Rh3AG078900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005149
Physical Location & Seq
Reverse (-)
6255507 .. 6263764
8258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG078900.1

Sequence Viewer

Length: 3009 bp
ATGGGTATCATATCCAGGACGATTTTCCCAGCATGTGGGAACATGTGTGTATGCTGCCCTGCTATGAGGTCAAGATCTAGACAACCTGTTAAGCGTTACAAAAAACTGCTTGCAGAAATCTTTCCCAAGTCTCCTGATGGCCCTCCCAATGAAAGGAAAATTGTTAAGTTATGCGAATATGCTGCAAAGAATCCTTTTAGAATCCCTAAGATTGCCAAACATCTTGAAGATAGGTGTTACAAAGAGCTGCGACTTGAGCATGTCAAATTCATCAATATTGTTGCAGAGGCCTACAACAAGTTACTTTGCCTCTGTAAGGACCAGATGGCTTATTTTGCTGTCAGTGTGCTAAACGTAGTCACTGAGCTTCTGGACAACTCTAAGCAAGACGCTCTCCGTATAATTGGATGCCAAACTCTGACGAGGTTCATCTACACTCAGGCAGATGGAACTTATACACACAACATTGAGAGTTTGGTTCACAAAGTATGTAAGTTGGCACATGAGAGTGGTGAAGACCATCAAAAGCGCTGCCTGAGAGCATCAAGTTTGCAGTGCCTTTCAGCCATGGTCCAATTCATGACTGAATTTTCATATATTTTTGTTGATTTTGATGAGATTGTACATGCTACTTTGGATAACTATGAGCCTGATGCAAATGATGATGATGATGAGGGAGCGGAGTCGCATCATAATTGGGTGGATGAAGTAGTTCGAAGTGAAGGTAGAGTTGGTGCAATTGCCGGTGGGTATTCTAGCCCTAGTTGTAAGGTCATCAGGCCACGGCCAGAAAAAAAGGATCCTTCTCTTCTCACAAGAGAAGAGACAGAGACGCCAAACATTTGGGCTCAAATTTGTATCCAGAGAATGATTGAATTAGCCAAGGAGAGCACAACAATGCGCCGGGTATTGGATCCAATGTTTGTCTACTTTGACTCCAGGCACCATTGGGTTCCTCGACAAGGGTTGGCTTTGTCAGTTTTGTCTGATATGTCATACTTTTTGGAGACTTCAGGAAATCAGCAGATGATTTTAGCCTATGCAATCCGTCATCTTGACCACAAAAACGTTTCACATGATCCACAACTCAAATCTCAGATCATTCAAGTTGCTAGTGCTTTGGCAAGCCAAATTCGATCCGGAACTGTGCTAGAAGAAATTGGTTTTGTCTCTGACCTATGCAGGCATTTGAGGAAGAGTCTTCAAGCTACTGTTGAATCAGTTGGAGAGCAAGAGTCTAACATTAATACCATGCTACAGAGTTCCATTGAAGATTGCTTATTAGAAATTGCTAGAGGGATTGGAAATATAAGACCATTGTTTGACATGATGTCTATATCTCTGGAGAAGCTTCCATCTGGAACTGTTGCCAGGGCGACCATGGGATCATTGATGATTGTTGCTCACATGATCTCACTAGCATTGATCTCTTCACATTCACAGCAGGTTTTTCCTGAATCCCTTCTTGTCCAGCTTTTGAAAGTGATGATGCATCCAGATGTTGAGGTGCGTGTTGGAGCACACCAGATATTTTCTGTTCTTCTCATTCCATGTTCTAATCGGCCCCGACATGAAGTTGCTCCTCTACAATCTGGTTATGTATACCAGTCAAGAAAAGGGAATTCAAATACAGCATCTATTGCTTCAATTACAGCTAGACTTGAAAAGCTTAGGAGGGAAAAAGATGGCCCCAAAGCAGAAAATCAGGAGACTGATGCTCGTGATGATTTTAAAGATAGAGATACTGCAGAAGAAGATTGCAAGCAAGGGCATACCCACAAGAGCTCCCCGAACTTCTATAAAATTAGCTCTATTATTGACAAGACTGCTGGGTCAAGCCTAACAGAGCCTGAACCGTACGTAATGAAGTTTAGTGAGGATCAAATAGCAGACTTGTTGTCTGCTTTTTGGATACAAGCCAATCTCCCAGATAATTTGCCTTCAAATATTGAAGCTATAGCTCATTCTTTCATTTTGATGATAGTTTCTTCTCATTTGAAGAATCCAAATGGCAACCTTATGGTTCGTTCCTTTCAACTTCTGCTATCTCTGAGGAATATCTCCCTTGATCCTAACAATGGGATGTTGCCTCCAGCTTGCCAGAGATCTATCCTTGTACTATCGATTGGCCTGTTGATGTTTTCTGCTCAGATCTATCACATTCCTAATCTAAATAATCTGCTCAAATCATTAATACCATCTGATGTTGATCCATATTTGGGAATCAGTGATGACCTTCAAGTTTTTCTGAGGCCTGAGGCAGACGTCACAAAATATGGATCTGTTATCGATAACCAGCTAGCTTCATCATTACTATTTGATTTGCGGAAAAAATTATATGAATCTGACGATGTCATAAGGGAAATCTTAGTTCAATTTCTATCAGACATTACTGAGATGGAGGCAGAGGCTGTGGCTAACCAACTTTTGGAGTCATTCGTACCTGATGATGCGTTCATGTTTGGTCCACAATCAATGCTTGACTTTGATGAAAATCAAATGCCAGGCCATTCGAAAGAATCACTTTCCTTTGATGGGGAATTTCCGACAAATTCATCAGTTGAGGATGATGCAACAAGTGAAGCATCAGTTGTTGCTGATTTCTCCCGGTTCATTCCTAGAGTCCCTTCATCCTCTTCTGTCTCCCATGTTATCAGTGTTGGACAGCTTCTGGAATCAGCACTTGAGGTTGCTGGTCAAGTAGCAGGAACATCTGTATCTACATCACCCCTCCCGTACAACACCATGGCAAGACACTGTGAAGCCCTTGGCACAGGCACAAGGAAGAAGCTTTCTAATTGGTTGGCCCATGAACATCATCAAAGCAACACTGTCCGTGACATTTTGTCTCCACCATTTCTTGTGGGTGGATGCCCAGCACTCCAGAAGTTAATTAATGAACCTGGCGTAACCCGGGGAGCTGCATCGGCACAGGACTCGTGGTTAGCTGCTATCAGGTTGCCTCCTGCTAGTCCGTTTGACAACTTCCTCAAGGCAGCTGGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1002

Amino Acids

111.52

Weight (kDa)

5.74

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 65 - 159 1.9e-21 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1831
AatII GACGTC 1 cut(s) 2268
Acc36I ACCTGC 1 cut(s) 1435
AccB1I GGYRCC 1 cut(s) 942
AccB7I CCANNNNNTGG 2 cut(s) 35, 2428
AccBSI CCGCTC 1 cut(s) 680
AccI GTMKAC 2 cut(s) 927, 1602
AccIII TCCGGA 1 cut(s) 1139
AciI CCGC 2 cut(s) 680, 2326
AclI AACGTT 1 cut(s) 1068
AcoI YGGCCR 1 cut(s) 785
AcsI RAATTY 7 cut(s) 266, 587, 852, 1131, 1621, 2540, 2551
AcuI CTGAAG 1 cut(s) 996
AcyI GRCGYC 2 cut(s) 833, 2265
AfaI GTAC 5 cut(s) 624, 1859, 2118, 2442, 2738
AfeI AGCGCT 1 cut(s) 530
AfiI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 910, 962, 2078, 2219, 2428, 2535
AflIII ACRYGT 1 cut(s) 42
AhdI GACNNNNNGTC 3 cut(s) 1330, 1897, 2845
AjnI CCWGG 5 cut(s) 14, 938, 1370, 2503, 2902
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
Alw21I GWGCWC 3 cut(s) 893, 1522, 1787
Alw26I GTCTC 8 cut(s) 135, 818, 824, 1001, 1174, 1703, 2647, 2853
AlwNI CAGNNNCTG 3 cut(s) 1850, 2411, 2671
Ama87I CYCGRG 1 cut(s) 2913
Aor13HI TCCGGA 1 cut(s) 1139
Aor51HI AGCGCT 1 cut(s) 530
ApeKI GCWGC 7 cut(s) 54, 182, 247, 531, 2921, 2948, 2996
