Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005149

Physical Location & Seq

Genomic Coordinates Forward (+)

1501066 .. 1502049

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0018900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATTGGTGGGATAGAGATATAGAACTCATATTCATTCAATTCAAAGATGTGCCTTTCTCGTACTCTGTGGAACTGGGTTCAACAGATGAAACGGTGGACGATATCAAAGAAAAGCTAAGGAAGGAATTTCCGAATGGTAGACACCTTAAGCCCCATGAAACCCTTGTTTACAAGAATCAAGAACTGAAGGATGGACACCTATTGGCCGACTATCATCTCCCCAAGAACACCCTCCTGTATGTAGCTGAGAGGAACACCAATCCCTCGAGTCCTGAGAACCTCCAAGAGAAAGAGGAAGAGCCTAGTGTTCCGTCGAGTCCTAAGAACCTCGAAGAGAAGGACCTCAAAGAGAAACAGGAAGGGCCTTGGGATTTGGGTGTCATTCAATCAGTGAAACACAAGCAACTTCTGCCAGTGGATTTATTAACAATGGACGAGCCCTTTTACGACAACCCTTTTATTAAGCCTAAACAGATGTATGTCAACACAAATTCTACCGTTAAGGATGGAACGTCAACGACTAGGGTTTGTGACAAGAGAGTTCGTACGAGCCCCCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGCGCATGAGACGACTAGGGTTTGTGACAAGAGAGTTCGTATGAGCCCTCCACCTAATGCTGTAGGTTCCAATGCCATCGAGATCGTTGCGCATGAGACGACTAGGGTTTGTGACAAGAAAGCTCGAATGAGCCCCCCACATAATGTAGGTTCCAATGCCATCGAGATCATTGAGGATGAGACGACTAGGGTTTGCGACAAGAGAGCACGTATGAGCCCCCCATCTAATGCTGTAGGTTCCAATGCCATCGAGCTAGGGATAGGCGGGTTCTCGCCGCGGGCATCTGCAGGGGTTGAAGGTGCCAAGAAGAAGGGTCGGCCTGTGGGAAGTAAAAATAAGAAGACCTATAAGGGACTTGCTTATGAGCAGTTCCCATGGTTACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

36.76

Weight (kDa)

7.1

Isoelectric Point (pI)

