Rroxscaffold_6G00422160

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005149
Physical Location & Seq
Forward (+)
43154446 .. 43161447
7002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422160.1

Sequence Viewer

Length: 3009 bp
ATGGGTATCATATCCAGGAGGATTTTCCCAGCATGTGGGAACATGTGTGTATGCTGCCCTGCTATGAGGTCAAGATCTAGACAACCTGTTAAGCGTTACAAAAAACTGCTTGCAGAAATCTTTCCCAAGTCTCCTGATGGCCCTCCCAATGAAAGGAAAATTGTTAAGTTATGCGAGTATGCTGCAAAGAATCCTTTTAGAATCCCTAAGATTGCCAAACATCTTGAAGATAGGTGTTACAAAGAGCTGCGACTTGAGCATGTCAAATTCATCAATATTGTTGCAGAGGCCTACAACAAGTTACTTTGCCTCTGTAAGGACCAGATGGCTTATTTTGCTGTCAGTGTGCTAAACGTAGTCACTGAGCTTCTGGACAACTCTAAGCAAGACGCTCTCCGTATAATTGGATGCCAAACTCTGACAAGGTTCATCTACACTCAGGCGAACGGAACTTATACACACAACATTGAGAGTTTGGTTCACAAAGTATGTAAGCTGGCACATGAGAGTGGTGAAGACCATCAAAAACGCTGCTTGAGAGCATCAAGTTTGCAGTGCCTTTCAGCCATGGTCCAATTCATGACTGAATTTTCATATATTTTTGTTGATTTTGATGAGATTGTACATGCCACTTTGGATAACTATGAGCCTGATGCAAATGATGATGATGATGAGGGAGCGGAGTCGCATCATAATTGGGTGGATGAAGTAGTTCGAAGTGAAGGTAGAGTTGGTGCAATTGCTGGTGGGTATTCTAGCCCTAGTTGTAAGGTCATCAGGCCACGGCCAGAAAAAAAGGATCCTTCTCTTCTCACAAGAGAAGAGACAGAGACGCCAAACATTTGGGCTCAAATTTGTATCCAGAGAATGATTGAATTAGCCAAGGAGAGCACAACAATGCGCCGGGTATTGGATCCAATGTTTGTCTACTTTGACTCCAGGCACCATTGGGTTCCTCGACAAGGGTTGGCTTTGTCAGTTTTGTCTGATATGTCATACTTTTTGGAGACTTCAGGAAATCAGCAGATGATTTTAGCCTATGCAATCCGTCATCTTGACCACAAAAACGTTTCACATGATCCACAACTCAAATCTCAGATCATTCAAGTTGCTAGTGCTTTGGCAAGCCAAATTCGATCTGGAACCGTGCTAGAAGAAATTGGTTTTGTCTCTGACCTATGCAGGCATTTGAGGAAGAGTCTTCAAGCTACTGTTGAATCAGTTGGAGAGCAAGAGTCTAACATTAATACCATGCTACAGAGTTCCATTGAAGATTGCTTATTAGAAATTGCTAGAGGGATTGGAAATATAAGACCATTGTTTGACATGATGTCTATATCTCTGGAGAAGCTTTCATCTGGAACTGTTGCCAGGGCAACCATGGGATCATTGATGATTGTTGCTCACATGATCTCATTAGCATTGATCTCTTCACATTCACAGCAGGTGTTTCCTGAATCCCTTCTTGTCCAGCTTTTGAAAGTGATGATGCATCCAGATGTTGAGGTGCGTGTTGGAGCACACCAGATATTTTCTGTTCTTCTCATTCCATGTTCTAATCGGCCCCGACATGAAGTTGCTCCTCTACAATCTGGTTATGTATACCAGTCAAGAAAAGGGAATTCAAATACAGCATCTATTGCTTCAATTACGGCTAGACTTGAAAAGCTTAGGAGGGAAAAAGATGGCCCCAAAGCAGAAAATCAGGAGACTGATGCTCGTGATGATTTTAAAGATAGAGATACTGCAGAAGAAGATTGCAAGCAAGGGCATACCCACAAGAGTTCCCCGAACTTCTATAAAATTAGCTCTATTATTGACAAGACTGCTGGGTCAAGCCTAACAGAGCCTGAACCGTACGTAATGAAGTTTAGTGAGGATCAAATAGCAGACTTGCTGTCTGCTTTTTGGATACAAGCCAATCTCCCAGATAATTTGCCTTCAAATATTGAAGCAATAGCTCATTCTTTCATTTTAATGATAGTTTCTTCTCATTTGAAGAATCCAAATGGCAACCTTATGGTTCGTTCCTTTCAACTTCTGCTATCTCTGAGGAATATCTCCCTTGATCCTAACAATGGGATGTTGCCTCCAGCTTGCCAGAGATCTATCGTTGTGCTATCGATTGGCCTGTTGATGTTTTCTGCTCAGATCTATCACATTCCTAATCTAAATGATCTGCTCAAATCATTAATACCATCTGATGTTGATCCATATTTGGGAATCAGTGATGACCTTCAAGTTTTTCTAAGGCCTGAGGCAGACATCACAAAATATGGATCTGTTATCGATAACCAGCTAGCTTCATCTTTACTATTTGATTTGCGGAAAAAATTATATGAATCTGACGATGTCATAAGGGAAATCTTAGTTCAGTTTCTATCAGACATTACTGAGATGGAGGCAGAGGCTGTGGCTAACCAACTTTTGGAGTCATTCGTACCTGATGATGCGTTCATGTTTGGTCCACAATCAATGCTTGACTTTGATGAAAATCAAATGCCAGGCCATTCGAAAGAATCACTTTCCTTTGATGGGGAATTTCCAACAAATTCATCAGTTGAGGATGATGCAACAAGTGAAGCATCAGTTGTTGCTGATTTCTCCCGGTTCATTCCTAGAGTCCCTTCATCCTCTTCTGTCTCCCATGTTATCAGTGTTGGACAGCTTCTGGAATCAGCACTTGAGGTTGCTGGTCAAGTAGCAGGAACATCTGTATCTACATCACCCCTCCCGTACAACACCATGGCAAGACACTGTGAAGCCCTTGGCACAGGCACAAGGAAGAAGCTTTCTAATTGGTTGGCCCATGAACATCATCAAAGCAACACTGTCCGTGACATTTTGTCTCCGCCATTTCTTGCAGGTGGATGCACAGCACTCCAGAAGTTAATTAATGAACCTGGGGTTACCCAGGGAGCTGCATCGGCACAGGACTCGTGGTTAGCTGCTATCAGGTTGCCTCCTGCTAGTCCATTTGACAACTTCCTCAAGGCAGCTGGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1002

