Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005149

Physical Location & Seq

Genomic Coordinates Forward (+)

1493388 .. 1498051

Gene Structure 4664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0018800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAGTAACTTGGGGACTTCCAAAGCTATGTCTTCAGCATTTCCACATCTCCCTGCCCCTCTTGATGTCAATTATTCCAGATTGCCAGATTCTTTTCAGGTTTCCGCACAAAGAGAAAAGCCTATGCATTCAATGTTACCACAGTCTTCTTCCCTTGGGAACTCATTTCCATCATCGTCCAGGCTTCCCTGTGACAGTCAGATTTCTTCAGTTTACCCTTATGAAAGACATTCCCAAATTTCTCCAATCAATAAGTTACCAAGTGGAGAATCACTGTCACTGACCCATTCACAGTTACAATCTACACCAGTGGCTAGTTACCCTGAGCAAAATAAAGATATTTCCTGGTGCCCAGATTCAATTCAGGAGTTTCTGCACTTTCCTGAAAATCTCCCTGATCAGAATGGCCTGGTAGATACTAGTACTGGTGTCATAATGTCTGATGATCATGCTGAAAAGAGTGATTGGTCTGACTTGTATCCATTAATTTCTTTTGATGGTCCTCTGGATCCATATTGGGAGCTTTCGATTGATGATGTTCCTGCAGTGGATCCCAAACCGGAGGTGTTGAAGCATTCTTCTGATATCCCGGTGCAGCAGCCCGAGATTCAACAGCATCAGCCAGTACAATCTGGAGAAATTTTTACGAGCCCTGACCCAGTGTCCACTGCACCTTCAACCAAAGCTAGAATGCGTTGGACGCAAGAACTTCATGAGGCCTTTGTTGAAGCTGTCAACCAGCTTGGTGGTAGTGAAAGAGCCACTCCTAAGGGTATCTTAAACGTCATGAAGGTTGAAAGCTTGACAATCTATCATGTAAAAAGCCATTTACAGAAATATAGAACAGCCAGATACAAACCAGAGTCATCAGAAGGAACTTGTGAGAAGAATCTGACTTCTGTTGAAGAAATGAATTCTATAGACTTGAAAACGAGCAGTATGGGGATTACTGAAGCATTGCGGTTGCAGGTAGAACTCCAGAAGCAGCTTCATGAACAACTTGAGAGTCAAAGAAAGTTGCAGTTGGAAATTGAGGAACAGTCAAAGTACCTTGAAAAGATGTTTGAGCAACAAAGGAAGATGGAAGACAACAGGGTCAAGCCGACATCATCAATGTCAGATGAGCATAATAAAATAGGAACCAGCGCTCCTGTGGATGAAGGTTCACAAGATGCAAGTATGAAACAGAAGGCGCAAGAATCTGAAACTCATGAGACTCATGATCCTCTAGGTGATGCCGATTCTGGTGCCGTCCCCACAAAACGAGCAAGGACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

426

Amino Acids

47.55

Weight (kDa)

