Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013693

Physical Location & Seq

Genomic Coordinates Reverse (-)

4466620 .. 4470531

Gene Structure 3912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGGATTTTTACAGGCTAAACACTATGAATATGATATCAAGCTCATCGGGGAATGTGAATCAGGTTGAAAATGGTACTAGGACTACTACTGAAGGTGGTGCTGCTTATCGTGGTTCTCCAATAATAGTGAGTCACCGTAACTTCAACATGCTTCAATTTGAAACGGATCAGGGTATGACAGAGCTGATGAAGACCCAGATAGCCAATCACCCTCGTTACCCAGATTTGGTTTCTGCTTACATAGATTGCCAAAAGGTTGGGGCTCCACCAGAGATTAAAAGCCTACTTGAAGAAGTAGGTCGGCTAAGCTTCCCAACAAGCACTTGCAGGAGTGAGATAGGAGCTGATCCAGAACTAGATGAGTTCATGGACACATACTGTGGAGTTCTTCATACATACAAGGAAGAGCTTTCTAAACCGGTCGACGAAGCAACCACATTCTTGAACAACATTGAATTGCAGCTTAGCGACCTCTGCAAAGGCACATTCCAAAAAAACAACTGTGACCTTCAGGCAGCTGTACCCTTGCCAGATGAAGCTGTTGGAAGTTCAGAAGAGGAGTTTAGTTATGGGGAGATGGAAGCAGCTGAGGGTCAAGATACCTCCGCGTTTCGTGCTTGTGATAGGGAGCTGAAAGATATGCTGCTGCATAAGTACAGTGGCTACCTTGGCAAGCTGAAGAAGGACTTCTTAAAGTCGAGGAAGAAAGGAAAGCTTCCAAAGGATGCTAGGTCTGCACTAATGGACTGGTGGAACACTCACTATAGATGGCCATATCCTACGGAAGAGCAGAAGATGCAACTATCTGTGGCAACTGGTCTGGACCAAAGGCAGATAAACAATTGGTTCATAAACCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGAAGTTCGCTCTCATGGAGGGTGTTAGTGGTAGCATCAATGGTGAAGGAGGACCAAGTTTGCTATGCGACCCTGGATTCGGACATGATGATATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

331

Amino Acids

37.28

Weight (kDa)

