Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005149

Physical Location & Seq

Genomic Coordinates Reverse (-)

1507544 .. 1509427

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0019100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGGTTGCTTTCCAGCTTGTTTCACTTCTTCTAATAGCCGAAAGCACCGAAAATCAGTAGCTGTAACTCCCTGTATACAAAACCAAGACCAAATCGTTGAAGCTACCGAAGAAGAAGCTGTTCTATTTGAACCCACAAAGCTAGATGACATTATCAAACCCATTAATCCCATTACAGAATCCAAAGAGGTTATTGAAGAACAAACCAAGAATGATGTTAAAAGGAAAGTGACATTTGATTTGGAGGAAGAAGGCATTGCTGAGAAACAGAATGAAAATAAAGAGGAAACACCAAAAGAGATTGAACCAATTTTGGGTTCTATTGGATCAAGTGTAGTTACTGTGGTACCATCTTATCCATCGAATCATAGGTATGAAAATTGCTCAAACAGTGAGGATGAAGATGAAGGTGTAATAGATTTATCAGGAAGTGATTTGAATGGAGATGATTCTGGTGAGAGTGTTGATGATGAGGTTGAGAGCAATAAGCAAAGTGTGATTCAAGAACAAGAGTCTTCAGAATCTTTGTTTTCGATATCAATTGATTCGAGGACTAAGCAAAGTGATGCTGAAGAAGATGAGAAGGAGGTGAATAGTCCAATGCCAAAACCAAAGCCAATTGAATCAGACCAGAGTGGTAGAGATAATAGTAATAGGAGTCAGCATTGCCATTCAGTGTTGAGCCCCATAGAGAATCTTAGTCAATGGAAGGAGGTAAAAGCGAAAGCAATTCCTTTAGCTTCGAATCACCAAGAGAAGGAGAATATGAATGCTGAGCAAGATTTCAACATACCAATTAGTCCAGAGCCTACACTGAAGCTGTCAAAACACTTCAGAAGAAGACCACTTGGGTGCAATGACCTAAAGCTTGTTGACCAAGAAAATGGGGTTGACACTAGCCTTTCGAGCTGGTTGGTTGAATGTGAAACCACACCCAAGTCGAATGCTAGTGAAAATTCTGTCGGGAACTTGATGTGTGAGGGAGTGAGTTCATCAAGAAGACTCGGAGATAGACCAATTTTAGGAGCATGGACTAGTGAAGAGCTTAAGCAGTTGTCTAATTCTTCTACTCTAAACCAGTCGCGAAGCCCGAGTCCTGATCAAATACCGATCATAGGGACTGTAGGGAGCTACTGGAGTCACACTGGTCAGGCCACGAATTCAGACTCAAACTCTTCCAGCAGAGGAATGGAAAACAAAGCAGGGAGGAACAGAGAGGATGAGAAAGTGAAATGGAAGACTATACCATTCGAGGCAAAATTGGAGAGAGTTTTAGATATGGGCATACTTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

432

Amino Acids

47.84

Weight (kDa)

4.7

Isoelectric Point (pI)