5.1

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	230 - 281	5.1e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	315 - 361	5.1e-17	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26850 AT5G26850 AT5G26850 AT5G26850
fragaria_vesca	FvH4_6g07470 FvH4_6g07470 FvH4_6g07470
malus_domestica	MD04G1215200.v1.1 MD12G1205600.v1.1
prunus_persica	Prupe.6G312700_v2.0.a1 Prupe.6G312700_v2.0.a1 Prupe.6G312700_v2.0.a1
pyrus_communis	pycom04g17060 pycom12g19350 pycom12g19360 pycom13g28880
rosa_chinensis	RchiOBHm_Chr3g0457131
rosa_laevigata	RLG00000025246
rosa_roxburghii	Rroxscaffold_6G00422160
rosa_rugosa	Rorug03G0018800 Rorug03G0018900 Rorug03G0019000 Rorug03G0019100 Rorug03G0019100 Rorug03G0019200
rosa_samantha	Rh3AG078900 Rh3BG080600 Rh3CG080700 Rh3DG082500
rosa_wichuraiana	Rw3G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1094
Acc36I	ACCTGC	1 cut(s)	958
AccB1I	GGYRCC	2 cut(s)	348, 1247
AciI	CCGC	2 cut(s)	105, 961
AclWI	GGATC	5 cut(s)	503, 516, 545, 558, 1217
AcsI	RAATTY	3 cut(s)	237, 639, 913
AcuI	CTGAAG	3 cut(s)	18, 192, 972
AfaI	GTAC	3 cut(s)	424, 627, 1049
AfeI	AGCGCT	1 cut(s)	1147
AhdI	GACNNNNNGTC	1 cut(s)	661
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	3 cut(s)	179, 344, 408
AloI	GAACNNNNNNTCC	2 cut(s)	1132, 1164
AluBI	AGCT	7 cut(s)	26, 523, 686, 731, 742, 801, 988
AluI	AGCT	7 cut(s)	26, 523, 686, 731, 742, 801, 988
Alw26I	GTCTC	1 cut(s)	1208
AlwI	GGATC	5 cut(s)	503, 516, 545, 558, 1217
Ama87I	CYCGRG	1 cut(s)	602
Aor51HI	AGCGCT	1 cut(s)	1147
AoxI	GGCC	2 cut(s)	406, 717
ApeKI	GCWGC	3 cut(s)	595, 598, 985
ApoI	RAATTY	3 cut(s)	237, 639, 913
AseI	ATTAAT	1 cut(s)	485
AspLEI	GCGC	2 cut(s)	1148, 1195
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	1244
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	353
BamHI	GGATCC	2 cut(s)	508, 550
BanI	GGYRCC	2 cut(s)	348, 1247
BanII	GRGCYC	1 cut(s)	653
BbsI	GAAGAC	3 cut(s)	24, 138, 1092
BbvI	GCAGC	3 cut(s)	607, 610, 997
BccI	CCATC	3 cut(s)	178, 491, 1075
BceAI	ACGGC	1 cut(s)	1235
BcgI	CGANNNNNNTGC	2 cut(s)	1229, 1263
BciT130I	CCWGG	3 cut(s)	181, 346, 410
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	2 cut(s)	397, 445
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	1208
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	4 cut(s)	315, 420, 687, 1229
BfmI	CTRYAG	2 cut(s)	543, 918
BfoI	RGCGCY	1 cut(s)	1149
BfuAI	ACCTGC	1 cut(s)	958
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	3 cut(s)	596, 599, 986
BlsI	GCNGC	3 cut(s)	597, 600, 987
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	4 cut(s)	181, 346, 410, 590
Bme18I	GGWCC	1 cut(s)	500
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	5 cut(s)	350, 510, 552, 1141, 1249
BmrFI	CCNGG	4 cut(s)	181, 346, 410, 590
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	3 cut(s)	625, 1162, 1225
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	3 cut(s)	24, 138, 1092
BpmI	CTGGAG	2 cut(s)	654, 962
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	1022
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	1132, 1162
Bse1I	ACTGG	5 cut(s)	308, 430, 623, 659, 1279
Bse21I	CCTNAGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	956
BseBI	CCWGG	3 cut(s)	181, 346, 410
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	1162
BseMI	GCAATG	1 cut(s)	956
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	5 cut(s)	308, 430, 623, 659, 1279
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	607, 610, 997
BsgI	GTGCAG	3 cut(s)	359, 614, 654
BshFI	GGCC	2 cut(s)	408, 719
BshNI	GGYRCC	2 cut(s)	348, 1247
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	560, 590
