Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009695

Physical Location & Seq

Genomic Coordinates Reverse (-)

4375032 .. 4376181

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCAATTAGCGCTGAACAAGAAGCACTTGAAACGCAGAGGGATGCGTTGGAAGTGCACAGGTATGCGGCCTGGGGCCTCATACCGGAAAATGCGTACACAAGGATCAAGAAGTTGATGGAGGCTCTCCGGGAGGAGTTTGGTGGCCCGGAGATCGAGCCTCACATCTCCATAGTCGGATCCACCCTAATGACAGAAGATGAAGCCATCGGGGCATTTAATGGAGGTTGTAATGAGGTTGAACAAATCAGATGCAAAGTCGAAACCTTGGAGACTAGTAGATTCTATTTCCAGTGTGTTTCTCTCGTCATTGAAATAACTGACGATCTGAAAGAGAAAACTCGTTGGTTTGCCGGATGTATGAATCGACCTTTCCCTTGTATGCCACATTTGAGCCTCCTATATGGGACTTTGACAGATGAAGAGAAAAAAAGAGCAAAAGAGAAAGTTCTTGCTATGGATCCGACCATTACTGAACTAGAATTCATCATGAGTCGGGTGGCATTGTACCAAGTTAACTTTGCAGATAGAACTCAAAAGTCCTGGGTGAAGCTTCGTGAGGGAAACCTCAAACTCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

194

Amino Acids

22.13

Weight (kDa)

