Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000133.1

Orthogroup ID

OG0009695

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1898

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000133.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

gtactgccggagcgagggaggcaacgcggggcaggggcgtgggctgctggtgcggtggcggcagcaagtagaaagcttgcgtctgggcgcgggggcgccgtgcagaagggcagcgactcaggatggcgtgtgtgcagcgtgggctgctggtgtggtggcggtagcaagcagaaagcttgcggtctgatgccatcccaagaacaagaagcattggaagcgttcaaggatgcgcaagaaatgcacatgtatgcagtgtgggctcttccaccaacacatgtgctcccacgaatcaagacggtgatggagggcctacgagccgaattcggtggtcctgaaatcgaacctcacatcaccgttttgggatccatgttaaggacggaagaagatgcgatccaacaattcaaagatgcttgtaacattatcacccgttttgaatgtaacgtcgatcacattgaaactagtcggtttttttaccagtgtgtctcccttatcattgatccaatcgaagatgtagagccatacatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

175

Amino Acids

19.1

Weight (kDa)

5.6

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07310 FvH4_6g07320
rosa_chinensis	RchiOBHm_Chr3g0456921 RchiOBHm_Chr3g0456931
rosa_laevigata	RLG00000025263 RLG00000025264
rosa_multiflora	Rmu_co8272005.1_g000001 Rmu_sc0000133.1_g000001 Rmu_sc0000133.1_g000002 Rmu_sc0016008.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422360
rosa_rugosa	Rorug03G0017100 Rorug03G0017200 Rorug03G0017300 Rorug03G0017400
rosa_samantha	Rh3AG077200 Rh3AG077400 Rh3BG079200 Rh3BG079300 Rh3CG079100 Rh3CG079200 Rh3DG080900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	95
AccII	CGCG	2 cut(s)	27, 90
AciI	CCGC	6 cut(s)	27, 53, 59, 90, 159, 180
AclWI	GGATC	4 cut(s)	357, 370, 385, 491
AcsI	RAATTY	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	3
AfiI	CCNNNNNNNGG	2 cut(s)	14, 372
AflIII	ACRYGT	2 cut(s)	243, 274
AgsI	TTSAA	4 cut(s)	223, 403, 434, 455
AhlI	ACTAGT	1 cut(s)	458
AluBI	AGCT	2 cut(s)	76, 176
AluI	AGCT	2 cut(s)	76, 176
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	4 cut(s)	357, 370, 385, 491
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	5 cut(s)	44, 62, 111, 135, 144
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	3 cut(s)	90, 98, 232
AspS9I	GGNCC	2 cut(s)	307, 329
AsuHPI	GGTGA	3 cut(s)	310, 343, 415
AvaII	GGWCC	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	5 cut(s)	31, 74, 123, 131, 147
BccI	CCATC	3 cut(s)	117, 199, 295
BceAI	ACGGC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	487
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	6 cut(s)	45, 60, 63, 112, 136, 145
BlsI	GCNGC	6 cut(s)	46, 61, 64, 113, 137, 146
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	307, 329
BmiI	GGNNCC	2 cut(s)	97, 364
BmsI	GCATC	4 cut(s)	177, 217, 376, 397
BsaHI	GRCGYC	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 372
Bse1I	ACTGG	1 cut(s)	475
BseGI	GGATG	3 cut(s)	128, 191, 232
BseLI	CCNNNNNNNGG	2 cut(s)	14, 372
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	475
BseXI	GCAGC	5 cut(s)	31, 74, 123, 131, 147
BsgI	GTGCAG	2 cut(s)	122, 154
Bsh1236I	CGCG	2 cut(s)	27, 90
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	14, 372
BsmAI	GTCTC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	262, 282
Bsp143I	GATC	4 cut(s)	362, 390, 445, 496
BspACI	CCGC	6 cut(s)	27, 53, 59, 90, 159, 180
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	131
BspFNI	CGCG	2 cut(s)	27, 90
BspLI	GGNNCC	2 cut(s)	97, 364
BspPI	GGATC	4 cut(s)	357, 370, 385, 491
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	475
BssMI	GATC	4 cut(s)	362, 390, 445, 496
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	298, 355
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	78, 167, 178
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	3 cut(s)	128, 191, 232
BstFNI	CGCG	2 cut(s)	27, 90
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	3 cut(s)	90, 98, 232
BstKTI	GATC	4 cut(s)	365, 393, 448, 499
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	4 cut(s)	362, 390, 445, 496
BstMWI	GCNNNNNNNGC	9 cut(s)	19, 44, 50, 59, 141, 144, 215, 238, 257
BstNSI	RCATGY	2 cut(s)	247, 278
BstUI	CGCG	2 cut(s)	27, 90
BstV1I	GCAGC	5 cut(s)	31, 74, 123, 131, 147
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	128, 191, 232
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	258, 482
Cac8I	GCNNGC	3 cut(s)	78, 167, 178