ApoI RAATTY 7 cut(s) 266, 587, 852, 1131, 1621, 2540, 2551
AseI ATTAAT 3 cut(s) 1245, 2192, 2895
Asp700I GAANNNNTTC 3 cut(s) 120, 711, 1461
AspLEI GCGC 2 cut(s) 531, 903
AspS9I GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
AsuC2I CCSGG 4 cut(s) 905, 2608, 2914, 2915
AsuHPI GGTGA 2 cut(s) 524, 2718
AsuII TTCGAA 2 cut(s) 715, 2513
AsuNHI GCTAGC 1 cut(s) 2299
AvaI CYCGRG 1 cut(s) 2913
AvaII GGWCC 3 cut(s) 319, 571, 2465
AxyI CCTNAGG 1 cut(s) 2256
BaeI ACNNNNGTAYC 2 cut(s) 2700, 2733
BamHI GGATCC 2 cut(s) 799, 913
BanI GGYRCC 1 cut(s) 942
BanII GRGCYC 2 cut(s) 850, 1787
BauI CACGAG 2 cut(s) 1719, 2938
BbsI GAAGAC 2 cut(s) 522, 1193
Bbv12I GWGCWC 3 cut(s) 893, 1522, 1787
BbvI GCAGC 6 cut(s) 41, 169, 234, 518, 2908, 2935
BccI CCATC 9 cut(s) 131, 319, 440, 528, 1363, 1679, 2206, 2392, 2528
BceAI ACGGC 1 cut(s) 800
BcgI CGANNNNNNTGC 4 cut(s) 164, 198, 2919, 2953
BciT130I CCWGG 5 cut(s) 16, 940, 1372, 2505, 2904
BciVI GTATCC 2 cut(s) 869, 1905
BcnI CCSGG 4 cut(s) 905, 2608, 2914, 2915
BcoDI GTCTC 8 cut(s) 135, 818, 824, 1001, 1174, 1703, 2647, 2853
BfmI CTRYAG 3 cut(s) 1256, 1746, 1956
BfoI RGCGCY 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 1435
BfuI GTATCC 2 cut(s) 869, 1905
BglII AGATCT 3 cut(s) 74, 2105, 2151
BisI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
BlsI GCNGC 7 cut(s) 56, 184, 249, 533, 2923, 2950, 2998
Bme1390I CCNGG 9 cut(s) 16, 905, 940, 1372, 2505, 2608, 2904, 2914, 2915
Bme18I GGWCC 3 cut(s) 319, 571, 2465
BmeRI GACNNNNNGTC 3 cut(s) 1330, 1897, 2845
BmeT110I CYCGRG 1 cut(s) 2913
BmgT120I GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
BmiI GGNNCC 6 cut(s) 801, 915, 944, 954, 1565, 1690
BmrFI CCNGG 9 cut(s) 16, 905, 940, 1372, 2505, 2608, 2904, 2914, 2915
BmtI GCTAGC 1 cut(s) 2303
BpiI GAAGAC 2 cut(s) 522, 1193
BpmI CTGGAG 4 cut(s) 922, 1364, 2076, 2867
Bpu10I CCTNAGC 1 cut(s) 1670
Bpu14I TTCGAA 2 cut(s) 715, 2513
BpuEI CTTGAG 3 cut(s) 275, 2705, 2975
BpuMI CCSGG 4 cut(s) 905, 2608, 2914, 2915
Bsa29I ATCGAT 2 cut(s) 2123, 2289
BsaAI YACGTR 1 cut(s) 1861
BsaBI GATNNNNATC 2 cut(s) 2208, 2493
BsaHI GRCGYC 2 cut(s) 833, 2265
BsaJI CCNNGG 9 cut(s) 567, 782, 882, 1371, 1380, 2745, 2767, 2913, 2914
BsaWI WCCGGW 1 cut(s) 1139
BsaXI ACNNNNNCTCC 4 cut(s) 920, 950, 1769, 1799
