Rorug03G0019000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005149
Physical Location & Seq
Forward (+)
1503565 .. 1507564
4000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0019000.1

Sequence Viewer

Length: 1179 bp
ATGCTTTTTCAGGTGGGAGGCCAAGGGACTCGTCCCACCTTCTTCGAGATGGCCGCCGCTCAGCAGCTTCCGGCCAGCCTCCGCGCCGCCCTCACTTACTCCGTCGGCGTGTTGGCTTTGCGGAGACCATTTCTGCACAGGGTTCTGGACTATGAAGACGAGTTCTTTGCGTTCCTCATGCTGATTCTCGAGACTCACAGCTTGCGAACCACAGATGCTTCGTTTTCGGAATCTCTGTATGGACTTAGGAGGAGGGCTGTGAAGATAAAGGTGCAGAAGGACGATTCTCGGGTGAACTCAGGTGATGAATTTCATCATTCTGGGTTGGAAAGGAGACAGAAAGTTCTCTCAGTTGTGTTTTTGGTTGTATTGCCCTACTTCAAATCGAAATTGCACGCAATCTATAATAGGGAAAGGGAAGCGAGACTACAAGCAACTTTATGGGGAGATAGTGGTGAGAGATTTGACGACGCTGACATCATTGATAGGGGCGAGGGTTCTGTTGTTTCAAGAAGTTTGGATGTGGAAGCATCAGTTAGGACACGTTTGGCAAAGAAGATCCAGAAATTGATAGGTGCTTGCTACCCATGGCTGCATGCTAGTAGTGAAGGATTTTCATTTGCTTACCAGATGTTATACTTGTTGGATGCGACGGGATTTTATTCTTTAGGATTACATGCGCTTGGGATTCAAGTTTGTCGAGCTACTGGGCAAGAGCTGATGGATACTTCTTCGAGAATTTCAAAAACAAGAAGCCGTGAACGTGAGAGACTTCGTGGTCCTCCATGGTTGAAGGCGATACAAGGAGCGTTGCTCAGTGGTACATACACGGTCCTGGATTATGCGCAGACTGGTTTAATTGCAGCAGTATTCTTTTTTAAAATGATGGAATGGTGGTACCAATCTGCTGAAGAGAGAATGTCAGCTCCAACCATATACCCCCCACCTCCACCGCCTCCTTCTCCCCAGGTTGCCAAAGAGGGGATTCCACTGCCTTCCGATAGAACTCTTTGTCCTCTTTGTTCACAGAAACGCGCGAATCCATCTGTAATTACAGTTTCTGGGTTTGTCTTTTGCTATGCCTGCGTTTTCAAGTATGTTTCTCAGTATAAGCGGTGTCCGGTCACATTGATGCCTGCTAATGTCGACCAGATAAGAAGGCTCTTTCATGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

44.35

Weight (kDa)

9.3

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 21 - 302 3.2e-42 Pex2 / Pex12 amino terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 777
Acc16I TGCGCA 1 cut(s) 846
Acc65I GGTACC 1 cut(s) 897
AccB1I GGYRCC 1 cut(s) 897
AccBSI CCGCTC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 1146
AccII CGCG 3 cut(s) 84, 1035, 1037
AciI CCGC 7 cut(s) 54, 57, 82, 87, 121, 953, 1114
AclWI GGATC 1 cut(s) 553
AcoI YGGCCR 2 cut(s) 51, 72
AcsI RAATTY 2 cut(s) 308, 738
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 2 cut(s) 823, 899
AfiI CCNNNNNNNGG 1 cut(s) 981
AflIII ACRYGT 1 cut(s) 542
AgsI TTSAA 6 cut(s) 382, 510, 692, 744, 793, 1093
AjnI CCWGG 2 cut(s) 834, 966
AloI GAACNNNNNNTCC 2 cut(s) 997, 1029
AluBI AGCT 5 cut(s) 67, 201, 704, 718, 926
AluI AGCT 5 cut(s) 67, 201, 704, 718, 926
Alw26I GTCTC 5 cut(s) 118, 185, 328, 418, 763
AlwI GGATC 1 cut(s) 553
AlwNI CAGNNNCTG 1 cut(s) 1061
Ama87I CYCGRG 2 cut(s) 188, 288
AoxI GGCC 3 cut(s) 19, 51, 72
ApeKI GCWGC 3 cut(s) 64, 592, 863
ApoI RAATTY 2 cut(s) 308, 738
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp718I GGTACC 1 cut(s) 897
AspLEI GCGC 4 cut(s) 86, 682, 847, 1037
AspS9I GGNCC 2 cut(s) 779, 832
AsuHPI GGTGA 3 cut(s) 304, 314, 467
AvaI CYCGRG 2 cut(s) 188, 288
AvaII GGWCC 2 cut(s) 779, 832