CfoI	GCGC	3 cut(s)	90, 98, 232
Cfr13I	GGNCC	2 cut(s)	307, 329
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	2
CviAII	CATG	3 cut(s)	244, 275, 367
CviJI	RGCY	8 cut(s)	44, 76, 144, 176, 260, 309, 317, 517
CviKI_1	RGCY	8 cut(s)	44, 76, 144, 176, 260, 309, 317, 517
CviQI	GTAC	1 cut(s)	2
DdeI	CTNAG	1 cut(s)	118
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	4 cut(s)	364, 392, 447, 498
DpnII	GATC	4 cut(s)	362, 390, 445, 496
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	262
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
FaeI	CATG	3 cut(s)	247, 278, 370
FaiI	YATR	5 cut(s)	245, 249, 276, 368, 520
FatI	CATG	3 cut(s)	243, 274, 366
FauI	CCCGC	2 cut(s)	20, 83
Fnu4HI	GCNGC	6 cut(s)	45, 60, 63, 112, 136, 145
FokI	GGATG	3 cut(s)	135, 178, 239
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	6 cut(s)	45, 60, 63, 112, 136, 145
FspBI	CTAG	1 cut(s)	459
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	3 cut(s)	89, 97, 231
GluI	GCNGC	6 cut(s)	45, 60, 63, 112, 136, 145
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	3 cut(s)	90, 98, 232
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	247, 278, 370
Hin6I	GCGC	3 cut(s)	88, 96, 230
HinP1I	GCGC	3 cut(s)	88, 96, 230
HindIII	AAGCTT	2 cut(s)	74, 174
HinfI	GANTC	2 cut(s)	116, 288
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	310, 343, 415
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	3 cut(s)	120, 292, 332
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	298, 355
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	4 cut(s)	103, 135, 241, 251
HpyF10VI	GCNNNNNNNGC	9 cut(s)	19, 44, 50, 59, 141, 144, 215, 238, 257
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	247, 278, 370
HspAI	GCGC	3 cut(s)	88, 96, 230
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	4 cut(s)	362, 390, 445, 496
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	10, 285
LpnPI	CCDG	8 cut(s)	18, 21, 33, 69, 105, 133, 345, 488
Lsp1109I	GCAGC	5 cut(s)	31, 74, 123, 131, 147
LweI	GCATC	4 cut(s)	177, 217, 376, 397
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	413, 437
MalI	GATC	4 cut(s)	364, 392, 447, 498
MboI	GATC	4 cut(s)	362, 390, 445, 496
MboII	GAAGA	4 cut(s)	254, 392, 395, 518
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	262, 282
MluCI	AATT	2 cut(s)	320, 398
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	8, 12, 298, 354
MseI	TTAA	2 cut(s)	371, 526
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	8
MvnI	CGCG	2 cut(s)	27, 90
MwoI	GCNNNNNNNGC	9 cut(s)	19, 44, 50, 59, 141, 144, 215, 238, 257
NarI	GGCGCC	1 cut(s)	96
NdeII	GATC	4 cut(s)	362, 390, 445, 496
NlaIII	CATG	3 cut(s)	247, 278, 370
NlaIV	GGNNCC	2 cut(s)	97, 364
NsbI	TGCGCA	1 cut(s)	231
NspI	RCATGY	2 cut(s)	247, 278
PciI	ACATGT	2 cut(s)	243, 274
PciSI	GCTCTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	6 cut(s)	46, 61, 64, 113, 137, 146
PleI	GAGTC	1 cut(s)	110
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	110
PscI	ACATGT	2 cut(s)	243, 274
PspN4I	GGNNCC	2 cut(s)	97, 364
PspPI	GGNCC	2 cut(s)	307, 329
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	3
RsaNI	GTAC	1 cut(s)	2
RseI	CAYNNNNRTG	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	371, 526
SatI	GCNGC	6 cut(s)	45, 60, 63, 112, 136, 145
Sau3AI	GATC	4 cut(s)	362, 390, 445, 496
Sau96I	GGNCC	2 cut(s)	307, 329
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	262, 282
SetI	ASST	4 cut(s)	78, 178, 346, 444
SfaNI	GCATC	4 cut(s)	177, 217, 376, 397
SfoI	GGCGCC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	246
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	2 cut(s)	320, 398
SsiI	CCGC	6 cut(s)	27, 53, 59, 90, 159, 180
SspDI	GGCGCC	1 cut(s)	95
SspMI	CTAG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	298, 355
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	3 cut(s)	339, 444, 504
TasI	AATT	2 cut(s)	320, 398
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	371, 526
Tru9I	TTAA	2 cut(s)	371, 526
TscAI	CASTG	2 cut(s)	258, 482
TseI	GCWGC	5 cut(s)	44, 62, 111, 135, 144
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	2 cut(s)	258, 482
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	2 cut(s)	247, 278
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.