Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Forward (+)

18782858 .. 18784234

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27531.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGAGATACTGAGGTTACATTAAAGTGTAAGAAGACAGTTTTTGTAACTGTCGGAACTACTAGTTTTGATGCTCTAGTGAAAGCGGTGGATACACAAGAGGTTAAGGAAGAGCTGTCAAGAAGAGGGTACACTAACCTTCTCATTCAAATGGGTCGTGGCTCCTATATTCCCTCAAAGTCTGAAGGAGATGATGACTCCATTGTGGTAGATTACTTCACTTTTTCATCAAGCATTGCAGAGTATCTGAGAGCAGCATCTCTTGTCATTAGTCATGCAGGGTCAGGGAGCATATTTGAGACATTGCAGCTTAGGAAGCCATTAATTGTTGTGGTTAATGAAGATTTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAGCTGACAGGAAGCATCTGTACTGTGCTCACCCACAGACACTTTGTCATATTATAGCAGATATGAAAGTGGAGTCCCTCATTCCATACCATCCCGGTGATGCCACCCCAGTTGCCAAGCTTATCAATAGGTCAAGGTTCCTTACTCCTGAAGAACTAGTCCTGATTCTGGAGTGTGCTTCTATTTCCGTCCAAGAGATGGCTGGGTCCAGGTCCATCTCTTGTATTTTATTACTTATGGTACTTCAACCAAAACTGCGAATTTATAAATACAAGGATTTTTCATTGTTGCTGGGTTTGTTTGGTGAATGGAAATTCTTGTATTTCTGTATTGTCCATCCTGTTTGTCCACCTTATAAACCAAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

251

Amino Acids

28.01

Weight (kDa)

