Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009695

Physical Location & Seq

Genomic Coordinates Forward (+)

43451706 .. 43452041

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCCAATTAGTCCTGAACAAGAAGCTCTTGAAGCGCAGAAGGATGCGCAGGAAGTGCACAGGTATGCGGTATGGGGCCTCCTACCAGAGAATGCGAACACAAGGATCAAGAAGGTGATGGAGGCGCTCCGGGAAGAATTTGGTGGGCCGGAGATCGAGCCCCACATCACCATAGTCGGATCCTGCCTAATGACGGAAGATGAAGCGATCGGCTCATTTCGAGATGGTTGTAACTCGGTCAAGCAAATCTATTGCAAAGTCGAAAACTTCGAGACTAGTAAATTCTATTTCCAATGTCTTTCTCTCGTCATGGAAATAACCGAGGACGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

112

Amino Acids

12.59

Weight (kDa)

4.56

Isoelectric Point (pI)

60.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07310 FvH4_6g07320
rosa_chinensis	RchiOBHm_Chr3g0456921 RchiOBHm_Chr3g0456931
rosa_laevigata	RLG00000025263 RLG00000025264
rosa_multiflora	Rmu_co8272005.1_g000001 Rmu_sc0000133.1_g000001 Rmu_sc0000133.1_g000002 Rmu_sc0016008.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422360
rosa_rugosa	Rorug03G0017100 Rorug03G0017200 Rorug03G0017300 Rorug03G0017400
rosa_samantha	Rh3AG077200 Rh3AG077400 Rh3BG079200 Rh3BG079300 Rh3CG079100 Rh3CG079200 Rh3DG080900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	48
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	3 cut(s)	113, 174, 187
AcsI	RAATTY	2 cut(s)	137, 281
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	32
AhlI	ACTAGT	1 cut(s)	275
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	266
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	113, 174, 187
AoxI	GGCC	2 cut(s)	76, 146
ApaLI	GTGCAC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	137, 281
AspLEI	GCGC	3 cut(s)	37, 49, 127
AspS9I	GGNCC	2 cut(s)	76, 146
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	127, 160
BaeGI	GKGCMC	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	2 cut(s)	112, 218
BcnI	CCSGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	266
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	76, 146
BmiI	GGNNCC	2 cut(s)	77, 181
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	78, 148
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	130, 149
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	78, 148
Bsp1286I	GDGCHC	2 cut(s)	60, 162
Bsp143I	GATC	4 cut(s)	105, 153, 179, 207
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	78, 148
BspLI	GGNNCC	2 cut(s)	77, 181
BspPI	GGATC	3 cut(s)	113, 174, 187
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	4 cut(s)	105, 153, 179, 207
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	3 cut(s)	37, 49, 127
BstKTI	GATC	4 cut(s)	108, 156, 182, 210
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	105, 153, 179, 207
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 55
BstSCI	CCNGG	1 cut(s)	129
BstSLI	GKGCMC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	78, 148
BtsCI	GGATG	1 cut(s)	49
CfoI	GCGC	3 cut(s)	37, 49, 127
Cfr13I	GGNCC	2 cut(s)	76, 146
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	5 cut(s)	26, 78, 148, 160, 213
CviKI_1	RGCY	5 cut(s)	26, 78, 148, 160, 213
DpnI	GATC	4 cut(s)	107, 155, 181, 209
DpnII	GATC	4 cut(s)	105, 153, 179, 207
Eco24I	GRGCYC	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	1 cut(s)	313
FaiI	YATR	4 cut(s)	66, 73, 173, 311
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	1 cut(s)	309
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	276
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	3 cut(s)	36, 48, 126
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	78, 148
HapII	CCGG	2 cut(s)	130, 149
HhaI	GCGC	3 cut(s)	37, 49, 127
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	3 cut(s)	35, 47, 125
HinP1I	GCGC	3 cut(s)	35, 47, 125
HpaII	CCGG	2 cut(s)	130, 149
HphI	GGTGA	2 cut(s)	127, 160
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	5 cut(s)	14, 29, 109, 221, 271
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	34, 106
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	58, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 55
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	3 cut(s)	35, 47, 125
Kzo9I	GATC	4 cut(s)	105, 153, 179, 207
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	7 cut(s)	27, 35, 46, 99, 143, 162, 196
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	4 cut(s)	107, 155, 181, 209
MboI	GATC	4 cut(s)	105, 153, 179, 207
MboII	GAAGA	2 cut(s)	146, 209
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	2 cut(s)	60, 162
MluCI	AATT	3 cut(s)	6, 137, 281
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	89, 115, 316
MslI	CAYNNNNRTG	1 cut(s)	63
MspI	CCGG	2 cut(s)	130, 149
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	32, 55
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	4 cut(s)	105, 153, 179, 207
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	77, 181
NsbI	TGCGCA	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	129
Ple19I	CGATCG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	77, 181
PspPI	GGNCC	2 cut(s)	76, 146
PsuI	RGATCY	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	105, 153, 179, 207
Sau96I	GGNCC	2 cut(s)	76, 146
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	60, 162
SetI	ASST	4 cut(s)	28, 65, 117, 330
SfaNI	GCATC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	63
SpeI	ACTAGT	1 cut(s)	275
Sse9I	AATT	3 cut(s)	6, 137, 281
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	4 cut(s)	156, 220, 261, 270
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	3 cut(s)	6, 137, 281
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	137, 281
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.