Bsc4I CCNNNNNNNGG 9 cut(s) 35, 153, 316, 910, 962, 2078, 2219, 2428, 2535
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 1 cut(s) 1606
Bse21I CCTNAGG 1 cut(s) 2256
Bse8I GATNNNNATC 2 cut(s) 2208, 2493
BseAI TCCGGA 1 cut(s) 1139
BseBI CCWGG 5 cut(s) 16, 940, 1372, 2505, 2904
BseCI ATCGAT 2 cut(s) 2123, 2289
BseDI CCNNGG 9 cut(s) 567, 782, 882, 1371, 1380, 2745, 2767, 2913, 2914
BseGI GGATG 7 cut(s) 413, 709, 1492, 2088, 2572, 2630, 2876
BseJI GATNNNNATC 2 cut(s) 2208, 2493
BseLI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 910, 962, 2078, 2219, 2428, 2535
BseMII CTCAG 9 cut(s) 354, 452, 527, 1109, 2042, 2162, 2240, 2247, 2385
BseNI ACTGG 1 cut(s) 1606
BseRI GAGGAG 1 cut(s) 1572
BseXI GCAGC 6 cut(s) 41, 169, 234, 518, 2908, 2935
BseYI CCCAGC 3 cut(s) 28, 1829, 2875
BshNI GGYRCC 1 cut(s) 942
BshVI ATCGAT 2 cut(s) 2123, 2289
BsiHKAI GWGCWC 3 cut(s) 893, 1522, 1787
BsiHKCI CYCGRG 1 cut(s) 2913
BsiSI CCGG 5 cut(s) 744, 904, 1140, 2608, 2914
BsiWI CGTACG 1 cut(s) 1857
BslFI GGGAC 1 cut(s) 2609
BslI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 910, 962, 2078, 2219, 2428, 2535
BsmAI GTCTC 8 cut(s) 135, 818, 824, 1001, 1174, 1703, 2647, 2853
BsmBI CGTCTC 1 cut(s) 824
BsmFI GGGAC 1 cut(s) 2609
BsoBI CYCGRG 1 cut(s) 2913
Bsp119I TTCGAA 2 cut(s) 715, 2513
Bsp1286I GDGCHC 4 cut(s) 850, 893, 1522, 1787
Bsp13I TCCGGA 1 cut(s) 1139
Bsp1407I TGTACA 1 cut(s) 622
Bsp19I CCATGG 3 cut(s) 567, 1380, 2745
BspACI CCGC 2 cut(s) 680, 2326
BspCNI CTCAG 9 cut(s) 355, 451, 528, 1108, 2043, 2161, 2241, 2248, 2386
BspDI ATCGAT 2 cut(s) 2123, 2289
BspEI TCCGGA 1 cut(s) 1139
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 6 cut(s) 801, 915, 944, 954, 1565, 1690
BspMAI CTGCAG 1 cut(s) 1750
BspMI ACCTGC 1 cut(s) 1435
BspOI GCTAGC 1 cut(s) 2303
BspT104I TTCGAA 2 cut(s) 715, 2513
BspT107I GGYRCC 1 cut(s) 942
BsrBI CCGCTC 1 cut(s) 680
BsrFI RCCGGY 1 cut(s) 743
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 1 cut(s) 1606
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 9 cut(s) 567, 782, 882, 1371, 1380, 2745, 2767, 2913, 2914
BssNAI GTATAC 1 cut(s) 1603
BssNI GRCGYC 2 cut(s) 833, 2265
BssSI CACGAG 2 cut(s) 1719, 2938
BssT1I CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
Bst1107I GTATAC 1 cut(s) 1603
