Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017680

Physical Location & Seq

Genomic Coordinates Forward (+)

12461669 .. 12463692

Gene Structure 2024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G157100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCAGTCGTTACTGATAAAAGGCTCAGGAGAGGAAGCCCGCCATGGTCTGATCTTCCATATGACATATTGTGTTGCATAATGGGGCACCTTTGTTTTGTGGACCAAATTCAATTTCGTGCTGTTTGCAAGAATTTTGGACTGGTTGCTGGTATTAGGCCTAAAGATAAACTGCCCTGGGTTCTAACATTAAACTTCAGTTTTAAAAATGATATGTACCCATCTAGCCTCTATGATCCATGTACCCTTGAAGCATATAAGCTTGATCATGAATTAACATCTTCTAGCTGGACTGGGGTTGTCAAACTACAAGTTTGCGGTGCAAGAAACGGTTGGTTGCTTCTAGCTGAAATTACACCTTTTTTTTTCTTTGGTCACACTGATTTTTACCTCTACAATCCTTTCACTGATGATGCGAGTATCAATTTGCCCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

146

Amino Acids

16.54

Weight (kDa)

6.25

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017680)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05681
prunus_persica	Prupe.1G157100_v2.0.a1 Prupe.1G157100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454581
rosa_laevigata	RLG00000025432
rosa_multiflora	Rmu_ssc0000455.1_g000001
rosa_rugosa	Rorug03G0000400
rosa_samantha	Rh3AG060100 Rh3BG062200 Rh3CG061000 Rh3DG061800
rosa_wichuraiana	Rw3G004670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AciI	CCGC	2 cut(s)	41, 318
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	108, 133
AcuI	CTGAAG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	218, 244
AgsI	TTSAA	2 cut(s)	113, 251
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	3 cut(s)	262, 288, 347
AluI	AGCT	3 cut(s)	262, 288, 347
AlwI	GGATC	1 cut(s)	230
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	108, 133
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	87
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	178
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	432
BfaI	CTAG	3 cut(s)	225, 285, 344
Bme1390I	CCNGG	2 cut(s)	178, 432
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	2 cut(s)	178, 432
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	44, 176, 177
Bse1I	ACTGG	2 cut(s)	147, 298
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	3 cut(s)	44, 176, 177
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	147, 298
BseSI	GKGCMC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	432
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	52, 235, 265
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	2 cut(s)	41, 318
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	147, 298
BssECI	CCNNGG	3 cut(s)	44, 176, 177
BssMI	GATC	3 cut(s)	52, 235, 265
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	44
BstKTI	GATC	3 cut(s)	55, 238, 268
BstMBI	GATC	3 cut(s)	52, 235, 265
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	176, 430
BstSLI	GKGCMC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	378, 405
Cac8I	GCNNGC	1 cut(s)	41
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	217, 243
CviAII	CATG	3 cut(s)	45, 240, 269
CviJI	RGCY	7 cut(s)	25, 39, 160, 228, 262, 288, 347
CviKI_1	RGCY	7 cut(s)	25, 39, 160, 228, 262, 288, 347
CviQI	GTAC	2 cut(s)	217, 243
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	54, 237, 267
DpnII	GATC	3 cut(s)	52, 235, 265
DraI	TTTAAA	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	3 cut(s)	48, 243, 272
FatI	CATG	3 cut(s)	44, 239, 268
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	265
FspBI	CTAG	3 cut(s)	225, 285, 344
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	432
Hin1II	CATG	3 cut(s)	48, 243, 272
HindIII	AAGCTT	1 cut(s)	260
HpaII	CCGG	1 cut(s)	432
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	28, 269
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	78, 129, 323
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	48, 243, 272
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	52, 235, 265
LpnPI	CCDG	7 cut(s)	13, 128, 135, 163, 190, 274, 279
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	3 cut(s)	225, 285, 344
MaeIII	GTNAC	2 cut(s)	10, 374
MalI	GATC	3 cut(s)	54, 237, 267
MboI	GATC	3 cut(s)	52, 235, 265
MboII	GAAGA	2 cut(s)	47, 273
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	6 cut(s)	108, 113, 133, 272, 351, 424
MnlI	CCTC	3 cut(s)	26, 239, 401
MseI	TTAA	4 cut(s)	191, 204, 275, 436
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	2 cut(s)	178, 432
MvaI	CCWGG	1 cut(s)	178
NciI	CCSGG	1 cut(s)	432
NcoI	CCATGG	1 cut(s)	44
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	3 cut(s)	52, 235, 265
NlaIII	CATG	3 cut(s)	48, 243, 272
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	374
PagI	TCATGA	1 cut(s)	268
PasI	CCCWGGG	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	103
RsaI	GTAC	2 cut(s)	218, 244
RsaNI	GTAC	2 cut(s)	217, 243
SaqAI	TTAA	4 cut(s)	191, 204, 275, 436
Sau3AI	GATC	3 cut(s)	52, 235, 265
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	178, 432
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	93, 264, 290, 349, 361, 393
SfaNI	GCATC	1 cut(s)	403
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	6 cut(s)	108, 113, 133, 272, 351, 424
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	41, 318
SspMI	CTAG	3 cut(s)	225, 285, 344
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	176, 430
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	332
TasI	AATT	6 cut(s)	108, 113, 133, 272, 351, 424
Tru1I	TTAA	4 cut(s)	191, 204, 275, 436
Tru9I	TTAA	4 cut(s)	191, 204, 275, 436
TscAI	CASTG	2 cut(s)	385, 412
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	385, 412
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	2 cut(s)	108, 133
XspI	CTAG	3 cut(s)	225, 285, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.