60.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26850 AT5G26850 AT5G26850 AT5G26850
fragaria_vesca	FvH4_6g07470 FvH4_6g07470 FvH4_6g07470
malus_domestica	MD04G1215200.v1.1 MD12G1205600.v1.1
prunus_persica	Prupe.6G312700_v2.0.a1 Prupe.6G312700_v2.0.a1 Prupe.6G312700_v2.0.a1
pyrus_communis	pycom04g17060 pycom12g19350 pycom12g19360 pycom13g28880
rosa_chinensis	RchiOBHm_Chr3g0457131
rosa_laevigata	RLG00000025246
rosa_roxburghii	Rroxscaffold_6G00422160
rosa_rugosa	Rorug03G0018800 Rorug03G0018900 Rorug03G0019000 Rorug03G0019100 Rorug03G0019100 Rorug03G0019200
rosa_samantha	Rh3AG078900 Rh3BG080600 Rh3CG080700 Rh3DG082500
rosa_wichuraiana	Rw3G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	600, 687
AccB1I	GGYRCC	1 cut(s)	896
AccI	GTMKAC	1 cut(s)	142
AccII	CGCG	1 cut(s)	874
AciI	CCGC	3 cut(s)	861, 872, 874
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	128, 493
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	65, 550
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	41, 46, 84, 389, 893
AluBI	AGCT	4 cut(s)	118, 248, 719, 850
AluI	AGCT	4 cut(s)	118, 248, 719, 850
Alw21I	GWGCWC	1 cut(s)	805
Alw26I	GTCTC	3 cut(s)	599, 686, 770
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	3 cut(s)	207, 365, 914
ApoI	RAATTY	2 cut(s)	128, 493
AspLEI	GCGC	2 cut(s)	601, 688
AspS9I	GGNCC	2 cut(s)	343, 365
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	896
BanII	GRGCYC	5 cut(s)	444, 557, 644, 731, 815
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	1 cut(s)	805
BccI	CCATC	7 cut(s)	188, 503, 593, 680, 764, 826, 851
BcgI	CGANNNNNNTGC	4 cut(s)	578, 612, 665, 699
BcoDI	GTCTC	3 cut(s)	599, 686, 770
BfaI	CTAG	6 cut(s)	306, 525, 612, 699, 783, 851
BfmI	CTRYAG	4 cut(s)	570, 657, 828, 882
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	872
BlsI	GCNGC	1 cut(s)	873
Bme18I	GGWCC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	343, 365
BmiI	GGNNCC	5 cut(s)	577, 664, 748, 835, 898
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	887
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	944
Bpu10I	CCTNAGC	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	806
BsaJI	CCNNGG	3 cut(s)	368, 872, 971
Bse1I	ACTGG	2 cut(s)	81, 416
BseDI	CCNNGG	3 cut(s)	368, 872, 971
BseGI	GGATG	3 cut(s)	199, 514, 778
BseMII	CTCAG	2 cut(s)	240, 267
BseNI	ACTGG	2 cut(s)	81, 416
Bsh1236I	CGCG	1 cut(s)	874
BshFI	GGCC	3 cut(s)	209, 367, 916
BshNI	GGYRCC	1 cut(s)	896
BsiHKAI	GWGCWC	1 cut(s)	805
BsiHKCI	CYCGRG	1 cut(s)	268
BsiWI	CGTACG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	963
BsmAI	GTCTC	3 cut(s)	599, 686, 770
BsmBI	CGTCTC	3 cut(s)	599, 686, 770
BsmFI	GGGAC	1 cut(s)	963
BsnI	GGCC	3 cut(s)	209, 367, 916
BsoBI	CYCGRG	1 cut(s)	268
Bsp1286I	GDGCHC	6 cut(s)	444, 557, 644, 731, 805, 815
Bsp143I	GATC	3 cut(s)	591, 678, 762
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	3 cut(s)	861, 872, 874
BspANI	GGCC	3 cut(s)	209, 367, 916
BspCNI	CTCAG	2 cut(s)	241, 268
BspFNI	CGCG	1 cut(s)	874
