Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004463

Physical Location & Seq

Genomic Coordinates Forward (+)

9398403 .. 9399876

Gene Structure 1474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGGAGGATAGAGAGAATGCAAAGAGAGTAGTGTTTGTAACTGTAGGAACAACGAGTTTCGATGCTCTTGTGAAAGCAGTGGTTAGTCAAAATGTTAAAGACGAACTGCAGAAGAGAGGATTTACTCATCTTCTTATTCAAATGGGTCGAGGAATCTTTTTCCCAACTAAGTGTGATGGAGCGGATGGATCATTAGTTGTGGATTACTTCACATTTTCCTCAAGTATCGCTGATTATATTCGATCTGCATCTCTTGTTATTAGTCACGCTGGATCTGGAAGTATATTTGAGACACTGAAACTAGGGAAACCATTGATTGTGGTAGTGAACGAAGATCTGATGGACAATCATCAATGTGAATTAGCTGAAGCACTTGAAGAGAGGAAGCACTTGTACTACACTCGTCCTCACTCCCTTCATCAAACCTTGACGAAAATGGAGTTGGGGTCTCTGGTTCAGTATACTCCAGGTGATGGAACTCCTGTTGCTCGCATTATCGACAGGTTCCTTGGATTCCCTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043541 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C

Protein Analysis

176

Amino Acids

19.58

Weight (kDa)

5.49

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tran_28_C	PF04101	11 - 167	2.1e-39	Glycosyltransferase family 28 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16710 AT4G16710 AT4G16710 AT4G16710
fragaria_vesca	FvH4_5g27531 FvH4_6g05471 FvH4_6g10990
malus_domestica	MD04G1208300.v1.1
prunus_persica	Prupe.6G329200_v2.0.a1
pyrus_communis	pycom04g18440
rosa_chinensis	RchiOBHm_Chr3g0454251 RchiOBHm_Chr7g0218901
rosa_laevigata	RLG00000002319 RLG00000002326 RLG00000002353
rosa_multiflora	Rmu_sc0003823.1_g000003
rosa_roxburghii	Rroxscaffold_165G00437030 Rroxscaffold_6G00425330
rosa_rugosa	Rorug02G0653600 Rorug07G0179600
rosa_samantha	Rh3AG057100 Rh3BG058500 Rh3CG057700 Rh3DG059000 Rh5BG142500 Rh7AG322800 Rh7BG313900 Rh7CG339600 Rh7DG320000
rosa_wichuraiana	Rw3G004390 Rw7G027350 Rw7G028480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	476
AccBSI	CCGCTC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	464
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	2 cut(s)	199, 283
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	143, 380
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw26I	GTCTC	2 cut(s)	287, 456
AlwI	GGATC	2 cut(s)	199, 283
AsuHPI	GGTGA	1 cut(s)	485
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BccI	CCATC	4 cut(s)	173, 182, 337, 470
BciT130I	CCWGG	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	287, 456
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	2 cut(s)	45, 110
BglII	AGATCT	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	471
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	55, 260
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	287, 456
BsmI	GAATGC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	456
Bsp143I	GATC	4 cut(s)	191, 245, 275, 337
BspACI	CCGC	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	509
BspMAI	CTGCAG	1 cut(s)	114
BspPI	GGATC	2 cut(s)	199, 283
BspTNI	GGTCTC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	4 cut(s)	191, 245, 275, 337
BssNAI	GTATAC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	511
Bst1107I	GTATAC	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	110, 375
BstC8I	GCNNGC	1 cut(s)	493
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	4 cut(s)	194, 248, 278, 340
BstMAI	GTCTC	2 cut(s)	287, 456
BstMBI	GATC	4 cut(s)	191, 245, 275, 337
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	2 cut(s)	45, 110
BstX2I	RGATCY	2 cut(s)	275, 337
BstYI	RGATCY	2 cut(s)	275, 337
BstZ17I	GTATAC	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 296
Cac8I	GCNNGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	397
CviJI	RGCY	1 cut(s)	368
CviKI_1	RGCY	1 cut(s)	368
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	193, 247, 277, 339
DpnII	GATC	4 cut(s)	191, 245, 275, 337
Eam1104I	CTCTTC	2 cut(s)	110, 375
EarI	CTCTTC	2 cut(s)	110, 375
Eco130I	CCWWGG	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
FaiI	YATR	3 cut(s)	240, 287, 465
FblI	GTMKAC	1 cut(s)	464
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	453
HinfI	GANTC	2 cut(s)	156, 516
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	331, 465
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	2 cut(s)	331, 465
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	23, 112, 251
HpyF3I	CTNAG	1 cut(s)	171
Kzo9I	GATC	4 cut(s)	191, 245, 275, 337
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	258, 264, 440, 456, 483, 490, 498
LweI	GCATC	2 cut(s)	55, 260
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	40, 266
MalI	GATC	4 cut(s)	193, 247, 277, 339
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	4 cut(s)	191, 245, 275, 337
MboII	GAAGA	4 cut(s)	125, 127, 347, 392
MflI	RGATCY	2 cut(s)	275, 337
MluCI	AATT	1 cut(s)	362
MnlI	CCTC	5 cut(s)	113, 146, 232, 378, 420
MseI	TTAA	2 cut(s)	99, 529
MslI	CAYNNNNRTG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	471
NdeII	GATC	4 cut(s)	191, 245, 275, 337
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	266
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	156, 516
PflMI	CCANNNNNTGG	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	114
PsuI	RGATCY	2 cut(s)	275, 337
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	99, 529
Sau3AI	GATC	4 cut(s)	191, 245, 275, 337
ScrFI	CCNGG	1 cut(s)	471
SetI	ASST	4 cut(s)	370, 431, 475, 509
SfaNI	GCATC	2 cut(s)	55, 260
SfcI	CTRYAG	2 cut(s)	45, 110
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	4 cut(s)	63, 151, 244, 501
TasI	AATT	1 cut(s)	362
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	2 cut(s)	156, 516
Tru1I	TTAA	2 cut(s)	99, 529
Tru9I	TTAA	2 cut(s)	99, 529
TscAI	CASTG	2 cut(s)	87, 303
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	410
TspRI	CASTG	2 cut(s)	87, 303
Van91I	CCANNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	464
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.