Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Reverse (-)

32156072 .. 32156801

Gene Structure 730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGAAGCTTGGGGGAAGGGGTGAAGCAAAAGAAGATCATAACCCTCGCAAGGATTTCTGCTTCTATGGGAGATACTGAGGTTACAATCAAGTGTAAGAAGACAGTTTTTGTGACTGTTGGAACTACTGGCTTTGATGCTCTAGTGAAAGCGGTGGATACAGAAGAGGTTAAAGAAGAGCTGTCAAGAAGAGGGTACACTGACCTTCTCATTCAAATGGGCCGTGGCTCCTATATTCCCTCAAAGTCTGAAGGAGATGATGACTCCATTGCGGTAGATTACTTCACTTTTTCATCAAGCATTGCAGAGTATCTGAGAGCAGCATCTCTTGTAATTAGTCATGCAGGTTCAGGGAGCATATTTGAGACATTGCAGCTTAGGAAGCCCTTAATTGTCGTGGTTAATGAAGATTTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAACAGACAGGAATCATCTGTACTATGCTCACCCACAGACACTTTGTCGCATTATAGCAGATATGGAAGTAAGTGGAGTCCCTCACTCCATACCATCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

184

Amino Acids

20.17

Weight (kDa)

5.38

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tran_28_C	PF04101	35 - 171	1.6e-32	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
AciI	CCGC	2 cut(s)	152, 272
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	197, 470
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	215
AhdI	GACNNNNNGTC	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	3 cut(s)	9, 181, 376
AluI	AGCT	3 cut(s)	9, 181, 376
Alw26I	GTCTC	1 cut(s)	359
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	320, 373
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	34, 470
BaeI	ACNNNNGTAYC	2 cut(s)	66, 99
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	332, 385
BccI	CCATC	3 cut(s)	409, 432, 550
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	547
BciVI	GTATCC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	321, 374
BlsI	GCNGC	2 cut(s)	322, 375
Bme1390I	CCNGG	1 cut(s)	547
BmeRI	GACNNNNNGTC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	127, 332
BpiI	GAAGAC	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	3 cut(s)	267, 300, 368
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	542
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	3 cut(s)	267, 300, 368
BseMII	CTCAG	2 cut(s)	69, 305
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	332, 385
BshFI	GGCC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	152, 272
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	70, 306
BspLI	GGNNCC	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	171
BsrDI	GCAATG	3 cut(s)	267, 300, 368
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	2 cut(s)	106, 118
Bst6I	CTCTTC	3 cut(s)	159, 171, 184
BstDEI	CTNAG	3 cut(s)	78, 314, 377
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	542
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstV1I	GCAGC	2 cut(s)	332, 385
BstV2I	GAAGAC	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	542
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	196, 469
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	7 cut(s)	9, 132, 181, 222, 228, 376, 385
CviKI_1	RGCY	7 cut(s)	9, 132, 181, 222, 228, 376, 385
CviQI	GTAC	2 cut(s)	196, 469
DdeI	CTNAG	3 cut(s)	78, 314, 377
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
DriI	GACNNNNNGTC	1 cut(s)	492
Eam1104I	CTCTTC	3 cut(s)	159, 171, 184
Eam1105I	GACNNNNNGTC	1 cut(s)	492
EarI	CTCTTC	3 cut(s)	159, 171, 184
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	545
FaeI	CATG	1 cut(s)	344
FaiI	YATR	9 cut(s)	41, 68, 234, 342, 359, 474, 503, 512, 539
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	321, 374
FokI	GGATG	1 cut(s)	529
Fsp4HI	GCNGC	2 cut(s)	321, 374
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	2 cut(s)	321, 374
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	344
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	3 cut(s)	263, 460, 525
HphI	GGTGA	2 cut(s)	34, 470
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	250, 315
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	11, 215, 245
HpyCH4III	ACNGT	2 cut(s)	106, 118
HpyCH4V	TGCA	3 cut(s)	305, 344, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	3 cut(s)	78, 314, 377
Hsp92II	CATG	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	233, 354
LpnPI	CCDG	5 cut(s)	114, 330, 336, 442, 532
Lsp1109I	GCAGC	2 cut(s)	332, 385
LweI	GCATC	2 cut(s)	127, 332
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	82, 112
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	7 cut(s)	46, 112, 176, 188, 201, 419, 455
MluCI	AATT	2 cut(s)	333, 390
MlyI	GAGTC	2 cut(s)	257, 534
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	56, 73, 160, 185, 250, 540
MseI	TTAA	3 cut(s)	171, 389, 402
MslI	CAYNNNNRTG	3 cut(s)	215, 429, 547
MspR9I	CCNGG	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	322, 375
PleI	GAGTC	2 cut(s)	257, 533
PpsI	GAGTC	2 cut(s)	257, 533
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	220
RsaI	GTAC	2 cut(s)	197, 470
RsaNI	GTAC	2 cut(s)	196, 469
RseI	CAYNNNNRTG	3 cut(s)	215, 429, 547
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	171, 389, 402
SatI	GCNGC	2 cut(s)	321, 374
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	2 cut(s)	257, 534
ScrFI	CCNGG	1 cut(s)	547
SetI	ASST	8 cut(s)	11, 84, 171, 183, 207, 349, 378, 551
SfaNI	GCATC	2 cut(s)	127, 332
SmiMI	CAYNNNNRTG	3 cut(s)	215, 429, 547
Sse9I	AATT	2 cut(s)	333, 390
SsiI	CCGC	2 cut(s)	152, 272
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	545
TaaI	ACNGT	2 cut(s)	106, 118
TasI	AATT	2 cut(s)	333, 390
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	3 cut(s)	171, 389, 402
Tru9I	TTAA	3 cut(s)	171, 389, 402
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	320, 373
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	282, 420
TspRI	CASTG	1 cut(s)	205
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.