BspLI	GGNNCC	5 cut(s)	577, 664, 748, 835, 898
BspMAI	CTGCAG	1 cut(s)	886
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	896
BspTI	CTTAAG	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	81, 416
BssECI	CCNNGG	3 cut(s)	368, 872, 971
BssMI	GATC	3 cut(s)	591, 678, 762
BssT1I	CCWWGG	2 cut(s)	368, 971
Bst4CI	ACNGT	3 cut(s)	97, 502, 981
Bst6I	CTCTTC	2 cut(s)	294, 330
BstAFI	CTTAAG	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	806
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	4 cut(s)	119, 249, 276, 324
BstDSI	CCRYGG	2 cut(s)	872, 971
BstF5I	GGATG	3 cut(s)	199, 514, 778
BstFNI	CGCG	1 cut(s)	874
BstHHI	GCGC	2 cut(s)	601, 688
BstKTI	GATC	3 cut(s)	594, 681, 765
BstMAI	GTCTC	3 cut(s)	599, 686, 770
BstMBI	GATC	3 cut(s)	591, 678, 762
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstSFI	CTRYAG	4 cut(s)	570, 657, 828, 882
BstUI	CGCG	1 cut(s)	874
BstV2I	GAAGAC	1 cut(s)	944
BsuRI	GGCC	3 cut(s)	209, 367, 916
BtgI	CCRYGG	2 cut(s)	872, 971
BtsCI	GGATG	3 cut(s)	199, 514, 778
BtsIMutI	CAGTG	2 cut(s)	399, 423
Cac8I	GCNNGC	1 cut(s)	876
CfoI	GCGC	2 cut(s)	601, 688
Cfr13I	GGNCC	2 cut(s)	343, 365
Cfr42I	CCGCGG	1 cut(s)	875
Csp6I	GTAC	2 cut(s)	64, 549
CviAII	CATG	4 cut(s)	158, 602, 689, 972
CviQI	GTAC	2 cut(s)	64, 549
DdeI	CTNAG	4 cut(s)	119, 249, 276, 324
DpnI	GATC	3 cut(s)	593, 680, 764
DpnII	GATC	3 cut(s)	591, 678, 762
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	294, 330
EarI	CTCTTC	2 cut(s)	294, 330
Eco130I	CCWWGG	2 cut(s)	368, 971
Eco24I	GRGCYC	5 cut(s)	444, 557, 644, 731, 815
Eco32I	GATATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	268
EcoO109I	RGGNCCY	2 cut(s)	343, 365
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	368, 971
EcoT38I	GRGCYC	5 cut(s)	444, 557, 644, 731, 815
ErhI	CCWWGG	2 cut(s)	368, 971
Esp3I	CGTCTC	3 cut(s)	599, 686, 770
FaeI	CATG	4 cut(s)	161, 605, 692, 975
FaqI	GGGAC	1 cut(s)	963
FatI	CATG	4 cut(s)	157, 601, 688, 971
FauI	CCCGC	2 cut(s)	854, 867
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	872
FokI	GGATG	3 cut(s)	206, 521, 785
FriOI	GRGCYC	5 cut(s)	444, 557, 644, 731, 815
Fsp4HI	GCNGC	1 cut(s)	872
FspBI	CTAG	6 cut(s)	306, 525, 612, 699, 783, 851
FspI	TGCGCA	2 cut(s)	600, 687
GlaI	GCGC	2 cut(s)	600, 687
GluI	GCNGC	1 cut(s)	872
HaeIII	GGCC	3 cut(s)	209, 367, 916
HhaI	GCGC	2 cut(s)	601, 688
Hin1II	CATG	4 cut(s)	161, 605, 692, 975
Hin6I	GCGC	2 cut(s)	599, 686
HinP1I	GCGC	2 cut(s)	599, 686
HincII	GTYRAC	2 cut(s)	487, 519
HindII	GTYRAC	2 cut(s)	487, 519
HinfI	GANTC	3 cut(s)	178, 271, 319
Hpy166II	GTNNAC	5 cut(s)	100, 143, 172, 487, 519
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	5 cut(s)	182, 275, 589, 676, 760
Hpy8I	GTNNAC	5 cut(s)	100, 143, 172, 487, 519
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	6 cut(s)	118, 184, 334, 356, 887, 901
HpyCH4III	ACNGT	3 cut(s)	97, 502, 981
HpyCH4IV	ACGT	2 cut(s)	515, 805
HpyCH4V	TGCA	1 cut(s)	884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	4 cut(s)	119, 249, 276, 324
HpySE526I	ACGT	2 cut(s)	515, 805