BanI GGYRCC 1 cut(s) 897
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 76, 579, 875
BccI CCATC 4 cut(s) 43, 715, 880, 1051
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 2 cut(s) 836, 968
BciVI GTATCC 1 cut(s) 718
BcoDI GTCTC 5 cut(s) 118, 185, 328, 418, 763
BfaI CTAG 1 cut(s) 600
BfuI GTATCC 1 cut(s) 718
BisI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 6 cut(s) 55, 58, 66, 88, 594, 865
Bme1390I CCNGG 2 cut(s) 836, 968
Bme18I GGWCC 2 cut(s) 779, 832
BmeT110I CYCGRG 2 cut(s) 188, 288
BmgT120I GGNCC 2 cut(s) 779, 832
BmiI GGNNCC 1 cut(s) 899
BmrFI CCNGG 2 cut(s) 836, 968
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 4 cut(s) 205, 539, 637, 1122
BmuI ACTGGG 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 798, 830
Bpu1102I GCTNAGC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 4 cut(s) 22, 587, 785, 966
BsaWI WCCGGW 1 cut(s) 1120
Bsc4I CCNNNNNNNGG 1 cut(s) 981
Bse1I ACTGG 2 cut(s) 712, 856
BseBI CCWGG 2 cut(s) 836, 968
BseDI CCNNGG 4 cut(s) 22, 587, 785, 966
BseGI GGATG 2 cut(s) 526, 652
BseLI CCNNNNNNNGG 1 cut(s) 981
BseMII CTCAG 5 cut(s) 74, 312, 363, 829, 1118
BseNI ACTGG 2 cut(s) 712, 856
BseRI GAGGAG 1 cut(s) 265
BseXI GCAGC 3 cut(s) 76, 579, 875
BsgI GTGCAG 2 cut(s) 119, 293
Bsh1236I CGCG 3 cut(s) 84, 1035, 1037
BshFI GGCC 3 cut(s) 21, 53, 74
BshNI GGYRCC 1 cut(s) 897
BsiHKCI CYCGRG 2 cut(s) 188, 288
BsiSI CCGG 2 cut(s) 71, 1121
BslFI GGGAC 2 cut(s) 18, 40
BslI CCNNNNNNNGG 1 cut(s) 981
BsmAI GTCTC 5 cut(s) 118, 185, 328, 418, 763
BsmFI GGGAC 2 cut(s) 18, 40
BsnI GGCC 3 cut(s) 21, 53, 74
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 2 cut(s) 188, 288
Bsp143I GATC 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 60
Bsp19I CCATGG 2 cut(s) 587, 785
BspACI CCGC 7 cut(s) 54, 57, 82, 87, 121, 953, 1114
BspANI GGCC 3 cut(s) 21, 53, 74
BspCNI CTCAG 5 cut(s) 73, 311, 362, 828, 1117
BspFNI CGCG 3 cut(s) 84, 1035, 1037
BspHI TCATGA 1 cut(s) 1168
BspLI GGNNCC 1 cut(s) 899
BspPI GGATC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 897
BspTNI GGTCTC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 59
BsrI ACTGG 2 cut(s) 712, 856
BssECI CCNNGG 4 cut(s) 22, 587, 785, 966
BssMI GATC 1 cut(s) 558
BssT1I CCWWGG 3 cut(s) 22, 587, 785
Bst2UI CCWGG 2 cut(s) 836, 968
Bst4CI ACNGT 2 cut(s) 832, 1057
Bst6I CTCTTC 1 cut(s) 906
BstC8I GCNNGC 7 cut(s) 76, 203, 396, 580, 597, 1084, 1137
BstDEI CTNAG 6 cut(s) 60, 245, 298, 349, 815, 1104
BstDSI CCRYGG 2 cut(s) 587, 785
BstF5I GGATG 2 cut(s) 526, 652
BstFNI CGCG 3 cut(s) 84, 1035, 1037
BstHHI GCGC 4 cut(s) 86, 682, 847, 1037
BstKTI GATC 1 cut(s) 561
BstMAI GTCTC 5 cut(s) 118, 185, 328, 418, 763
BstMBI GATC 1 cut(s) 558
BstMWI GCNNNNNNNGC 1 cut(s) 1083
BstNI CCWGG 2 cut(s) 836, 968
BstNSI RCATGY 2 cut(s) 599, 680
BstSCI CCNGG 2 cut(s) 834, 966
