FvH4_6g05681

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017680
Physical Location & Seq
Forward (+)
3240164 .. 3241297
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05681.t1

Sequence Viewer

Length: 1134 bp
ATGTCAGTTGTGTTTGCCAATAAGAAAGTCAAGAGAGAAATCCCACCACCACCATGGTCTGATCTTCACATTGACATAATAGTTTGCATCATGGGATGCCTTTGTTATGTGGATCAGATTCATTTTCGTGCCGTTTGCAAGAATTGGAGACTAGTTTCTGGTGTGAAGCCTAATGATAAACTCCCTTTGGTTCTGACATTGAATTTAAACTGCAAGCATGATTATTATCCCATTACCCTCTATGATCCATCCAGCAGCATTACATACGAGCTTGGTCATGAACTTGAACCTTCAAGACTACCGGGGTTTGGCAAACTACAAGTCTGTGGTGCAGGAAAGGATGGTTGGTTGCTTGTAGCTGAGCTTTCTCCAAACATTGTCACTGATTCATCCACTATATACCTCTACAATCCTTTCAACGATATGGGGACTATCTATTTACCCCTTTTGACTGGCACTAGGATTAAAGCCACATTTGGTGGTACCTCTGATCTGACTTCCAACGATTGTTTGTTTTTCATGGTGCACGATGTTGGAGAGGACCAAAGGGGGATAAGGATTAGCACTTGCCGCCATGGTGAGAGCAGGTGGACTAGCCATTTTAAAGATGAGCGTTGTAAGGAGATAGTAATTGGTGTGTTCCATGTCAAGGGAATCTTCTACTGTGTCTTCAAAAGTGGAATTCTAGGTTCCTTCAACCCTGATACCAAAGTTTGGAGCCTGCTGGTTACTGCTGAAAACATGGATTTAGTGGAGTTTCGAAATCTAGCAGCTTTTGAAGCTAGTGTTGTTGAGTCTGATGGAGAGGTGTTGCTAGTGTACTCAAAGCGGGACTATAAGCCTTGGCACATCTTCAGGCTAGATTGGTTGCAAATGAAATGGGTGAAGGAAGTTAGCTTGGGCAAAAGAGTGTTATTTCTCGGTGACATCTCGTTTTTGTATTCTGCAGATTGTGAAATAAAGGATCTAGCTGATCGTATCTATTATCAGGGTTTTAGGAAATCTTACTTCTATCCCATCAAGTCCGGTATTGGTAGGCTCCGCAGCAATGCATTGTTACGCAACTCTTGCATACATTATGAGTCACGCAGCGATCATATGCTCAGAGTTTGGATCAAACCACCAACGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

378

Amino Acids

43.19

Weight (kDa)