5.16

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07310 FvH4_6g07320
rosa_chinensis	RchiOBHm_Chr3g0456921 RchiOBHm_Chr3g0456931
rosa_laevigata	RLG00000025263 RLG00000025264
rosa_multiflora	Rmu_co8272005.1_g000001 Rmu_sc0000133.1_g000001 Rmu_sc0000133.1_g000002 Rmu_sc0016008.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422360
rosa_rugosa	Rorug03G0017100 Rorug03G0017200 Rorug03G0017300 Rorug03G0017400
rosa_samantha	Rh3AG077200 Rh3AG077400 Rh3BG079200 Rh3BG079300 Rh3CG079100 Rh3CG079200 Rh3DG080900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	5 cut(s)	113, 174, 187, 455, 468
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	2 cut(s)	98, 509
AfeI	AGCGCT	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	32, 242, 314
AhlI	ACTAGT	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	71, 542
AluBI	AGCT	2 cut(s)	553, 579
AluI	AGCT	2 cut(s)	553, 579
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	266
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	5 cut(s)	113, 174, 187, 455, 468
Aor51HI	AGCGCT	1 cut(s)	13
AoxI	GGCC	3 cut(s)	69, 76, 145
ApaLI	GTGCAC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	76, 146
AsuC2I	CCSGG	2 cut(s)	131, 149
AsuHPI	GGTGA	1 cut(s)	559
BaeGI	GKGCMC	1 cut(s)	60
BamHI	GGATCC	2 cut(s)	179, 460
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	2 cut(s)	112, 215
BciT130I	CCWGG	2 cut(s)	73, 544
BcnI	CCSGG	2 cut(s)	131, 149
BcoDI	GTCTC	1 cut(s)	266
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	2 cut(s)	276, 479
BfoI	RGCGCY	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	4 cut(s)	73, 131, 149, 544
BmgT120I	GGNCC	2 cut(s)	76, 146
BmiI	GGNNCC	3 cut(s)	77, 181, 462
BmrFI	CCNGG	4 cut(s)	73, 131, 149, 544
BmsI	GCATC	2 cut(s)	34, 242
BpuMI	CCSGG	2 cut(s)	131, 149
BsaJI	CCNNGG	3 cut(s)	72, 267, 543
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	73, 544
BseDI	CCNNGG	3 cut(s)	72, 267, 543
BseGI	GGATG	2 cut(s)	49, 362
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	60
BshFI	GGCC	3 cut(s)	71, 78, 147
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	4 cut(s)	86, 130, 149, 354
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	71, 78, 147
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	105, 153, 179, 325, 460
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	3 cut(s)	71, 78, 147
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	3 cut(s)	77, 181, 462
BspPI	GGATC	5 cut(s)	113, 174, 187, 455, 468
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	72, 267, 543
BssMI	GATC	5 cut(s)	105, 153, 179, 325, 460
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	73, 544
Bst6I	CTCTTC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	575
BstF5I	GGATG	2 cut(s)	49, 362
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	5 cut(s)	108, 156, 182, 328, 463
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	5 cut(s)	105, 153, 179, 325, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	2 cut(s)	73, 544
BstSCI	CCNGG	4 cut(s)	71, 129, 147, 542
BstSLI	GKGCMC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	179, 460
BstYI	RGATCY	2 cut(s)	179, 460
BsuRI	GGCC	3 cut(s)	71, 78, 147
BtsCI	GGATG	2 cut(s)	49, 362
BtsIMutI	CAGTG	1 cut(s)	299
CciI	TCATGA	1 cut(s)	489
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	76, 146
Csp6I	GTAC	2 cut(s)	97, 508
CviAII	CATG	1 cut(s)	490
CviJI	RGCY	9 cut(s)	71, 78, 125, 147, 160, 206, 396, 553, 579
CviKI_1	RGCY	9 cut(s)	71, 78, 125, 147, 160, 206, 396, 553, 579
CviQI	GTAC	2 cut(s)	97, 508
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	5 cut(s)	107, 155, 181, 327, 462
DpnII	GATC	5 cut(s)	105, 153, 179, 325, 460
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	71, 542
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	493
FaiI	YATR	9 cut(s)	66, 83, 173, 362, 383, 403, 405, 458, 491
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	2 cut(s)	56, 369
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	276, 479
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	71, 78, 147
HapII	CCGG	4 cut(s)	86, 130, 149, 354
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	3 cut(s)	282, 364, 493
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	4 cut(s)	86, 130, 149, 354
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	3 cut(s)	58, 99, 517
Hpy188I	TCNGA	4 cut(s)	179, 251, 330, 465
Hpy188III	TCNNGA	3 cut(s)	109, 490, 557
Hpy8I	GTNNAC	3 cut(s)	58, 99, 517
HpyCH4V	TGCA	3 cut(s)	58, 255, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	575
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	1 cut(s)	12
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	105, 153, 179, 325, 460
LweI	GCATC	2 cut(s)	34, 242
MaeI	CTAG	2 cut(s)	276, 479
MalI	GATC	5 cut(s)	107, 155, 181, 327, 462
MboI	GATC	5 cut(s)	105, 153, 179, 325, 460
MboII	GAAGA	2 cut(s)	209, 434
MflI	RGATCY	2 cut(s)	179, 460
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	6, 482
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	3 cut(s)	30, 157, 488
MseI	TTAA	2 cut(s)	219, 516
MslI	CAYNNNNRTG	2 cut(s)	63, 188
MspI	CCGG	4 cut(s)	86, 130, 149, 354
MspR9I	CCNGG	4 cut(s)	73, 131, 149, 544
MvaI	CCWGG	2 cut(s)	73, 544
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	2 cut(s)	131, 149
NdeII	GATC	5 cut(s)	105, 153, 179, 325, 460
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	3 cut(s)	77, 181, 462
PagI	TCATGA	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	282, 364
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	71, 542
PspGI	CCWGG	2 cut(s)	71, 542
PspN4I	GGNNCC	3 cut(s)	77, 181, 462
PspPI	GGNCC	2 cut(s)	76, 146
PsuI	RGATCY	2 cut(s)	179, 460
RsaI	GTAC	2 cut(s)	98, 509
RsaNI	GTAC	2 cut(s)	97, 508
RseI	CAYNNNNRTG	2 cut(s)	63, 188
SaqAI	TTAA	2 cut(s)	219, 516
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	5 cut(s)	105, 153, 179, 325, 460
Sau96I	GGNCC	2 cut(s)	76, 146
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	4 cut(s)	73, 131, 149, 544
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	8 cut(s)	65, 229, 240, 269, 373, 555, 570, 581
SfaNI	GCATC	2 cut(s)	34, 242
SmiMI	CAYNNNNRTG	2 cut(s)	63, 188
SpeI	ACTAGT	1 cut(s)	275
Sse9I	AATT	2 cut(s)	6, 482
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	276, 479
StyD4I	CCNGG	4 cut(s)	71, 129, 147, 542
StyI	CCWWGG	1 cut(s)	267
TaqI	TCGA	3 cut(s)	156, 261, 367
TasI	AATT	2 cut(s)	6, 482
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	282, 364
Tru1I	TTAA	2 cut(s)	219, 516
Tru9I	TTAA	2 cut(s)	219, 516
TscAI	CASTG	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	216, 377, 435, 475
TspRI	CASTG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	482
XspI	CTAG	2 cut(s)	276, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.