366, 480
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	105, 326, 339
SatI	GCNGC	2 cut(s)	258, 311
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	194, 467
ScrFI	CCNGG	1 cut(s)	480
SetI	ASST	8 cut(s)	18, 105, 117, 141, 286, 315, 484, 518
SfaNI	GCATC	4 cut(s)	61, 269, 409, 475
SmiMI	CAYNNNNRTG	3 cut(s)	149, 366, 480
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	2 cut(s)	270, 327
SsiI	CCGC	2 cut(s)	86, 209
SspMI	CTAG	2 cut(s)	63, 77
StyD4I	CCNGG	1 cut(s)	478
TaaI	ACNGT	2 cut(s)	40, 52
TasI	AATT	2 cut(s)	270, 327
TatI	WGTACW	1 cut(s)	405
Tru1I	TTAA	3 cut(s)	105, 326, 339
Tru9I	TTAA	3 cut(s)	105, 326, 339
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	257, 310
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	219, 357
TspRI	CASTG	1 cut(s)	139
XspI	CTAG	2 cut(s)	63, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.