62.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26850 AT5G26850 AT5G26850 AT5G26850
fragaria_vesca	FvH4_6g07470 FvH4_6g07470 FvH4_6g07470
malus_domestica	MD04G1215200.v1.1 MD12G1205600.v1.1
prunus_persica	Prupe.6G312700_v2.0.a1 Prupe.6G312700_v2.0.a1 Prupe.6G312700_v2.0.a1
pyrus_communis	pycom04g17060 pycom12g19350 pycom12g19360 pycom13g28880
rosa_chinensis	RchiOBHm_Chr3g0457131
rosa_laevigata	RLG00000025246
rosa_roxburghii	Rroxscaffold_6G00422160
rosa_rugosa	Rorug03G0018800 Rorug03G0018900 Rorug03G0019000 Rorug03G0019100 Rorug03G0019100 Rorug03G0019200
rosa_samantha	Rh3AG078900 Rh3BG080600 Rh3CG080700 Rh3DG082500
rosa_wichuraiana	Rw3G006770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	76
AccII	CGCG	1 cut(s)	1084
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	2 cut(s)	955, 1159
AcuI	CTGAAG	4 cut(s)	501, 591, 817, 836
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	4 cut(s)	314, 757, 1022, 1115
AflII	CTTAAG	1 cut(s)	1046
AgsI	TTSAA	9 cut(s)	101, 131, 197, 305, 439, 503, 623, 787, 920
AhlI	ACTAGT	1 cut(s)	1034
AjuI	GAANNNNNNNTTGG	2 cut(s)	301, 333
AleI	CACNNNNGTG	1 cut(s)	850
AlwI	GGATC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	1090
AoxI	GGCC	1 cut(s)	1152
ApoI	RAATTY	2 cut(s)	955, 1159
ArsI	GACNNNNNNTTYG	4 cut(s)	223, 255, 1078, 1110
AseI	ATTAAT	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	120
Asp718I	GGTACC	1 cut(s)	346
AsuHPI	GGTGA	3 cut(s)	467, 601, 740
AsuII	TTCGAA	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	1090
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BanI	GGYRCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	686
BbsI	GAAGAC	4 cut(s)	507, 847, 1006, 1244
BccI	CCATC	2 cut(s)	358, 367
BclI	TGATCA	1 cut(s)	1099
BcuI	ACTAGT	1 cut(s)	1034
BfaI	CTAG	4 cut(s)	143, 897, 948, 1035
BfmI	CTRYAG	1 cut(s)	1122
BfrI	CTTAAG	1 cut(s)	1046
BlpI	GCTNAGC	1 cut(s)	774
BmeT110I	CYCGRG	1 cut(s)	1090
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	1 cut(s)	556
BpiI	GAAGAC	4 cut(s)	507, 847, 1006, 1244
BpmI	CTGGAG	1 cut(s)	1156
Bpu1102I	GCTNAGC	1 cut(s)	774
Bpu14I	TTCGAA	1 cut(s)	743
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 757, 1022, 1115
Bse1I	ACTGG	3 cut(s)	1078, 1139, 1150
Bse3DI	GCAATG	3 cut(s)	255, 664, 862
BseGI	GGATG	2 cut(s)	403, 1225
BseLI	CCNNNNNNNGG	4 cut(s)	314, 757, 1022, 1115
BseMI	GCAATG	3 cut(s)	255, 664, 862
BseMII	CTCAG	2 cut(s)	252, 765
BseNI	ACTGG	3 cut(s)	1078, 1139, 1150
Bsh1236I	CGCG	1 cut(s)	1084
BshFI	GGCC	1 cut(s)	1154
BshNI	GGYRCC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	1090
BslFI	GGGAC	1 cut(s)	1132
BslI	CCNNNNNNNGG	4 cut(s)	314, 757, 1022, 1115
BsmFI	GGGAC	1 cut(s)	1132
BsmI	GAATGC	2 cut(s)	775, 949
BsnI	GGCC	1 cut(s)	1154
BsoBI	CYCGRG	1 cut(s)	1090
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp143I	GATC	3 cut(s)	326, 1099, 1110
Bsp1720I	GCTNAGC	1 cut(s)	774
Bsp68I	TCGCGA	1 cut(s)	1084
BspANI	GGCC	1 cut(s)	1154
BspCNI	CTCAG	2 cut(s)	253, 766
BspFNI	CGCG	1 cut(s)	1084
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	334
BspQI	GCTCTTC	1 cut(s)	1035
BspT104I	TTCGAA	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	346
BspTI	CTTAAG	1 cut(s)	1046
BsrDI	GCAATG	3 cut(s)	255, 664, 862
BsrI	ACTGG	3 cut(s)	1078, 1139, 1150
BssMI	GATC	3 cut(s)	326, 1099, 1110
BssNAI	GTATAC	1 cut(s)	77
Bst1107I	GTATAC	1 cut(s)	77
Bst4CI	ACNGT	3 cut(s)	343, 392, 1123
Bst6I	CTCTTC	2 cut(s)	1035, 1180
BstAFI	CTTAAG	1 cut(s)	1046
BstBI	TTCGAA	1 cut(s)	743
BstDEI	CTNAG	5 cut(s)	261, 555, 698, 774, 1296
BstF5I	GGATG	2 cut(s)	403, 1225
BstFNI	CGCG	1 cut(s)	1084
BstKTI	GATC	3 cut(s)	329, 1102, 1113
BstMBI	GATC	3 cut(s)	326, 1099, 1110
BstMWI	GCNNNNNNNGC	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	1122
BstUI	CGCG	1 cut(s)	1084
BstV2I	GAAGAC	4 cut(s)	507, 847, 1006, 1244
BstXI	CCANNNNNNTGG	1 cut(s)	884
BstZ17I	GTATAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	1154
BtsCI	GGATG	2 cut(s)	403, 1225
BtsIMutI	CAGTG	4 cut(s)	397, 681, 812, 1143