8.35

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 51 5.7e-06 F-box domain
Beta-prop_KIB1-4 PF03478 94 - 329 2.5e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g05681
prunus_persica Prupe.1G157100_v2.0.a1 Prupe.1G157100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454581
rosa_laevigata RLG00000025432
rosa_multiflora Rmu_ssc0000455.1_g000001
rosa_rugosa Rorug03G0000400
rosa_samantha Rh3AG060100 Rh3BG062200 Rh3CG061000 Rh3DG061800
rosa_wichuraiana Rw3G004670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 576
Acc65I GGTACC 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 482
AccB7I CCANNNNNTGG 1 cut(s) 714
AciI CCGC 3 cut(s) 571, 829, 1042
AclWI GGATC 4 cut(s) 120, 239, 972, 1121
AcsI RAATTY 2 cut(s) 202, 681
AcuI CTGAAG 1 cut(s) 838
AfaI GTAC 2 cut(s) 484, 821
AfiI CCNNNNNNNGG 3 cut(s) 308, 649, 714
AgsI TTSAA 7 cut(s) 202, 287, 294, 418, 673, 697, 779
AhlI ACTAGT 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AluBI AGCT 7 cut(s) 271, 359, 364, 773, 782, 897, 971
AluI AGCT 7 cut(s) 271, 359, 364, 773, 782, 897, 971
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 1 cut(s) 142
Alw44I GTGCAC 1 cut(s) 524
AlwI GGATC 4 cut(s) 120, 239, 972, 1121
ApaLI GTGCAC 1 cut(s) 524
ApeKI GCWGC 4 cut(s) 255, 770, 1044, 1089
ApoI RAATTY 2 cut(s) 202, 681
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
Asp718I GGTACC 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 541
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 3 cut(s) 590, 895, 935
AsuII TTCGAA 1 cut(s) 760
AvaII GGWCC 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 528
BaeI ACNNNNGTAYC 2 cut(s) 696, 729
BanI GGYRCC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 4 cut(s) 267, 782, 1056, 1101
BccI CCATC 4 cut(s) 256, 335, 794, 1025
BceAI ACGGC 1 cut(s) 116
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 142
BcuI ACTAGT 1 cut(s) 151
BfaI CTAG 9 cut(s) 152, 459, 594, 686, 767, 783, 815, 860, 968
BfmI CTRYAG 1 cut(s) 945
BfuAI ACCTGC 1 cut(s) 576
BisI GCNGC 5 cut(s) 256, 571, 771, 1045, 1090
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 5 cut(s) 257, 572, 772, 1046, 1091
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 541
BmiI GGNNCC 4 cut(s) 484, 691, 719, 1040
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 86, 96
BpiI GAAGAC 1 cut(s) 661
Bpu1102I GCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 760
BpuMI CCSGG 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 4 cut(s) 53, 302, 574, 842
BsaWI WCCGGW 1 cut(s) 1025
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 649, 714
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 1054
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 4 cut(s) 53, 302, 574, 842
BseGI GGATG 4 cut(s) 101, 248, 346, 389
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 308, 649, 714
BseMI GCAATG 1 cut(s) 1054
BseMII CTCAG 2 cut(s) 351, 1117
BseNI ACTGG 1 cut(s) 457
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 4 cut(s) 267, 782, 1056, 1101
BsgI GTGCAG 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 2 cut(s) 302, 1026
BslFI GGGAC 2 cut(s) 442, 845
BslI CCNNNNNNNGG 3 cut(s) 308, 649, 714
