Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Reverse (-)

32197916 .. 32198405

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGAGATACTGAGGTTACAATCAAGTGTAAGAAGACAGTTTTTGTGACTGTTGGAACTACTAGTTTTGATGCTCTAGTGAAAGCGGTGGATACAGAAGAGGTTAAAGAAGAGCTGTCAAGAAGAGGGTACACTGACCTTCTCATTCAAATGGGCCGTGGCTCCTATATTCCCTCAAAGTCTGAAGGAGATGATGACTCCATTGTGCTTAGGAAGCCCTTAATTGTCGTGGTTAATGAAGATTTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAACAGACAGGAAGCATCTGTACTATGCTCACCCACAGACACTTTGTCGCATTATAGCAGATATGGAAGTAAGTGGAGTCCCTCACTCCATACCATCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

128

Amino Acids

14.22

Weight (kDa)

5.02

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	131, 302
AgsI	TTSAA	1 cut(s)	149
AhdI	GACNNNNNGTC	1 cut(s)	324
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AoxI	GGCC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	302
BaeI	ACNNNNGTAYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	284, 316
BbsI	GAAGAC	1 cut(s)	41
BccI	CCATC	3 cut(s)	241, 264, 382
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	85
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	2 cut(s)	63, 77
BfuI	GTATCC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	379
BmeRI	GACNNNNNGTC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	2 cut(s)	61, 304
BpiI	GAAGAC	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	40, 52
Bst6I	CTCTTC	3 cut(s)	93, 105, 118
BstDEI	CTNAG	2 cut(s)	12, 209
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	130, 301
CviJI	RGCY	4 cut(s)	115, 156, 162, 217
CviKI_1	RGCY	4 cut(s)	115, 156, 162, 217
CviQI	GTAC	2 cut(s)	130, 301
DdeI	CTNAG	2 cut(s)	12, 209
DriI	GACNNNNNGTC	1 cut(s)	324
Eam1104I	CTCTTC	3 cut(s)	93, 105, 118
Eam1105I	GACNNNNNGTC	1 cut(s)	324
EarI	CTCTTC	3 cut(s)	93, 105, 118
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	377
FaiI	YATR	5 cut(s)	168, 306, 335, 344, 371
FaqI	GGGAC	1 cut(s)	344
FokI	GGATG	1 cut(s)	361
FspBI	CTAG	2 cut(s)	63, 77
HaeIII	GGCC	1 cut(s)	156
HinfI	GANTC	2 cut(s)	197, 357
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	149, 179
HpyCH4III	ACNGT	2 cut(s)	40, 52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	12, 209
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	2 cut(s)	274, 364
LweI	GCATC	2 cut(s)	61, 304
MaeI	CTAG	2 cut(s)	63, 77
MaeIII	GTNAC	2 cut(s)	16, 46
MboII	GAAGA	6 cut(s)	46, 110, 122, 135, 251, 287
MluCI	AATT	1 cut(s)	222
MlyI	GAGTC	2 cut(s)	191, 366
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	7, 94, 119, 184, 372
MseI	TTAA	3 cut(s)	105, 221, 234
MslI	CAYNNNNRTG	3 cut(s)	149, 261, 379
MspR9I	CCNGG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	105
PleI	GAGTC	2 cut(s)	191, 365
PpsI	GAGTC	2 cut(s)	191, 365
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	131, 302
RsaNI	GTAC	2 cut(s)	130, 301
RseI	CAYNNNNRTG	3 cut(s)	149, 261, 379
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	105, 221, 234
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	191, 366
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	5 cut(s)	18, 105, 117, 141, 383
SfaNI	GCATC	2 cut(s)	61, 304
SgeI	CNNG	7 cut(s)	37, 75, 89, 132, 170, 241, 301
SmiMI	CAYNNNNRTG	3 cut(s)	149, 261, 379
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	63, 77
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	40, 52
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	300
Tru1I	TTAA	3 cut(s)	105, 221, 234
Tru9I	TTAA	3 cut(s)	105, 221, 234
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	139
XspI	CTAG	2 cut(s)	63, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.