Bst2BI CACGAG 2 cut(s) 1719, 2938
Bst2UI CCWGG 5 cut(s) 16, 940, 1372, 2505, 2904
Bst4CI ACNGT 6 cut(s) 1147, 1213, 1366, 1857, 2759, 2833
Bst6I CTCTTC 5 cut(s) 813, 816, 1190, 1435, 2641
BstACI GRCGYC 2 cut(s) 833, 2265
BstAPI GCANNNNNTGC 1 cut(s) 1640
BstAUI TGTACA 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 1861
BstBI TTCGAA 2 cut(s) 715, 2513
BstC8I GCNNGC 6 cut(s) 111, 1126, 1184, 1763, 2098, 2301
BstDSI CCRYGG 4 cut(s) 567, 782, 1380, 2745
BstENI CCTNNNNNAGG 2 cut(s) 314, 960
BstF5I GGATG 7 cut(s) 413, 709, 1492, 2088, 2572, 2630, 2876
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 2 cut(s) 531, 903
BstMAI GTCTC 8 cut(s) 135, 818, 824, 1001, 1174, 1703, 2647, 2853
BstMWI GCNNNNNNNGC 4 cut(s) 256, 335, 1640, 2927
BstNI CCWGG 5 cut(s) 16, 940, 1372, 2505, 2904
BstNSI RCATGY 4 cut(s) 36, 46, 263, 629
BstSCI CCNGG 9 cut(s) 14, 903, 938, 1370, 2503, 2606, 2902, 2912, 2913
BstSFI CTRYAG 3 cut(s) 1256, 1746, 1956
BstSNI TACGTA 1 cut(s) 1861
BstV1I GCAGC 6 cut(s) 41, 169, 234, 518, 2908, 2935
BstV2I GAAGAC 2 cut(s) 522, 1193
BstX2I RGATCY 6 cut(s) 74, 799, 913, 2105, 2151, 2279
BstXI CCANNNNNNTGG 1 cut(s) 843
BstYI RGATCY 6 cut(s) 74, 799, 913, 2105, 2151, 2279
BstZ17I GTATAC 1 cut(s) 1603
Bsu15I ATCGAT 2 cut(s) 2123, 2289
Bsu36I CCTNAGG 1 cut(s) 2256
BsuI GTATCC 2 cut(s) 869, 1905
BsuTUI ATCGAT 2 cut(s) 2123, 2289
BtgI CCRYGG 4 cut(s) 567, 782, 1380, 2745
BtsCI GGATG 7 cut(s) 413, 709, 1492, 2088, 2572, 2630, 2876
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 7 cut(s) 349, 360, 560, 2233, 2662, 2755, 2829
BveI ACCTGC 1 cut(s) 1435
Cac8I GCNNGC 6 cut(s) 111, 1126, 1184, 1763, 2098, 2301
CaiI CAGNNNCTG 3 cut(s) 1850, 2411, 2671
CciI TCATGA 1 cut(s) 579
CfoI GCGC 2 cut(s) 531, 903
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
Cfr9I CCCGGG 1 cut(s) 2913
ClaI ATCGAT 2 cut(s) 2123, 2289
CseI GACGC 2 cut(s) 398, 841
Csp6I GTAC 5 cut(s) 623, 1858, 2117, 2441, 2737
CviQI GTAC 5 cut(s) 623, 1858, 2117, 2441, 2737
DraI TTTAAA 1 cut(s) 1732
DrdI GACNNNNNNGTC 1 cut(s) 1831
DriI GACNNNNNGTC 3 cut(s) 1330, 1897, 2845
DseDI GACNNNNNNGTC 1 cut(s) 1831
EaeI YGGCCR 1 cut(s) 785
Eam1104I CTCTTC 5 cut(s) 813, 816, 1190, 1435, 2641
Eam1105I GACNNNNNGTC 3 cut(s) 1330, 1897, 2845
