Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009695

Physical Location & Seq

Genomic Coordinates Forward (+)

43449107 .. 43449448

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCCATCCCAAGAACAAGAAGCATTGGAAGCGATCAAGGATGCGCAAGAAATGCACATGTATGCAGTGTGGGCTCTTCCACCCACACATGTGCTCCCACGAATCAAGACGGTGATGGAGGGCCTACAAGCCGAATTCAGTGGTCCTGAAATCGAACCTCACATCACCGTCTTGGGATCCATGTTAAGGACGGAAGAAGATGCGATCCAACAATTCAAAGATGCTTGTAACATTATCACCCGTTTTGAATGTAACGTCTATCACATTGAAACTAGTCAGTTTTTTTACCAGTGTGTCTCCCTCATCATTGATCCAATCGAAGATGTAGAGCCCTACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

114

Amino Acids

13.0

Weight (kDa)

4.4

Isoelectric Point (pI)

87.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07310 FvH4_6g07320
rosa_chinensis	RchiOBHm_Chr3g0456921 RchiOBHm_Chr3g0456931
rosa_laevigata	RLG00000025263 RLG00000025264
rosa_multiflora	Rmu_co8272005.1_g000001 Rmu_sc0000133.1_g000001 Rmu_sc0000133.1_g000002 Rmu_sc0016008.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422360
rosa_rugosa	Rorug03G0017100 Rorug03G0017200 Rorug03G0017300 Rorug03G0017400
rosa_samantha	Rh3AG077200 Rh3AG077400 Rh3BG079200 Rh3BG079300 Rh3CG079100 Rh3CG079200 Rh3DG080900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	45
AclWI	GGATC	4 cut(s)	171, 184, 199, 305
AcsI	RAATTY	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	2 cut(s)	57, 88
AgsI	TTSAA	3 cut(s)	217, 248, 269
AhlI	ACTAGT	1 cut(s)	272
AleI	CACNNNNGTG	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	4 cut(s)	171, 184, 199, 305
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	121, 143
AsuHPI	GGTGA	3 cut(s)	124, 157, 229
AvaII	GGWCC	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	176
BanII	GRGCYC	2 cut(s)	76, 333
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	2 cut(s)	13, 109
BcoDI	GTCTC	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	121, 143
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	3 cut(s)	31, 190, 211
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	5, 46
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	3 cut(s)	76, 96, 333
Bsp143I	GATC	4 cut(s)	33, 176, 204, 310
BspANI	GGCC	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	4 cut(s)	171, 184, 199, 305
BspQI	GCTCTTC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	4 cut(s)	33, 176, 204, 310
Bst4CI	ACNGT	2 cut(s)	112, 169
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	5, 46
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	36, 179, 207, 313
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	4 cut(s)	33, 176, 204, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 52, 71
BstNSI	RCATGY	2 cut(s)	61, 92
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	5, 46
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	3 cut(s)	72, 145, 296
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	121, 143
CviAII	CATG	3 cut(s)	58, 89, 181
CviJI	RGCY	4 cut(s)	74, 123, 131, 331
CviKI_1	RGCY	4 cut(s)	74, 123, 131, 331
DpnI	GATC	4 cut(s)	35, 178, 206, 312
DpnII	GATC	4 cut(s)	33, 176, 204, 310
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco24I	GRGCYC	2 cut(s)	76, 333
Eco47I	GGWCC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	134
EcoT38I	GRGCYC	2 cut(s)	76, 333
FaeI	CATG	3 cut(s)	61, 92, 184
FaiI	YATR	4 cut(s)	59, 63, 90, 182
FatI	CATG	3 cut(s)	57, 88, 180
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	2 cut(s)	76, 333
FspBI	CTAG	1 cut(s)	273
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	61, 92, 184
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	102
HphI	GGTGA	3 cut(s)	124, 157, 229
Hpy188III	TCNNGA	2 cut(s)	106, 146
HpyCH4III	ACNGT	2 cut(s)	112, 169
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	55, 65
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 52, 71
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	61, 92, 184
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	4 cut(s)	33, 176, 204, 310
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	2 cut(s)	159, 302
LweI	GCATC	3 cut(s)	31, 190, 211
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	227, 251
MalI	GATC	4 cut(s)	35, 178, 206, 312
MboI	GATC	4 cut(s)	33, 176, 204, 310
MboII	GAAGA	4 cut(s)	68, 206, 209, 332
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	3 cut(s)	76, 96, 333
MluCI	AATT	2 cut(s)	134, 212
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	112, 168, 311
MseI	TTAA	2 cut(s)	185, 340
MslI	CAYNNNNRTG	2 cut(s)	60, 89
MwoI	GCNNNNNNNGC	3 cut(s)	29, 52, 71
NdeII	GATC	4 cut(s)	33, 176, 204, 310
NlaIII	CATG	3 cut(s)	61, 92, 184
NlaIV	GGNNCC	1 cut(s)	178
NsbI	TGCGCA	1 cut(s)	45
NspI	RCATGY	2 cut(s)	61, 92
OliI	CACNNNNGTG	1 cut(s)	89
PciI	ACATGT	2 cut(s)	57, 88
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	102
PscI	ACATGT	2 cut(s)	57, 88
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	121, 143
PsuI	RGATCY	1 cut(s)	176
RseI	CAYNNNNRTG	2 cut(s)	60, 89
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	185, 340
Sau3AI	GATC	4 cut(s)	33, 176, 204, 310
Sau96I	GGNCC	2 cut(s)	121, 143
SduI	GDGCHC	3 cut(s)	76, 96, 333
SetI	ASST	2 cut(s)	160, 258
SfaNI	GCATC	3 cut(s)	31, 190, 211
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	60, 89
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	2 cut(s)	134, 212
SspMI	CTAG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	112, 169
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	153, 318
TasI	AATT	2 cut(s)	134, 212
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	2 cut(s)	185, 340
Tru9I	TTAA	2 cut(s)	185, 340
TscAI	CASTG	3 cut(s)	72, 145, 296
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	3 cut(s)	72, 145, 296
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	2 cut(s)	61, 92
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.