5.04

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	64 - 102	6.3e-19	KNOX1 domain
KNOX2	PF03791	113 - 160	3.3e-23	KNOX2 domain
ELK	PF03789	211 - 232	6.6e-07	ELK domain
Homeobox_KN	PF05920	251 - 290	5.4e-18	Homeobox KN domain
Homeodomain	PF00046	259 - 291	1.6e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07460 FvH4_6g07460 FvH4_6g07460
malus_domestica	MD04G1215500.v1.1 MD12G1205700.v1.1
prunus_persica	Prupe.6G312900_v2.0.a1
pyrus_communis	pycom04g17070 pycom12g19370
rosa_chinensis	RchiOBHm_Chr3g0457121
rosa_laevigata	RLG00000025247
rosa_multiflora	Rmu_sc0000488.1_g000009
rosa_roxburghii	Rroxscaffold_6G00422170
rosa_rugosa	Rorug03G0018800
rosa_samantha	Rh3AG078700 Rh3BG080500 Rh3CG080500 Rh3DG082300
rosa_wichuraiana	Rw3G006760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	1 cut(s)	611
AciI	CCGC	1 cut(s)	609
AclWI	GGATC	2 cut(s)	177, 344
AcoI	YGGCCR	1 cut(s)	773
AcuI	CTGAAG	4 cut(s)	114, 497, 701, 906
AfaI	GTAC	3 cut(s)	79, 525, 659
AfiI	CCNNNNNNNGG	2 cut(s)	229, 971
AgeI	ACCGGT	1 cut(s)	421
AgsI	TTSAA	7 cut(s)	71, 148, 158, 164, 293, 448, 458
AjnI	CCWGG	1 cut(s)	964
AlwI	GGATC	2 cut(s)	177, 344
AoxI	GGCC	1 cut(s)	773
ApeKI	GCWGC	6 cut(s)	104, 463, 518, 587, 646, 649
ArsI	GACNNNNNNTTYG	4 cut(s)	881, 913, 953, 985
AsiGI	ACCGGT	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	826, 944
AsuHPI	GGTGA	3 cut(s)	128, 203, 947
AvaII	GGWCC	2 cut(s)	826, 944
BalI	TGGCCA	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	2 cut(s)	200, 894
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	6 cut(s)	91, 475, 530, 599, 633, 636
BccI	CCATC	3 cut(s)	574, 765, 889
BciT130I	CCWGG	1 cut(s)	966
BfaI	CTAG	3 cut(s)	81, 359, 732
BfmI	CTRYAG	1 cut(s)	766
BisI	GCNGC	6 cut(s)	105, 464, 519, 588, 647, 650
BlpI	GCTNAGC	2 cut(s)	308, 467
BlsI	GCNGC	6 cut(s)	106, 465, 520, 589, 648, 651
Bme1390I	CCNGG	1 cut(s)	966
Bme18I	GGWCC	2 cut(s)	826, 944
BmgT120I	GGNCC	2 cut(s)	826, 944
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	966
BmsI	GCATC	3 cut(s)	718, 789, 936
BpiI	GAAGAC	2 cut(s)	200, 894
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu1102I	GCTNAGC	2 cut(s)	308, 467
BsaJI	CCNNGG	2 cut(s)	670, 964
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 971
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	3 cut(s)	755, 823, 878
BseBI	CCWGG	1 cut(s)	966
BseDI	CCNNGG	2 cut(s)	670, 964
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	2 cut(s)	229, 971
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	3 cut(s)	755, 823, 878
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	6 cut(s)	91, 475, 530, 599, 633, 636
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	1 cut(s)	611
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	775
BshTI	ACCGGT	1 cut(s)	421
BsiEI	CGRYCG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	229, 971
BsnI	GGCC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	169, 349
Bsp1720I	GCTNAGC	2 cut(s)	308, 467
BspACI	CCGC	1 cut(s)	609
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	611
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	177, 344
BspQI	GCTCTTC	2 cut(s)	402, 783
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	3 cut(s)	755, 823, 878
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	670, 964
BssMI	GATC	2 cut(s)	169, 349
BssT1I	CCWWGG	1 cut(s)	670
Bst2UI	CCWGG	1 cut(s)	966
Bst4CI	ACNGT	4 cut(s)	140, 383, 506, 662
Bst6I	CTCTTC	4 cut(s)	402, 552, 783, 860
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstC8I	GCNNGC	1 cut(s)	677
BstDEI	CTNAG	3 cut(s)	308, 467, 591
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	611
BstKTI	GATC	2 cut(s)	172, 352
BstMBI	GATC	2 cut(s)	169, 349
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	6 cut(s)	477, 617, 672, 737, 799, 877
BstNI	CCWGG	1 cut(s)	966
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	964
BstSFI	CTRYAG	1 cut(s)	766
BstUI	CGCG	1 cut(s)	611
BstV1I	GCAGC	6 cut(s)	91, 475, 530, 599, 633, 636
BstV2I	GAAGAC	2 cut(s)	200, 894
BstXI	CCANNNNNNTGG	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	775
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	2 cut(s)	667, 871
Cac8I	GCNNGC	1 cut(s)	677
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	826, 944
Csp6I	GTAC	3 cut(s)	78, 524, 658
CspAI	ACCGGT	1 cut(s)	421
CviAII	CATG	6 cut(s)	151, 370, 892, 907, 977, 988
CviQI	GTAC	3 cut(s)	78, 524, 658