BstUI CGCG 3 cut(s) 84, 1035, 1037
BstV1I GCAGC 3 cut(s) 76, 579, 875
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BsuI GTATCC 1 cut(s) 718
BsuRI GGCC 3 cut(s) 21, 53, 74
BtgI CCRYGG 2 cut(s) 587, 785
BtsCI GGATG 2 cut(s) 526, 652
BtsI GCAGTG 1 cut(s) 989
BtsIMutI CAGTG 2 cut(s) 823, 989
Cac8I GCNNGC 7 cut(s) 76, 203, 396, 580, 597, 1084, 1137
CaiI CAGNNNCTG 1 cut(s) 1061
CciI TCATGA 1 cut(s) 1168
CfoI GCGC 4 cut(s) 86, 682, 847, 1037
Cfr13I GGNCC 2 cut(s) 779, 832
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 822, 898
CviAII CATG 6 cut(s) 178, 588, 596, 677, 786, 1169
CviQI GTAC 2 cut(s) 822, 898
DdeI CTNAG 6 cut(s) 60, 245, 298, 349, 815, 1104
DpnI GATC 1 cut(s) 560
DpnII GATC 1 cut(s) 558
DraI TTTAAA 1 cut(s) 880
DrdI GACNNNNNNGTC 1 cut(s) 777
DseDI GACNNNNNNGTC 1 cut(s) 777
EaeI YGGCCR 2 cut(s) 51, 72
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
Eco130I CCWWGG 3 cut(s) 22, 587, 785
Eco31I GGTCTC 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 779, 832
Eco57I CTGAAG 1 cut(s) 930
Eco88I CYCGRG 2 cut(s) 188, 288
EcoRII CCWGG 2 cut(s) 834, 966
EcoT14I CCWWGG 3 cut(s) 22, 587, 785
ErhI CCWWGG 3 cut(s) 22, 587, 785
FaeI CATG 6 cut(s) 181, 591, 599, 680, 789, 1172
FaqI GGGAC 2 cut(s) 18, 40
FatI CATG 6 cut(s) 177, 587, 595, 676, 785, 1168
FblI GTMKAC 1 cut(s) 1146
Fnu4HI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
FokI GGATG 2 cut(s) 533, 659
Fsp4HI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
FspBI CTAG 1 cut(s) 600
FspI TGCGCA 1 cut(s) 846
GlaI GCGC 4 cut(s) 85, 681, 846, 1036
GluI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
HaeIII GGCC 3 cut(s) 21, 53, 74
HapII CCGG 2 cut(s) 71, 1121
HgaI GACGC 1 cut(s) 479
HhaI GCGC 4 cut(s) 86, 682, 847, 1037
Hin1II CATG 6 cut(s) 181, 591, 599, 680, 789, 1172
Hin6I GCGC 4 cut(s) 84, 680, 845, 1035
HinP1I GCGC 4 cut(s) 84, 680, 845, 1035
HincII GTYRAC 1 cut(s) 1147
HindII GTYRAC 1 cut(s) 1147
HinfI GANTC 8 cut(s) 28, 184, 193, 230, 284, 688, 985, 1039
HpaII CCGG 2 cut(s) 71, 1121
HphI GGTGA 3 cut(s) 304, 314, 467
Hpy166II GTNNAC 4 cut(s) 295, 761, 1025, 1147
Hpy188I TCNGA 2 cut(s) 229, 1000
Hpy188III TCNNGA 8 cut(s) 46, 146, 188, 190, 510, 562, 735, 1169
Hpy8I GTNNAC 4 cut(s) 295, 761, 1025, 1147
Hpy99I CGWCG 3 cut(s) 107, 473, 655
HpyAV CCTTC 7 cut(s) 49, 271, 602, 787, 969, 1005, 1152
HpyCH4III ACNGT 2 cut(s) 832, 1057
HpyCH4IV ACGT 2 cut(s) 544, 763
HpyCH4V TGCA 5 cut(s) 136, 274, 394, 595, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 1083
HpyF3I CTNAG 6 cut(s) 60, 245, 298, 349, 815, 1104
HpySE526I ACGT 2 cut(s) 544, 763
Hsp92II CATG 6 cut(s) 181, 591, 599, 680, 789, 1172
HspAI GCGC 4 cut(s) 84, 680, 845, 1035
KpnI GGTACC 1 cut(s) 901
Kzo9I GATC 1 cut(s) 558
LmnI GCTCC 2 cut(s) 806, 931
Lsp1109I GCAGC 3 cut(s) 76, 579, 875