BslFI	GGGAC	2 cut(s)	28, 1238
BsmAI	GTCTC	1 cut(s)	1208
BsmFI	GGGAC	2 cut(s)	28, 1238
BsmI	GAATGC	3 cut(s)	127, 574, 696
BsnI	GGCC	2 cut(s)	408, 719
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	353, 653
Bsp143I	GATC	5 cut(s)	397, 445, 508, 550, 1222
BspACI	CCGC	2 cut(s)	105, 961
BspANI	GGCC	2 cut(s)	408, 719
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	5 cut(s)	712, 786, 991, 1210, 1219
BspLI	GGNNCC	5 cut(s)	350, 510, 552, 1141, 1249
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	5 cut(s)	503, 516, 545, 558, 1217
BspT107I	GGYRCC	2 cut(s)	348, 1247
BsrDI	GCAATG	1 cut(s)	956
BsrI	ACTGG	5 cut(s)	308, 430, 623, 659, 1279
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	397, 445, 508, 550, 1222
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	3 cut(s)	181, 346, 410
Bst4CI	ACNGT	5 cut(s)	144, 197, 276, 294, 1041
BstDEI	CTNAG	2 cut(s)	324, 768
BstF5I	GGATG	1 cut(s)	1162
BstH2I	RGCGCY	1 cut(s)	1149
BstHHI	GCGC	2 cut(s)	1148, 1195
BstKTI	GATC	5 cut(s)	400, 448, 511, 553, 1225
BstMAI	GTCTC	1 cut(s)	1208
BstMBI	GATC	5 cut(s)	397, 445, 508, 550, 1222
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	3 cut(s)	181, 346, 410
BstSCI	CCNGG	4 cut(s)	179, 344, 408, 588
BstSFI	CTRYAG	2 cut(s)	543, 918
BstSLI	GKGCMC	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	607, 610, 997
BstV2I	GAAGAC	3 cut(s)	24, 138, 1092
BstX2I	RGATCY	2 cut(s)	508, 550
BstXI	CCANNNNNNTGG	1 cut(s)	746
BstYI	RGATCY	2 cut(s)	508, 550
Bsu36I	CCTNAGG	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	408, 719
BtsCI	GGATG	1 cut(s)	1162
BtsI	GCAGTG	2 cut(s)	552, 666
BtsIMutI	CAGTG	6 cut(s)	272, 278, 315, 552, 666, 666
BveI	ACCTGC	1 cut(s)	958
CciI	TCATGA	5 cut(s)	712, 786, 991, 1210, 1219
CfoI	GCGC	2 cut(s)	1148, 1195
Cfr13I	GGNCC	1 cut(s)	500
CseI	GACGC	1 cut(s)	709
Csp6I	GTAC	3 cut(s)	423, 626, 1048
CviAII	CATG	7 cut(s)	449, 713, 787, 815, 992, 1211, 1220
CviQI	GTAC	3 cut(s)	423, 626, 1048
DdeI	CTNAG	2 cut(s)	324, 768
DpnI	GATC	5 cut(s)	399, 447, 510, 552, 1224
DpnII	GATC	5 cut(s)	397, 445, 508, 550, 1222
DrdI	GACNNNNNNGTC	1 cut(s)	1094
DriI	GACNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	1094
Eam1105I	GACNNNNNGTC	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	500
Eco47III	AGCGCT	1 cut(s)	1147
Eco57I	CTGAAG	3 cut(s)	18, 192, 972
Eco81I	CCTNAGG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	3 cut(s)	179, 344, 408
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	7 cut(s)	452, 716, 790, 818, 995, 1214, 1223
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	2 cut(s)	28, 1238
FatI	CATG	7 cut(s)	448, 712, 786, 814, 991, 1210, 1219
FbaI	TGATCA	2 cut(s)	397, 445
Fnu4HI	GCNGC	3 cut(s)	596, 599, 986
FokI	GGATG	1 cut(s)	1169
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	3 cut(s)	596, 599, 986
FspBI	CTAG	4 cut(s)	315, 420, 687, 1229
GlaI	GCGC	2 cut(s)	1147, 1194
GluI	GCNGC	3 cut(s)	596, 599, 986
GsuI	CTGGAG	2 cut(s)	654, 962
HaeII	RGCGCY	1 cut(s)	1149
HaeIII	GGCC	2 cut(s)	408, 719
HapII	CCGG	2 cut(s)	560, 590
HgaI	GACGC	1 cut(s)	709
HhaI	GCGC	2 cut(s)	1148, 1195
Hin1II	CATG	7 cut(s)	452, 716, 790, 818, 995, 1214, 1223
Hin6I	GCGC	2 cut(s)	1146, 1193
HinP1I	GCGC	2 cut(s)	1146, 1193
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	799
HpaII	CCGG	2 cut(s)	560, 590
HphI	GGTGA	1 cut(s)	1244
Hpy166II	GTNNAC	4 cut(s)	214, 666, 736, 1166
Hpy188I	TCNGA	9 cut(s)	201, 402, 442, 472, 583, 871, 894, 1120, 1204
Hpy8I	GTNNAC	4 cut(s)	214, 666, 736, 1166
HpyAV	CCTTC	5 cut(s)	684, 784, 866, 1154, 1183
HpyCH4III	ACNGT	5 cut(s)	144, 197, 276, 294, 1041