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 2 cut(s) 442, 845
Bsp119I TTCGAA 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 8 cut(s) 61, 112, 244, 490, 964, 973, 1093, 1113
Bsp1720I GCTNAGC 1 cut(s) 360
Bsp19I CCATGG 2 cut(s) 53, 574
BspACI CCGC 3 cut(s) 571, 829, 1042
BspCNI CTCAG 2 cut(s) 352, 1116
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 484, 691, 719, 1040
BspMAI CTGCAG 1 cut(s) 949
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 4 cut(s) 120, 239, 972, 1121
BspT104I TTCGAA 1 cut(s) 760
BspT107I GGYRCC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 1054
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 4 cut(s) 53, 302, 574, 842
BssMI GATC 8 cut(s) 61, 112, 244, 490, 964, 973, 1093, 1113
BssT1I CCWWGG 3 cut(s) 53, 574, 842
Bst4CI ACNGT 1 cut(s) 665
BstAPI GCANNNNNTGC 1 cut(s) 1068
BstBI TTCGAA 1 cut(s) 760
BstC8I GCNNGC 2 cut(s) 215, 722
BstDEI CTNAG 2 cut(s) 360, 1103
BstDSI CCRYGG 2 cut(s) 53, 574
BstF5I GGATG 4 cut(s) 101, 248, 346, 389
BstKTI GATC 8 cut(s) 64, 115, 247, 493, 967, 976, 1096, 1116
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 8 cut(s) 61, 112, 244, 490, 964, 973, 1093, 1113
BstMWI GCNNNNNNNGC 3 cut(s) 570, 779, 1068
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 945
BstSLI GKGCMC 1 cut(s) 528
BstV1I GCAGC 4 cut(s) 267, 782, 1056, 1101
BstV2I GAAGAC 1 cut(s) 661
BstX2I RGATCY 1 cut(s) 964
BstXI CCANNNNNNTGG 1 cut(s) 54
BstYI RGATCY 1 cut(s) 964
BtgI CCRYGG 2 cut(s) 53, 574
BtsCI GGATG 4 cut(s) 101, 248, 346, 389
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 2 cut(s) 215, 722
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 541
Csp6I GTAC 2 cut(s) 483, 820
CviAII CATG 8 cut(s) 54, 91, 218, 278, 520, 575, 644, 742
CviQI GTAC 2 cut(s) 483, 820
DdeI CTNAG 2 cut(s) 360, 1103
DpnI GATC 8 cut(s) 63, 114, 246, 492, 966, 975, 1095, 1115
DpnII GATC 8 cut(s) 61, 112, 244, 490, 964, 973, 1093, 1113
DraI TTTAAA 2 cut(s) 207, 604
Eco130I CCWWGG 3 cut(s) 53, 574, 842
Eco47I GGWCC 1 cut(s) 541
Eco57I CTGAAG 1 cut(s) 838
EcoRI GAATTC 1 cut(s) 681
EcoT14I CCWWGG 3 cut(s) 53, 574, 842
EcoT22I ATGCAT 1 cut(s) 1054
ErhI CCWWGG 3 cut(s) 53, 574, 842
FaeI CATG 8 cut(s) 57, 94, 221, 281, 523, 578, 647, 745
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 2 cut(s) 442, 845
FatI CATG 8 cut(s) 53, 90, 217, 277, 519, 574, 643, 741
FauI CCCGC 1 cut(s) 822
FauNDI CATATG 1 cut(s) 1098
Fnu4HI GCNGC 5 cut(s) 256, 571, 771, 1045, 1090
FokI GGATG 4 cut(s) 108, 235, 353, 376
Fsp4HI GCNGC 5 cut(s) 256, 571, 771, 1045, 1090
FspBI CTAG 9 cut(s) 152, 459, 594, 686, 767, 783, 815, 860, 968
GluI GCNGC 5 cut(s) 256, 571, 771, 1045, 1090
HapII CCGG 2 cut(s) 302, 1026
Hin1II CATG 8 cut(s) 57, 94, 221, 281, 523, 578, 647, 745
HinfI GANTC 5 cut(s) 118, 386, 654, 794, 1082
HpaII CCGG 2 cut(s) 302, 1026
HphI GGTGA 3 cut(s) 590, 895, 935
Hpy166II GTNNAC 3 cut(s) 526, 591, 820
Hpy188I TCNGA 7 cut(s) 61, 117, 195, 490, 495, 799, 1106
Hpy188III TCNNGA 3 cut(s) 31, 278, 294
Hpy8I GTNNAC 3 cut(s) 526, 591, 820
HpyAV CCTTC 3 cut(s) 300, 703, 880
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4V TGCA 9 cut(s) 87, 138, 213, 332, 526, 871, 947, 1052, 1071