LweI GCATC 4 cut(s) 205, 539, 637, 1122
MaeI CTAG 1 cut(s) 600
MaeII ACGT 2 cut(s) 544, 763
MaeIII GTNAC 1 cut(s) 1123
MalI GATC 1 cut(s) 560
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 558
MboII GAAGA 6 cut(s) 34, 167, 274, 568, 723, 923
MflI RGATCY 1 cut(s) 558
MluCI AATT 6 cut(s) 308, 389, 566, 738, 858, 1050
MlyI GAGTC 2 cut(s) 22, 187
MmeI TCCRAC 3 cut(s) 306, 624, 953
MseI TTAA 2 cut(s) 857, 879
MslI CAYNNNNRTG 1 cut(s) 1130
MspI CCGG 2 cut(s) 71, 1121
MspR9I CCNGG 2 cut(s) 836, 968
MvaI CCWGG 2 cut(s) 836, 968
MvnI CGCG 3 cut(s) 84, 1035, 1037
MwoI GCNNNNNNNGC 1 cut(s) 1083
NcoI CCATGG 2 cut(s) 587, 785
NdeII GATC 1 cut(s) 558
NlaIII CATG 6 cut(s) 181, 591, 599, 680, 789, 1172
NlaIV GGNNCC 1 cut(s) 899
NmuCI GTSAC 1 cut(s) 1123
NsbI TGCGCA 1 cut(s) 846
NspI RCATGY 2 cut(s) 599, 680
PaeI GCATGC 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 188
PagI TCATGA 1 cut(s) 1168
PfeI GAWTC 6 cut(s) 184, 230, 284, 688, 985, 1039
PfoI TCCNGGA 1 cut(s) 834
PkrI GCNGC 6 cut(s) 55, 58, 66, 88, 594, 865
PleI GAGTC 2 cut(s) 22, 187
PpsI GAGTC 2 cut(s) 22, 187
Psp6I CCWGG 2 cut(s) 834, 966
PspGI CCWGG 2 cut(s) 834, 966
PspN4I GGNNCC 1 cut(s) 899
PspPI GGNCC 2 cut(s) 779, 832
PstNI CAGNNNCTG 1 cut(s) 1061
PsuI RGATCY 1 cut(s) 558
RsaI GTAC 2 cut(s) 823, 899
RsaNI GTAC 2 cut(s) 822, 898
RseI CAYNNNNRTG 1 cut(s) 1130
SalI GTCGAC 1 cut(s) 1145
SaqAI TTAA 2 cut(s) 857, 879
SatI GCNGC 6 cut(s) 54, 57, 65, 87, 593, 864
Sau3AI GATC 1 cut(s) 558
Sau96I GGNCC 2 cut(s) 779, 832
SchI GAGTC 2 cut(s) 22, 187
ScrFI CCNGG 2 cut(s) 836, 968
SfaNI GCATC 4 cut(s) 205, 539, 637, 1122
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 2 cut(s) 779, 832
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 1130
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SphI GCATGC 1 cut(s) 599
Sse9I AATT 6 cut(s) 308, 389, 566, 738, 858, 1050
SsiI CCGC 7 cut(s) 54, 57, 82, 87, 121, 953, 1114
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 2 cut(s) 834, 966
StyI CCWWGG 3 cut(s) 22, 587, 785
TaaI ACNGT 2 cut(s) 832, 1057
TaiI ACGT 2 cut(s) 547, 766
TaqI TCGA 6 cut(s) 45, 189, 386, 700, 734, 1146
TasI AATT 6 cut(s) 308, 389, 566, 738, 858, 1050
TauI GCSGC 3 cut(s) 56, 59, 89
TfiI GAWTC 6 cut(s) 184, 230, 284, 688, 985, 1039
Tru1I TTAA 2 cut(s) 857, 879
Tru9I TTAA 2 cut(s) 857, 879
TscAI CASTG 2 cut(s) 823, 996
TseFI GTSAC 1 cut(s) 1123
TseI GCWGC 3 cut(s) 64, 592, 863
Tsp45I GTSAC 1 cut(s) 1123
TspDTI ATGAA 5 cut(s) 168, 302, 321, 606, 1157
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 2 cut(s) 823, 996
VpaK11BI GGWCC 2 cut(s) 779, 832
XapI RAATTY 2 cut(s) 308, 738
XceI RCATGY 2 cut(s) 599, 680
XhoI CTCGAG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 1146
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.