DdeI	CTNAG	3 cut(s)	308, 467, 591
DpnI	GATC	2 cut(s)	171, 351
DpnII	GATC	2 cut(s)	169, 349
EaeI	YGGCCR	1 cut(s)	773
Eam1104I	CTCTTC	4 cut(s)	402, 552, 783, 860
EarI	CTCTTC	4 cut(s)	402, 552, 783, 860
Eco130I	CCWWGG	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	268
Eco32I	GATATC	2 cut(s)	39, 985
Eco47I	GGWCC	2 cut(s)	826, 944
Eco57I	CTGAAG	4 cut(s)	114, 497, 701, 906
EcoRII	CCWGG	1 cut(s)	964
EcoRV	GATATC	2 cut(s)	39, 985
EcoT14I	CCWWGG	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	6 cut(s)	154, 373, 895, 910, 980, 991
FalI	AAGNNNNNCTT	6 cut(s)	674, 706, 677, 709, 702, 734
FatI	CATG	6 cut(s)	150, 369, 891, 906, 976, 987
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	6 cut(s)	105, 464, 519, 588, 647, 650
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	6 cut(s)	105, 464, 519, 588, 647, 650
FspBI	CTAG	3 cut(s)	81, 359, 732
GluI	GCNGC	6 cut(s)	105, 464, 519, 588, 647, 650
HaeIII	GGCC	1 cut(s)	775
HapII	CCGG	1 cut(s)	422
Hin1II	CATG	6 cut(s)	154, 373, 895, 910, 980, 991
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	2 cut(s)	310, 716
HinfI	GANTC	3 cut(s)	61, 133, 969
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	3 cut(s)	128, 203, 947
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	556, 886, 974
Hpy188III	TCNNGA	4 cut(s)	353, 445, 599, 824
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	89, 521, 679, 932
HpyCH4III	ACNGT	4 cut(s)	140, 383, 506, 662
HpyCH4V	TGCA	6 cut(s)	330, 463, 480, 652, 740, 802
HpyF10VI	GCNNNNNNNGC	6 cut(s)	477, 617, 672, 737, 799, 877
HpyF3I	CTNAG	3 cut(s)	308, 467, 591
Hsp92II	CATG	6 cut(s)	154, 373, 895, 910, 980, 991
Kzo9I	GATC	2 cut(s)	169, 349
LguI	GCTCTTC	2 cut(s)	402, 783
LmnI	GCTCC	3 cut(s)	271, 344, 631
Lsp1109I	GCAGC	6 cut(s)	91, 475, 530, 599, 633, 636
LweI	GCATC	3 cut(s)	718, 789, 936
MaeI	CTAG	3 cut(s)	81, 359, 732
MaeIII	GTNAC	4 cut(s)	134, 140, 218, 506
MalI	GATC	2 cut(s)	171, 351
MboI	GATC	2 cut(s)	169, 349
MfeI	CAATTG	1 cut(s)	844
MhlI	GDGCHC	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	775
MluCI	AATT	3 cut(s)	158, 458, 844
MluNI	TGGCCA	1 cut(s)	775
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	9 cut(s)	225, 485, 553, 586, 616, 696, 861, 904, 935
Mox20I	TGGCCA	1 cut(s)	775
MroXI	GAANNNNTTC	1 cut(s)	689
MscI	TGGCCA	1 cut(s)	775
MseI	TTAA	2 cut(s)	279, 695
Msp20I	TGGCCA	1 cut(s)	775
MspA1I	CMGCKG	2 cut(s)	521, 590
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	966
MunI	CAATTG	1 cut(s)	844
MvaI	CCWGG	1 cut(s)	966
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	6 cut(s)	477, 617, 672, 737, 799, 877
NdeII	GATC	2 cut(s)	169, 349
NlaIII	CATG	6 cut(s)	154, 373, 895, 910, 980, 991
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	134, 506
NspI	RCATGY	1 cut(s)	154
PciSI	GCTCTTC	2 cut(s)	402, 783
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	2 cut(s)	61, 969
PinAI	ACCGGT	1 cut(s)	421
PkrI	GCNGC	6 cut(s)	106, 465, 520, 589, 648, 651
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	964
PspGI	CCWGG	1 cut(s)	964
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	826, 944
PvuII	CAGCTG	2 cut(s)	521, 590
RsaI	GTAC	3 cut(s)	79, 525, 659
RsaNI	GTAC	3 cut(s)	78, 524, 658
SalI	GTCGAC	1 cut(s)	425
SapI	GCTCTTC	2 cut(s)	402, 783
SaqAI	TTAA	2 cut(s)	279, 695
SatI	GCNGC	6 cut(s)	105, 464, 519, 588, 647, 650
Sau3AI	GATC	2 cut(s)	169, 349
Sau96I	GGNCC	2 cut(s)	826, 944
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	966
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	3 cut(s)	718, 789, 936
SfcI	CTRYAG	1 cut(s)	766
SinI	GGWCC	2 cut(s)	826, 944
Sse9I	AATT	3 cut(s)	158, 458, 844
SsiI	CCGC	1 cut(s)	609
SspMI	CTAG	3 cut(s)	81, 359, 732
StyD4I	CCNGG	1 cut(s)	964
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	4 cut(s)	140, 383, 506, 662
TaqI	TCGA	2 cut(s)	426, 701
TasI	AATT	3 cut(s)	158, 458, 844
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	2 cut(s)	61, 969
Tru1I	TTAA	2 cut(s)	279, 695
Tru9I	TTAA	2 cut(s)	279, 695
TscAI	CASTG	2 cut(s)	667, 878
TseFI	GTSAC	2 cut(s)	134, 506
TseI	GCWGC	6 cut(s)	104, 463, 518, 587, 646, 649
Tsp45I	GTSAC	2 cut(s)	134, 506
TspDTI	ATGAA	7 cut(s)	44, 206, 358, 383, 552, 841, 908
TspGWI	ACGGA	2 cut(s)	182, 800
TspRI	CASTG	2 cut(s)	667, 878
VpaK11BI	GGWCC	2 cut(s)	826, 944
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	3 cut(s)	81, 359, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.