BtuMI	TCGCGA	1 cut(s)	1084
CaiI	CAGNNNCTG	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	1 cut(s)	1029
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	5 cut(s)	261, 555, 698, 774, 1296
DpnI	GATC	3 cut(s)	328, 1101, 1112
DpnII	GATC	3 cut(s)	326, 1099, 1110
Eam1104I	CTCTTC	2 cut(s)	1035, 1180
EarI	CTCTTC	2 cut(s)	1035, 1180
Eco24I	GRGCYC	1 cut(s)	686
Eco32I	GATATC	1 cut(s)	537
Eco57I	CTGAAG	4 cut(s)	501, 591, 817, 836
Eco88I	CYCGRG	1 cut(s)	1090
EcoRI	GAATTC	1 cut(s)	1159
EcoRV	GATATC	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	686
FaeI	CATG	1 cut(s)	1032
FaqI	GGGAC	1 cut(s)	1132
FatI	CATG	1 cut(s)	1028
FbaI	TGATCA	1 cut(s)	1099
FblI	GTMKAC	1 cut(s)	76
FokI	GGATG	2 cut(s)	410, 1232
FriOI	GRGCYC	1 cut(s)	686
FspBI	CTAG	4 cut(s)	143, 897, 948, 1035
GsuI	CTGGAG	1 cut(s)	1156
HaeIII	GGCC	1 cut(s)	1154
Hin1II	CATG	1 cut(s)	1032
HincII	GTYRAC	2 cut(s)	874, 892
HindII	GTYRAC	2 cut(s)	874, 892
HindIII	AAGCTT	1 cut(s)	866
HphI	GGTGA	3 cut(s)	467, 601, 740
Hpy166II	GTNNAC	3 cut(s)	77, 874, 892
Hpy188I	TCNGA	5 cut(s)	520, 628, 836, 1007, 1165
Hpy188III	TCNNGA	7 cut(s)	426, 503, 803, 964, 996, 1083, 1097
Hpy8I	GTNNAC	3 cut(s)	77, 874, 892
HpyAV	CCTTC	5 cut(s)	245, 401, 577, 703, 751
HpyCH4III	ACNGT	3 cut(s)	343, 392, 1123
HpyCH4V	TGCA	1 cut(s)	855
HpyF10VI	GCNNNNNNNGC	1 cut(s)	906
HpyF3I	CTNAG	5 cut(s)	261, 555, 698, 774, 1296
Hsp92II	CATG	1 cut(s)	1032
KpnI	GGTACC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	1099
Kzo9I	GATC	3 cut(s)	326, 1099, 1110
LguI	GCTCTTC	1 cut(s)	1035
LmnI	GCTCC	3 cut(s)	1025, 1128, 1292
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	4 cut(s)	143, 897, 948, 1035
MaeIII	GTNAC	4 cut(s)	64, 229, 337, 1139
MalI	GATC	3 cut(s)	328, 1101, 1112
MboI	GATC	3 cut(s)	326, 1099, 1110
MfeI	CAATTG	2 cut(s)	540, 618
MhlI	GDGCHC	1 cut(s)	686
MlyI	GAGTC	6 cut(s)	521, 667, 996, 1102, 1147, 1160
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	165, 219, 1047
MslI	CAYNNNNRTG	2 cut(s)	372, 850
MspCI	CTTAAG	1 cut(s)	1046
MunI	CAATTG	2 cut(s)	540, 618
Mva1269I	GAATGC	2 cut(s)	775, 949
MvnI	CGCG	1 cut(s)	1084
MwoI	GCNNNNNNNGC	1 cut(s)	906
NdeII	GATC	3 cut(s)	326, 1099, 1110
NlaIII	CATG	1 cut(s)	1032
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	229, 1139
NruI	TCGCGA	1 cut(s)	1084
NspV	TTCGAA	1 cut(s)	743
OliI	CACNNNNGTG	1 cut(s)	850
PciSI	GCTCTTC	1 cut(s)	1035
PcsI	WCGNNNNNNNCGW	1 cut(s)	1088
PctI	GAATGC	2 cut(s)	775, 949
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	9 cut(s)	179, 364, 449, 499, 521, 545, 623, 694, 745
PleI	GAGTC	6 cut(s)	520, 666, 996, 1101, 1146, 1160
PpsI	GAGTC	6 cut(s)	520, 666, 996, 1101, 1146, 1160
PshBI	ATTAAT	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	62
RruI	TCGCGA	1 cut(s)	1084
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	2 cut(s)	372, 850
SapI	GCTCTTC	1 cut(s)	1035
SaqAI	TTAA	3 cut(s)	165, 219, 1047
Sau3AI	GATC	3 cut(s)	326, 1099, 1110
SchI	GAGTC	6 cut(s)	521, 667, 996, 1102, 1147, 1160
SduI	GDGCHC	1 cut(s)	686
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	1122
SfuI	TTCGAA	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	372, 850
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
SpeI	ACTAGT	1 cut(s)	1034
SspMI	CTAG	4 cut(s)	143, 897, 948, 1035
TaaI	ACNGT	3 cut(s)	343, 392, 1123
TaqI	TCGA	7 cut(s)	362, 533, 548, 743, 905, 941, 1251
TfiI	GAWTC	9 cut(s)	179, 364, 449, 499, 521, 545, 623, 694, 745
Tru1I	TTAA	3 cut(s)	165, 219, 1047
Tru9I	TTAA	3 cut(s)	165, 219, 1047
TscAI	CASTG	4 cut(s)	397, 681, 819, 1150
TseFI	GTSAC	2 cut(s)	229, 1139
Tsp45I	GTSAC	2 cut(s)	229, 1139
TspDTI	ATGAA	6 cut(s)	288, 390, 414, 420, 782, 981
TspRI	CASTG	4 cut(s)	397, 681, 819, 1150
Vha464I	CTTAAG	1 cut(s)	1046
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	2 cut(s)	955, 1159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1186
XmiI	GTMKAC	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	4 cut(s)	143, 897, 948, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.