EarI CTCTTC 5 cut(s) 813, 816, 1190, 1435, 2641
Ecl136II GAGCTC 1 cut(s) 1785
Eco105I TACGTA 1 cut(s) 1861
Eco130I CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
Eco147I AGGCCT 2 cut(s) 290, 2254
Eco24I GRGCYC 2 cut(s) 850, 1787
Eco47I GGWCC 3 cut(s) 319, 571, 2465
Eco47III AGCGCT 1 cut(s) 530
Eco53kI GAGCTC 1 cut(s) 1785
Eco57I CTGAAG 1 cut(s) 996
Eco81I CCTNAGG 1 cut(s) 2256
Eco88I CYCGRG 1 cut(s) 2913
EcoICRI GAGCTC 1 cut(s) 1785
EcoNI CCTNNNNNAGG 2 cut(s) 314, 960
EcoRI GAATTC 1 cut(s) 1621
EcoRII CCWGG 5 cut(s) 14, 938, 1370, 2503, 2902
EcoT14I CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
EcoT22I ATGCAT 1 cut(s) 1494
EcoT38I GRGCYC 2 cut(s) 850, 1787
ErhI CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
Esp3I CGTCTC 1 cut(s) 824
FalI AAGNNNNNCTT 2 cut(s) 2508, 2540
FaqI GGGAC 1 cut(s) 2609
FblI GTMKAC 2 cut(s) 927, 1602
Fnu4HI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
FokI GGATG 7 cut(s) 420, 716, 1479, 2095, 2579, 2617, 2883
FriOI GRGCYC 2 cut(s) 850, 1787
Fsp4HI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
GlaI GCGC 2 cut(s) 530, 902
GluI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
GsaI CCCAGC 3 cut(s) 32, 1833, 2879
GsuI CTGGAG 4 cut(s) 922, 1364, 2076, 2867
HaeII RGCGCY 1 cut(s) 532
HapII CCGG 5 cut(s) 744, 904, 1140, 2608, 2914
HgaI GACGC 2 cut(s) 398, 841
HhaI GCGC 2 cut(s) 531, 903
Hin1I GRCGYC 2 cut(s) 833, 2265
Hin6I GCGC 2 cut(s) 529, 901
HinP1I GCGC 2 cut(s) 529, 901
HindIII AAGCTT 3 cut(s) 1349, 1667, 2789
HpaII CCGG 5 cut(s) 744, 904, 1140, 2608, 2914
HphI GGTGA 2 cut(s) 524, 2718
Hpy166II GTNNAC 4 cut(s) 481, 928, 1603, 2468
Hpy8I GTNNAC 4 cut(s) 481, 928, 1603, 2468
HpyAV CCTTC 6 cut(s) 716, 813, 1472, 1950, 2246, 2637
HpyCH4III ACNGT 6 cut(s) 1147, 1213, 1366, 1857, 2759, 2833
HpyCH4IV ACGT 4 cut(s) 354, 1068, 1860, 2265
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 335, 1640, 2927
HpySE526I ACGT 4 cut(s) 354, 1068, 1860, 2265
Hsp92I GRCGYC 2 cut(s) 833, 2265
HspAI GCGC 2 cut(s) 529, 901
Kpn2I TCCGGA 1 cut(s) 1139
LmnI GCTCC 5 cut(s) 677, 1517, 1585, 1790, 2918
Lsp1109I GCAGC 6 cut(s) 41, 169, 234, 518, 2908, 2935
MaeII ACGT 4 cut(s) 354, 1068, 1860, 2265
MaeIII GTNAC 7 cut(s) 95, 236, 300, 358, 2266, 2837, 2908
MbiI CCGCTC 1 cut(s) 680