HpyF10VI GCNNNNNNNGC 3 cut(s) 570, 779, 1068
HpyF3I CTNAG 2 cut(s) 360, 1103
Hsp92II CATG 8 cut(s) 57, 94, 221, 281, 523, 578, 647, 745
KpnI GGTACC 1 cut(s) 486
Kzo9I GATC 8 cut(s) 61, 112, 244, 490, 964, 973, 1093, 1113
LmnI GCTCC 2 cut(s) 717, 1044
Lsp1109I GCAGC 4 cut(s) 267, 782, 1056, 1101
LweI GCATC 2 cut(s) 86, 96
MaeI CTAG 9 cut(s) 152, 459, 594, 686, 767, 783, 815, 860, 968
MaeIII GTNAC 5 cut(s) 379, 727, 923, 1056, 1083
MalI GATC 8 cut(s) 63, 114, 246, 492, 966, 975, 1095, 1115
MboI GATC 8 cut(s) 61, 112, 244, 490, 964, 973, 1093, 1113
MboII GAAGA 4 cut(s) 56, 649, 661, 844
MflI RGATCY 1 cut(s) 964
MhlI GDGCHC 1 cut(s) 528
MluCI AATT 4 cut(s) 142, 202, 630, 681
MlyI GAGTC 2 cut(s) 803, 1091
MmeI TCCRAC 2 cut(s) 514, 525
MnlI CCTC 5 cut(s) 248, 413, 496, 532, 799
Mph1103I ATGCAT 1 cut(s) 1054
MseI TTAA 3 cut(s) 206, 465, 603
MslI CAYNNNNRTG 2 cut(s) 52, 126
MspI CCGG 2 cut(s) 302, 1026
MspR9I CCNGG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 570, 779, 1068
NciI CCSGG 1 cut(s) 303
NcoI CCATGG 2 cut(s) 53, 574
NdeI CATATG 1 cut(s) 1098
NdeII GATC 8 cut(s) 61, 112, 244, 490, 964, 973, 1093, 1113
NlaIII CATG 8 cut(s) 57, 94, 221, 281, 523, 578, 647, 745
NlaIV GGNNCC 4 cut(s) 484, 691, 719, 1040
NmuCI GTSAC 3 cut(s) 379, 923, 1083
NsiI ATGCAT 1 cut(s) 1054
NspV TTCGAA 1 cut(s) 760
PagI TCATGA 1 cut(s) 277
PaqCI CACCTGC 1 cut(s) 576
PfeI GAWTC 3 cut(s) 118, 386, 654
PflMI CCANNNNNTGG 1 cut(s) 714
PkrI GCNGC 5 cut(s) 257, 572, 772, 1046, 1091
PleI GAGTC 2 cut(s) 802, 1090
PpsI GAGTC 2 cut(s) 802, 1090
PspN4I GGNNCC 4 cut(s) 484, 691, 719, 1040
PspPI GGNCC 1 cut(s) 541
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 1 cut(s) 964
RsaI GTAC 2 cut(s) 484, 821
RsaNI GTAC 2 cut(s) 483, 820
RseI CAYNNNNRTG 2 cut(s) 52, 126
SaqAI TTAA 3 cut(s) 206, 465, 603
SatI GCNGC 5 cut(s) 256, 571, 771, 1045, 1090
Sau3AI GATC 8 cut(s) 61, 112, 244, 490, 964, 973, 1093, 1113
Sau96I GGNCC 1 cut(s) 541
SchI GAGTC 2 cut(s) 803, 1091
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 2 cut(s) 86, 96
SfcI CTRYAG 1 cut(s) 945
SfuI TTCGAA 1 cut(s) 760
SinI GGWCC 1 cut(s) 541
SmiMI CAYNNNNRTG 2 cut(s) 52, 126
SpeI ACTAGT 1 cut(s) 151
Sse9I AATT 4 cut(s) 142, 202, 630, 681
SsiI CCGC 3 cut(s) 571, 829, 1042
SspMI CTAG 9 cut(s) 152, 459, 594, 686, 767, 783, 815, 860, 968
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 3 cut(s) 53, 574, 842
TaaI ACNGT 1 cut(s) 665
TaqI TCGA 1 cut(s) 760
TasI AATT 4 cut(s) 142, 202, 630, 681
TatI WGTACW 1 cut(s) 819
TauI GCSGC 1 cut(s) 573
TfiI GAWTC 3 cut(s) 118, 386, 654
Tru1I TTAA 3 cut(s) 206, 465, 603
Tru9I TTAA 3 cut(s) 206, 465, 603
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 3 cut(s) 379, 923, 1083
TseI GCWGC 4 cut(s) 255, 770, 1044, 1089
Tsp45I GTSAC 3 cut(s) 379, 923, 1083
TspDTI ATGAA 5 cut(s) 110, 294, 378, 508, 890
TspRI CASTG 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 714
VneI GTGCAC 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 541
XapI RAATTY 2 cut(s) 202, 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
XspI CTAG 9 cut(s) 152, 459, 594, 686, 767, 783, 815, 860, 968
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.