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	8 cut(s)	127, 376, 545, 595, 671, 967, 1021, 1175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpyF3I	CTNAG	2 cut(s)	324, 768
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	7 cut(s)	452, 716, 790, 818, 995, 1214, 1223
HspAI	GCGC	2 cut(s)	1146, 1193
Ksp22I	TGATCA	2 cut(s)	397, 445
Kzo9I	GATC	5 cut(s)	397, 445, 508, 550, 1222
LmnI	GCTCC	2 cut(s)	520, 1153
Lsp1109I	GCAGC	3 cut(s)	607, 610, 997
LweI	GCATC	3 cut(s)	625, 1162, 1225
MaeI	CTAG	4 cut(s)	315, 420, 687, 1229
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	7 cut(s)	5, 135, 191, 255, 276, 294, 317
MalI	GATC	5 cut(s)	399, 447, 510, 552, 1224
MboI	GATC	5 cut(s)	397, 445, 508, 550, 1222
MboII	GAAGA	9 cut(s)	24, 138, 141, 198, 570, 898, 917, 1090, 1097
MflI	RGATCY	2 cut(s)	508, 550
MhlI	GDGCHC	2 cut(s)	353, 653
MluCI	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
MlyI	GAGTC	3 cut(s)	872, 1015, 1210
MmeI	TCCRAC	2 cut(s)	677, 1005
MnlI	CCTC	6 cut(s)	69, 513, 556, 709, 1027, 1236
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	2 cut(s)	485, 779
MspI	CCGG	2 cut(s)	560, 590
MspR9I	CCNGG	4 cut(s)	181, 346, 410, 590
Mva1269I	GAATGC	3 cut(s)	127, 574, 696
MvaI	CCWGG	3 cut(s)	181, 346, 410
MwoI	GCNNNNNNNGC	1 cut(s)	700
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	397, 445, 508, 550, 1222
NlaIII	CATG	7 cut(s)	452, 716, 790, 818, 995, 1214, 1223
NlaIV	GGNNCC	5 cut(s)	350, 510, 552, 1141, 1249
NmuCI	GTSAC	2 cut(s)	191, 276
NsiI	ATGCAT	1 cut(s)	129
PagI	TCATGA	5 cut(s)	712, 786, 991, 1210, 1219
PceI	AGGCCT	1 cut(s)	719
PctI	GAATGC	3 cut(s)	127, 574, 696
PfeI	GAWTC	7 cut(s)	89, 269, 356, 607, 889, 1199, 1241
PkrI	GCNGC	3 cut(s)	597, 600, 987
PleI	GAGTC	3 cut(s)	871, 1014, 1210
PpsI	GAGTC	3 cut(s)	871, 1014, 1210
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	3 cut(s)	179, 344, 408
PspGI	CCWGG	3 cut(s)	179, 344, 408
PspN4I	GGNNCC	5 cut(s)	350, 510, 552, 1141, 1249
PspPI	GGNCC	1 cut(s)	500
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	508, 550
RsaI	GTAC	3 cut(s)	424, 627, 1049
RsaNI	GTAC	3 cut(s)	423, 626, 1048
SaqAI	TTAA	2 cut(s)	485, 779
SatI	GCNGC	3 cut(s)	596, 599, 986
Sau3AI	GATC	5 cut(s)	397, 445, 508, 550, 1222
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	3 cut(s)	872, 1015, 1210
ScrFI	CCNGG	4 cut(s)	181, 346, 410, 590
SduI	GDGCHC	2 cut(s)	353, 653
SfaNI	GCATC	3 cut(s)	625, 1162, 1225
SfcI	CTRYAG	2 cut(s)	543, 918
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	1001
SmoI	CTYRAG	1 cut(s)	1001
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	2 cut(s)	105, 961
SspMI	CTAG	4 cut(s)	315, 420, 687, 1229
StuI	AGGCCT	1 cut(s)	719
StyD4I	CCNGG	4 cut(s)	179, 344, 408, 588
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	5 cut(s)	144, 197, 276, 294, 1041
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	1 cut(s)	527
TasI	AATT	7 cut(s)	70, 237, 360, 486, 639, 913, 1029
TatI	WGTACW	2 cut(s)	422, 625
TfiI	GAWTC	7 cut(s)	89, 269, 356, 607, 889, 1199, 1241
Tru1I	TTAA	2 cut(s)	485, 779
Tru9I	TTAA	2 cut(s)	485, 779
TscAI	CASTG	6 cut(s)	279, 285, 315, 552, 666, 673
TseFI	GTSAC	2 cut(s)	191, 276
TseI	GCWGC	3 cut(s)	595, 598, 985
Tsp45I	GTSAC	2 cut(s)	191, 276
TspDTI	ATGAA	8 cut(s)	237, 701, 803, 926, 980, 1008, 1173, 1196
TspRI	CASTG	6 cut(s)	279, 285, 315, 552, 666, 673
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	3 cut(s)	237, 639, 913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1150
XspI	CTAG	4 cut(s)	315, 420, 687, 1229
ZrmI	AGTACT	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.