Hsp92II	CATG	4 cut(s)	161, 605, 692, 975
HspAI	GCGC	2 cut(s)	599, 686
KspI	CCGCGG	1 cut(s)	875
Kzo9I	GATC	3 cut(s)	591, 678, 762
LguI	GCTCTTC	1 cut(s)	294
LpnPI	CCDG	7 cut(s)	62, 251, 288, 344, 429, 870, 930
LweI	GCATC	1 cut(s)	887
MaeI	CTAG	6 cut(s)	306, 525, 612, 699, 783, 851
MaeII	ACGT	2 cut(s)	515, 805
MaeIII	GTNAC	4 cut(s)	533, 620, 707, 975
MalI	GATC	3 cut(s)	593, 680, 764
MboI	GATC	3 cut(s)	591, 678, 762
MboII	GAAGA	4 cut(s)	311, 347, 916, 949
MhlI	GDGCHC	6 cut(s)	444, 557, 644, 731, 805, 815
MluCI	AATT	3 cut(s)	41, 128, 493
MlyI	GAGTC	2 cut(s)	280, 328
MnlI	CCTC	9 cut(s)	245, 246, 277, 289, 293, 341, 356, 654, 763
MseI	TTAA	4 cut(s)	150, 428, 465, 504
MspA1I	CMGCKG	1 cut(s)	874
MspCI	CTTAAG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	874
MwoI	GCNNNNNNNGC	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	971
NdeII	GATC	3 cut(s)	591, 678, 762
NlaIII	CATG	4 cut(s)	161, 605, 692, 975
NlaIV	GGNNCC	5 cut(s)	577, 664, 748, 835, 898
NmuCI	GTSAC	3 cut(s)	533, 620, 707
NsbI	TGCGCA	2 cut(s)	600, 687
PaeR7I	CTCGAG	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	178
Pfl23II	CGTACG	1 cut(s)	548
PkrI	GCNGC	1 cut(s)	873
PleI	GAGTC	2 cut(s)	279, 327
PpsI	GAGTC	2 cut(s)	279, 327
Ppu21I	YACGTR	1 cut(s)	806
PpuMI	RGGWCCY	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	343
PspLI	CGTACG	1 cut(s)	548
PspN4I	GGNNCC	5 cut(s)	577, 664, 748, 835, 898
PspPI	GGNCC	2 cut(s)	343, 365
PspPPI	RGGWCCY	1 cut(s)	343
PspXI	VCTCGAGB	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	886
RsaI	GTAC	2 cut(s)	65, 550
RsaNI	GTAC	2 cut(s)	64, 549
SacII	CCGCGG	1 cut(s)	875
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	4 cut(s)	150, 428, 465, 504
SatI	GCNGC	1 cut(s)	872
Sau3AI	GATC	3 cut(s)	591, 678, 762
Sau96I	GGNCC	2 cut(s)	343, 365
SchI	GAGTC	2 cut(s)	280, 328
SduI	GDGCHC	6 cut(s)	444, 557, 644, 731, 805, 815
SfaNI	GCATC	1 cut(s)	887
SfcI	CTRYAG	4 cut(s)	570, 657, 828, 882
Sfr274I	CTCGAG	1 cut(s)	268
Sfr303I	CCGCGG	1 cut(s)	875
SgrBI	CCGCGG	1 cut(s)	875
SinI	GGWCC	1 cut(s)	343
SlaI	CTCGAG	1 cut(s)	268
SmlI	CTYRAG	2 cut(s)	149, 268
SmoI	CTYRAG	2 cut(s)	149, 268
Sse9I	AATT	3 cut(s)	41, 128, 493
SsiI	CCGC	3 cut(s)	861, 872, 874
SspMI	CTAG	6 cut(s)	306, 525, 612, 699, 783, 851
StyI	CCWWGG	2 cut(s)	368, 971
TaaI	ACNGT	3 cut(s)	97, 502, 981
TaiI	ACGT	2 cut(s)	518, 808
TaqI	TCGA	8 cut(s)	269, 317, 333, 588, 675, 721, 759, 846
TasI	AATT	3 cut(s)	41, 128, 493
TauI	GCSGC	1 cut(s)	874
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	4 cut(s)	150, 428, 465, 504
Tru9I	TTAA	4 cut(s)	150, 428, 465, 504
TscAI	CASTG	2 cut(s)	399, 423
TseFI	GTSAC	3 cut(s)	533, 620, 707
Tsp45I	GTSAC	3 cut(s)	533, 620, 707
TspDTI	ATGAA	3 cut(s)	25, 105, 174
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	399, 423
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	2 cut(s)	128, 493
XhoI	CTCGAG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	6 cut(s)	306, 525, 612, 699, 783, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.