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 6 cut(s) 74, 799, 913, 2105, 2151, 2279
MhlI GDGCHC 4 cut(s) 850, 893, 1522, 1787
MlyI GAGTC 7 cut(s) 692, 929, 1207, 1244, 2441, 2631, 2930
MmeI TCCRAC 4 cut(s) 1204, 1495, 2570, 2641
Mph1103I ATGCAT 1 cut(s) 1494
MroI TCCGGA 1 cut(s) 1139
MroXI GAANNNNTTC 3 cut(s) 120, 711, 1461
MseI TTAA 7 cut(s) 90, 165, 1245, 1731, 2192, 2891, 2895
MslI CAYNNNNRTG 4 cut(s) 507, 896, 1497, 1976
MspA1I CMGCKG 1 cut(s) 2999
MspI CCGG 5 cut(s) 744, 904, 1140, 2608, 2914
MspR9I CCNGG 9 cut(s) 16, 905, 940, 1372, 2505, 2608, 2904, 2914, 2915
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 5 cut(s) 16, 940, 1372, 2505, 2904
MwoI GCNNNNNNNGC 4 cut(s) 256, 335, 1640, 2927
NciI CCSGG 4 cut(s) 905, 2608, 2914, 2915
NcoI CCATGG 3 cut(s) 567, 1380, 2745
NheI GCTAGC 1 cut(s) 2299
NlaIV GGNNCC 6 cut(s) 801, 915, 944, 954, 1565, 1690
NmuCI GTSAC 3 cut(s) 358, 2266, 2837
NsiI ATGCAT 1 cut(s) 1494
NspI RCATGY 4 cut(s) 36, 46, 263, 629
NspV TTCGAA 2 cut(s) 715, 2513
PacI TTAATTAA 1 cut(s) 2895
PagI TCATGA 1 cut(s) 579
PceI AGGCCT 2 cut(s) 290, 2254
PciI ACATGT 1 cut(s) 42
PdmI GAANNNNTTC 3 cut(s) 120, 711, 1461
PfeI GAWTC 9 cut(s) 190, 201, 1217, 1457, 2002, 2223, 2342, 2519, 2675
Pfl23II CGTACG 1 cut(s) 1857
PflFI GACNNNGTC 1 cut(s) 2351
PflMI CCANNNNNTGG 2 cut(s) 35, 2428
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 7 cut(s) 56, 184, 249, 533, 2923, 2950, 2998
PleI GAGTC 7 cut(s) 691, 929, 1206, 1243, 2440, 2630, 2930
PpsI GAGTC 7 cut(s) 691, 929, 1206, 1243, 2440, 2630, 2930
Ppu21I YACGTR 1 cut(s) 1861
PscI ACATGT 1 cut(s) 42
PshBI ATTAAT 3 cut(s) 1245, 2192, 2895
Psp124BI GAGCTC 1 cut(s) 1787
Psp1406I AACGTT 1 cut(s) 1068
Psp6I CCWGG 5 cut(s) 14, 938, 1370, 2503, 2902
PspFI CCCAGC 3 cut(s) 28, 1829, 2875
PspGI CCWGG 5 cut(s) 14, 938, 1370, 2503, 2902
PspLI CGTACG 1 cut(s) 1857
PspN4I GGNNCC 6 cut(s) 801, 915, 944, 954, 1565, 1690
PspPI GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
PstI CTGCAG 1 cut(s) 1750
PstNI CAGNNNCTG 3 cut(s) 1850, 2411, 2671
PsuI RGATCY 6 cut(s) 74, 799, 913, 2105, 2151, 2279
PsyI GACNNNGTC 1 cut(s) 2351
PvuII CAGCTG 1 cut(s) 2999
RsaI GTAC 5 cut(s) 624, 1859, 2118, 2442, 2738
RsaNI GTAC 5 cut(s) 623, 1858, 2117, 2441, 2737
