Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Forward (+)

46304699 .. 46307427

Gene Structure 2729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGAGATACTGAGGTAACAATGAAGTCTAAGAAGACGGTTTTTGTAACTGTTGGAACTACTAGTTTTGATGCTCTAGTGAAAGCGGTGGACACACGAGAGGTTAAAGAAGAGCTGTCAAGAAGAGGGTACACTGAGATTCTCATTCAAATGGGCCGTGGCTCCTATATTCCCTCAAAGTCTGACGGAGGTGATGACTCCATTGCGGTAGATTACTTCACTTTTTCATCAAGCATTGCAGACTATCTGAGAGCAGCATCTCTCGTCATTAGCCATGCAGGGTCAGGGAGCATATTTGAGACATTGCGGCTTGGGAAGCCTTTAATTGTTGTGGTTAATGAAGATTTGATGGACAACCATCAAAGTGAGTTGGCAGAAGAACTAGCAGACAGGAAGCATCTGTACTATGCTCACCCAAAGACACTTCAACACATTATAGCAGATATGAAAGTGGAGTCCCTCATTCCATACCATCCAGGTGATGCCACACCAGTCGCCAAGCTTATCAATAGGTTTCTTGGTTTTTCAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

178

Amino Acids

19.66

Weight (kDa)

5.35

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tran_28_C	PF04101	13 - 164	4.9e-35	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	86, 206, 307
AfaI	GTAC	2 cut(s)	131, 404
AgsI	TTSAA	2 cut(s)	149, 428
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	2 cut(s)	115, 502
AluI	AGCT	2 cut(s)	115, 502
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	203, 404, 491
BaeI	ACNNNNGTAYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	3 cut(s)	343, 366, 480
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	293
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	3 cut(s)	63, 77, 383
BisI	GCNGC	2 cut(s)	255, 308
BlsI	GCNGC	2 cut(s)	256, 309
Bme1390I	CCNGG	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	4 cut(s)	61, 266, 406, 472
BpiI	GAAGAC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	3 cut(s)	201, 234, 302
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	472
BseMI	GCAATG	3 cut(s)	201, 234, 302
BseMII	CTCAG	2 cut(s)	126, 239
BseNI	ACTGG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	156
BspACI	CCGC	3 cut(s)	86, 206, 307
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	3 cut(s)	4, 127, 240
BspLI	GGNNCC	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	3 cut(s)	201, 234, 302
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	157
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	40, 52
Bst6I	CTCTTC	2 cut(s)	105, 118
BstDEI	CTNAG	4 cut(s)	12, 30, 135, 248
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	130, 403
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	7 cut(s)	115, 156, 162, 273, 310, 319, 502
CviKI_1	RGCY	7 cut(s)	115, 156, 162, 273, 310, 319, 502
CviQI	GTAC	2 cut(s)	130, 403
DdeI	CTNAG	4 cut(s)	12, 30, 135, 248
Eam1104I	CTCTTC	2 cut(s)	105, 118
EarI	CTCTTC	2 cut(s)	105, 118
EcoRII	CCWGG	1 cut(s)	475
FaeI	CATG	1 cut(s)	278
FaiI	YATR	7 cut(s)	168, 276, 293, 408, 437, 446, 469
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	255, 308
FokI	GGATG	1 cut(s)	459
Fsp4HI	GCNGC	2 cut(s)	255, 308
FspBI	CTAG	3 cut(s)	63, 77, 383
GluI	GCNGC	2 cut(s)	255, 308
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	139, 197, 455
HphI	GGTGA	3 cut(s)	203, 404, 491
Hpy166II	GTNNAC	2 cut(s)	91, 132
Hpy188I	TCNGA	3 cut(s)	184, 249, 529
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	2 cut(s)	91, 132
HpyCH4III	ACNGT	2 cut(s)	40, 52
HpyCH4V	TGCA	2 cut(s)	239, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	4 cut(s)	12, 30, 135, 248
Hsp92II	CATG	1 cut(s)	278
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	167, 288
LpnPI	CCDG	6 cut(s)	264, 270, 376, 462, 489, 504
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	4 cut(s)	61, 266, 406, 472
MaeI	CTAG	3 cut(s)	63, 77, 383
MaeIII	GTNAC	2 cut(s)	16, 46
MboII	GAAGA	5 cut(s)	46, 122, 135, 353, 389
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	191, 464
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	7 cut(s)	7, 94, 119, 182, 184, 470, 523
MseI	TTAA	3 cut(s)	105, 323, 336
MslI	CAYNNNNRTG	3 cut(s)	149, 363, 477
MspR9I	CCNGG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	256, 309
PleI	GAGTC	2 cut(s)	191, 463
PpsI	GAGTC	2 cut(s)	191, 463
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	131, 404
RsaNI	GTAC	2 cut(s)	130, 403
RseI	CAYNNNNRTG	3 cut(s)	149, 363, 477
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	105, 323, 336
SatI	GCNGC	2 cut(s)	255, 308
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	191, 464
ScrFI	CCNGG	1 cut(s)	477
SetI	ASST	7 cut(s)	18, 105, 117, 193, 481, 504, 515
SfaNI	GCATC	4 cut(s)	61, 266, 406, 472
SmiMI	CAYNNNNRTG	3 cut(s)	149, 363, 477
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	3 cut(s)	86, 206, 307
SspMI	CTAG	3 cut(s)	63, 77, 383
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	2 cut(s)	40, 52
TasI	AATT	1 cut(s)	324
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	105, 323, 336
Tru9I	TTAA	3 cut(s)	105, 323, 336
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	38, 216, 354, 461
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	139
XspI	CTAG	3 cut(s)	63, 77, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.