pycom13g28880

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0005149
Physical Location & Seq
Forward (+)
25085736 .. 25086092
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28880.1

Sequence Viewer

Length: 357 bp
ATGTTCCTTATTGTTGGTACAAATGTTACCATTGTACAAGAGAGCTCCATTCCCCAACACATTGCTAATTTGGCTAGGTACATGAGGATGACTGTGGTTTATTCTGTACCAGCATTTCCTGTCATTACTGGGAAATCTTATAATGCCACAAAGATAGTAATGAAGGAAATGGATATCATCTCCACAAAGCTGTTTCTAGCGAGTGAAAGCATGTGCCTTGCTATGAGGTGGAGATCTAGTCAACCTGATAAGCATTACAAAAAGCTGCTTGCGTCCAAGTCTCCTGATGGCCCTTCCAATGAAAGAAAATTGTTACGTTATGCAAATATGCTGCCAAATGCCATTTTCGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

9.76

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AfaI GTAC 4 cut(s) 19, 36, 80, 108
AluBI AGCT 3 cut(s) 45, 190, 265
AluI AGCT 3 cut(s) 45, 190, 265
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 285
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 265, 331
AspS9I GGNCC 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 348
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BanII GRGCYC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 252, 318
BccI CCATC 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 3 cut(s) 75, 197, 237
BglII AGATCT 1 cut(s) 233
BisI GCNGC 2 cut(s) 266, 332
BlsI GCNGC 2 cut(s) 267, 333
BmgT120I GGNCC 1 cut(s) 290
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 60
BseGI GGATG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 252, 318
BshFI GGCC 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 285
BsnI GGCC 1 cut(s) 291
Bsp119I TTCGAA 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 47
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 233
BspANI GGCC 1 cut(s) 291
BspT104I TTCGAA 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 133
BssMI GATC 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 94
BstAUI TGTACA 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 270
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 252, 318
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 1 cut(s) 261
Csp6I GTAC 4 cut(s) 18, 35, 79, 107
CviAII CATG 2 cut(s) 82, 211
CviJI RGCY 5 cut(s) 45, 74, 190, 265, 291
CviKI_1 RGCY 5 cut(s) 45, 74, 190, 265, 291
CviQI GTAC 4 cut(s) 18, 35, 79, 107
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 45
EcoRV GATATC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 2 cut(s) 85, 214
FaiI YATR 6 cut(s) 83, 141, 212, 224, 321, 329
FatI CATG 2 cut(s) 81, 210
Fnu4HI GCNGC 2 cut(s) 266, 332
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 266, 332
FspBI CTAG 3 cut(s) 75, 197, 237
GluI GCNGC 2 cut(s) 266, 332
HaeIII GGCC 1 cut(s) 291
HgaI GACGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 85, 214
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HinfI GANTC 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 157, 303
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 2 cut(s) 85, 214
Kzo9I GATC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 5 cut(s) 114, 123, 132, 258, 297
Lsp1109I GCAGC 2 cut(s) 252, 318
MaeI CTAG 3 cut(s) 75, 197, 237
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 2 cut(s) 25, 312
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 2 cut(s) 67, 308
MnlI CCTC 2 cut(s) 78, 219
MslI CAYNNNNRTG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 233
NlaIII CATG 2 cut(s) 85, 214
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 348
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 267, 333
PsiI TTATAA 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 4 cut(s) 19, 36, 80, 108
RsaNI GTAC 4 cut(s) 18, 35, 79, 107
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 47
SatI GCNGC 2 cut(s) 266, 332
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 1 cut(s) 290
SduI GDGCHC 1 cut(s) 47
SetI ASST 7 cut(s) 47, 80, 192, 230, 247, 267, 319
SfuI TTCGAA 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 2 cut(s) 67, 308
SspMI CTAG 3 cut(s) 75, 197, 237
SstI GAGCTC 1 cut(s) 47
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 348
TasI AATT 2 cut(s) 67, 308
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 350
TseI GCWGC 2 cut(s) 265, 331
TspDTI ATGAA 2 cut(s) 176, 315
XceI RCATGY 1 cut(s) 214
XspI CTAG 3 cut(s) 75, 197, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.