RseI CAYNNNNRTG 4 cut(s) 507, 896, 1497, 1976
SacI GAGCTC 1 cut(s) 1787
SaqAI TTAA 7 cut(s) 90, 165, 1245, 1731, 2192, 2891, 2895
SatI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
Sau96I GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
SchI GAGTC 7 cut(s) 692, 929, 1207, 1244, 2441, 2631, 2930
ScrFI CCNGG 9 cut(s) 16, 905, 940, 1372, 2505, 2608, 2904, 2914, 2915
SduI GDGCHC 4 cut(s) 850, 893, 1522, 1787
SfcI CTRYAG 3 cut(s) 1256, 1746, 1956
SfuI TTCGAA 2 cut(s) 715, 2513
SinI GGWCC 3 cut(s) 319, 571, 2465
SmaI CCCGGG 1 cut(s) 2915
SmiMI CAYNNNNRTG 4 cut(s) 507, 896, 1497, 1976
SmlI CTYRAG 3 cut(s) 254, 2684, 2990
SmoI CTYRAG 3 cut(s) 254, 2684, 2990
SnaBI TACGTA 1 cut(s) 1861
SseBI AGGCCT 2 cut(s) 290, 2254
SsiI CCGC 2 cut(s) 680, 2326
SspI AATATT 2 cut(s) 277, 1948
SstI GAGCTC 1 cut(s) 1787
StuI AGGCCT 2 cut(s) 290, 2254
StyD4I CCNGG 9 cut(s) 14, 903, 938, 1370, 2503, 2606, 2902, 2912, 2913
StyI CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
TaaI ACNGT 6 cut(s) 1147, 1213, 1366, 1857, 2759, 2833
TaiI ACGT 4 cut(s) 357, 1071, 1863, 2268
TaqI TCGA 6 cut(s) 715, 958, 1135, 2123, 2289, 2513
TatI WGTACW 2 cut(s) 622, 2116
TfiI GAWTC 9 cut(s) 190, 201, 1217, 1457, 2002, 2223, 2342, 2519, 2675
Tru1I TTAA 7 cut(s) 90, 165, 1245, 1731, 2192, 2891, 2895
Tru9I TTAA 7 cut(s) 90, 165, 1245, 1731, 2192, 2891, 2895
TscAI CASTG 7 cut(s) 349, 367, 560, 2233, 2662, 2762, 2836
TseFI GTSAC 3 cut(s) 358, 2266, 2837
TseI GCWGC 7 cut(s) 54, 182, 247, 531, 2921, 2948, 2996
Tsp45I GTSAC 3 cut(s) 358, 2266, 2837
TspGWI ACGGA 4 cut(s) 386, 1037, 2825, 2964
TspMI CCCGGG 1 cut(s) 2913
TspRI CASTG 7 cut(s) 349, 367, 560, 2233, 2662, 2762, 2836
Tth111I GACNNNGTC 1 cut(s) 2351
Van91I CCANNNNNTGG 2 cut(s) 35, 2428
VpaK11BI GGWCC 3 cut(s) 319, 571, 2465
VspI ATTAAT 3 cut(s) 1245, 2192, 2895
XagI CCTNNNNNAGG 2 cut(s) 314, 960
XapI RAATTY 7 cut(s) 266, 587, 852, 1131, 1621, 2540, 2551
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 4 cut(s) 36, 46, 263, 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 1378
XmaI CCCGGG 1 cut(s) 2913
XmiI GTMKAC 2 cut(s) 927, 1602
XmnI GAANNNNTTC 3 cut(s) 120, 711, 1461
ZraI GACGTC 1 cut(s) 2266
Zsp2I ATGCAT 1 cut(s) 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.