5.82

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tran_28_C	PF04101	13 - 162	3.7e-32	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	648, 738
AccB7I	CCANNNNNTGG	1 cut(s)	580
AciI	CCGC	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	642, 695
AcuI	CTGAAG	2 cut(s)	204, 552
AfaI	GTAC	3 cut(s)	131, 404, 624
AfiI	CCNNNNNNNGG	2 cut(s)	550, 580
AgsI	TTSAA	2 cut(s)	149, 629
AhdI	GACNNNNNGTC	1 cut(s)	426
AhlI	ACTAGT	2 cut(s)	62, 538
AjnI	CCWGG	1 cut(s)	590
AluBI	AGCT	4 cut(s)	115, 310, 386, 502
AluI	AGCT	4 cut(s)	115, 310, 386, 502
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	254, 307
ApoI	RAATTY	2 cut(s)	642, 695
AseI	ATTAAT	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	588, 594
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	3 cut(s)	404, 491, 698
AvaII	GGWCC	2 cut(s)	588, 594
BaeI	ACNNNNGTAYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	266, 319
BccI	CCATC	6 cut(s)	343, 366, 480, 574, 605, 726
BciT130I	CCWGG	1 cut(s)	592
BciVI	GTATCC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	293
BcuI	ACTAGT	2 cut(s)	62, 538
BfaI	CTAG	4 cut(s)	63, 77, 383, 539
BfuI	GTATCC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	255, 308
BlsI	GCNGC	2 cut(s)	256, 309
Bme1390I	CCNGG	2 cut(s)	477, 592
Bme18I	GGWCC	2 cut(s)	588, 594
BmeRI	GACNNNNNGTC	1 cut(s)	426
BmgT120I	GGNCC	2 cut(s)	588, 594
BmiI	GGNNCC	3 cut(s)	163, 521, 589
BmrFI	CCNGG	2 cut(s)	477, 592
BmrI	ACTGGG	1 cut(s)	485
BmsI	GCATC	4 cut(s)	61, 266, 406, 472
BmuI	ACTGGG	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 580
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	2 cut(s)	234, 302
BseBI	CCWGG	1 cut(s)	592
BseGI	GGATG	2 cut(s)	472, 718
BseLI	CCNNNNNNNGG	2 cut(s)	550, 580
BseMI	GCAATG	2 cut(s)	234, 302
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	266, 319
BseYI	CCCAGC	2 cut(s)	584, 673
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	550, 580
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	412
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	4, 240
BspLI	GGNNCC	3 cut(s)	163, 521, 589
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	234, 302
BsrI	ACTGG	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	592
Bst4CI	ACNGT	3 cut(s)	40, 52, 407
Bst6I	CTCTTC	2 cut(s)	105, 118
BstDEI	CTNAG	3 cut(s)	12, 248, 311
BstF5I	GGATG	2 cut(s)	472, 718
BstMAI	GTCTC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	592
BstSCI	CCNGG	2 cut(s)	475, 590
BstV1I	GCAGC	2 cut(s)	266, 319
BstV2I	GAAGAC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	472, 718
Cfr13I	GGNCC	2 cut(s)	588, 594
Csp6I	GTAC	3 cut(s)	130, 403, 623
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	7 cut(s)	115, 162, 310, 319, 386, 502, 584
CviKI_1	RGCY	7 cut(s)	115, 162, 310, 319, 386, 502, 584
CviQI	GTAC	3 cut(s)	130, 403, 623
DdeI	CTNAG	3 cut(s)	12, 248, 311
DriI	GACNNNNNGTC	1 cut(s)	426
Eam1104I	CTCTTC	2 cut(s)	105, 118
Eam1105I	GACNNNNNGTC	1 cut(s)	426
EarI	CTCTTC	2 cut(s)	105, 118
Eco47I	GGWCC	2 cut(s)	588, 594
Eco57I	CTGAAG	2 cut(s)	204, 552
EcoRII	CCWGG	1 cut(s)	590
FaeI	CATG	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	255, 308
FokI	GGATG	2 cut(s)	459, 705
Fsp4HI	GCNGC	2 cut(s)	255, 308
FspBI	CTAG	4 cut(s)	63, 77, 383, 539
GluI	GCNGC	2 cut(s)	255, 308
GsaI	CCCAGC	2 cut(s)	588, 677
GsuI	CTGGAG	1 cut(s)	572
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	197, 455, 547
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	3 cut(s)	404, 491, 698
Hpy166II	GTNNAC	2 cut(s)	132, 731
Hpy188I	TCNGA	3 cut(s)	56, 184, 249
Hpy188III	TCNNGA	4 cut(s)	120, 530, 544, 551
Hpy8I	GTNNAC	2 cut(s)	132, 731
HpyAV	CCTTC	2 cut(s)	149, 179
HpyCH4III	ACNGT	3 cut(s)	40, 52, 407
HpyCH4V	TGCA	3 cut(s)	239, 278, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	3 cut(s)	12, 248, 311
Hsp92II	CATG	1 cut(s)	278
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	167, 288
Lsp1109I	GCAGC	2 cut(s)	266, 319
LweI	GCATC	4 cut(s)	61, 266, 406, 472
MaeI	CTAG	4 cut(s)	63, 77, 383, 539
MaeIII	GTNAC	2 cut(s)	16, 46
MboII	GAAGA	6 cut(s)	46, 122, 135, 353, 389, 545
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	3 cut(s)	324, 642, 695
MlyI	GAGTC	2 cut(s)	191, 464
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	7, 94, 119, 184, 470
MseI	TTAA	4 cut(s)	23, 105, 323, 336
MslI	CAYNNNNRTG	4 cut(s)	25, 149, 363, 477
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	477, 592
MvaI	CCWGG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	477
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	3 cut(s)	163, 521, 589
PciSI	GCTCTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	547
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	256, 309
PleI	GAGTC	2 cut(s)	191, 463
PpsI	GAGTC	2 cut(s)	191, 463
PshBI	ATTAAT	1 cut(s)	323
PsiI	TTATAA	2 cut(s)	648, 738
Psp6I	CCWGG	1 cut(s)	590
PspFI	CCCAGC	2 cut(s)	584, 673
PspGI	CCWGG	1 cut(s)	590
PspN4I	GGNNCC	3 cut(s)	163, 521, 589
PspPI	GGNCC	2 cut(s)	588, 594
RsaI	GTAC	3 cut(s)	131, 404, 624
RsaNI	GTAC	3 cut(s)	130, 403, 623
RseI	CAYNNNNRTG	4 cut(s)	25, 149, 363, 477
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	23, 105, 323, 336
SatI	GCNGC	2 cut(s)	255, 308
Sau96I	GGNCC	2 cut(s)	588, 594
SchI	GAGTC	2 cut(s)	191, 464
ScrFI	CCNGG	2 cut(s)	477, 592
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	4 cut(s)	61, 266, 406, 472
SinI	GGWCC	2 cut(s)	588, 594
SmiMI	CAYNNNNRTG	4 cut(s)	25, 149, 363, 477
SpeI	ACTAGT	2 cut(s)	62, 538
Sse9I	AATT	3 cut(s)	324, 642, 695
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	4 cut(s)	63, 77, 383, 539
StyD4I	CCNGG	2 cut(s)	475, 590
TaaI	ACNGT	3 cut(s)	40, 52, 407
TasI	AATT	3 cut(s)	324, 642, 695
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	4 cut(s)	23, 105, 323, 336
Tru9I	TTAA	4 cut(s)	23, 105, 323, 336
TseI	GCWGC	2 cut(s)	254, 307
TspDTI	ATGAA	4 cut(s)	216, 354, 461, 654
TspGWI	ACGGA	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	580
VpaK11BI	GGWCC	2 cut(s)	588, 594
VspI	ATTAAT	1 cut(s)	323
XapI	RAATTY	2 cut(s)	642, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XspI	CTAG	4 cut(s)	63, 77, 383, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.