Amino Acids

111.51

Weight (kDa)

5.74

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 65 - 159 8.1e-21 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1435, 2855
AasI GACNNNNNNGTC 1 cut(s) 1831
Acc36I ACCTGC 2 cut(s) 1435, 2855
AccB1I GGYRCC 1 cut(s) 942
AccB7I CCANNNNNTGG 2 cut(s) 35, 2428
AccBSI CCGCTC 1 cut(s) 680
AccI GTMKAC 2 cut(s) 927, 1602
AciI CCGC 3 cut(s) 680, 2326, 2852
AclI AACGTT 1 cut(s) 1068
AcoI YGGCCR 1 cut(s) 785
AcsI RAATTY 7 cut(s) 266, 587, 852, 1131, 1621, 2540, 2551
AcuI CTGAAG 1 cut(s) 996
AcyI GRCGYC 1 cut(s) 833
AfaI GTAC 4 cut(s) 624, 1859, 2442, 2738
AfiI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 910, 962, 2078, 2219, 2428, 2535
AflIII ACRYGT 1 cut(s) 42
AhdI GACNNNNNGTC 3 cut(s) 1330, 1897, 2845
AjnI CCWGG 6 cut(s) 14, 938, 1370, 2503, 2902, 2913
AjuI GAANNNNNNNTTGG 2 cut(s) 714, 746
Alw21I GWGCWC 2 cut(s) 893, 1522
Alw26I GTCTC 8 cut(s) 135, 818, 824, 1001, 1174, 1703, 2647, 2853
AlwNI CAGNNNCTG 3 cut(s) 1850, 2411, 2671
ApeKI GCWGC 7 cut(s) 54, 182, 247, 531, 2921, 2948, 2996
ApoI RAATTY 7 cut(s) 266, 587, 852, 1131, 1621, 2540, 2551
AseI ATTAAT 3 cut(s) 1245, 2192, 2895
Asp700I GAANNNNTTC 3 cut(s) 120, 711, 1461
AspLEI GCGC 1 cut(s) 903
AspS9I GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
AsuC2I CCSGG 2 cut(s) 905, 2608
AsuHPI GGTGA 2 cut(s) 524, 2718
AsuII TTCGAA 2 cut(s) 715, 2513
AsuNHI GCTAGC 1 cut(s) 2299
AvaII GGWCC 3 cut(s) 319, 571, 2465
AxyI CCTNAGG 1 cut(s) 2256
BaeI ACNNNNGTAYC 2 cut(s) 2700, 2733
BamHI GGATCC 2 cut(s) 799, 913
BanI GGYRCC 1 cut(s) 942
BanII GRGCYC 1 cut(s) 850
BauI CACGAG 2 cut(s) 1719, 2938
BbsI GAAGAC 2 cut(s) 522, 1193
Bbv12I GWGCWC 2 cut(s) 893, 1522
BbvI GCAGC 6 cut(s) 41, 169, 234, 518, 2908, 2935
BccI CCATC 7 cut(s) 131, 319, 528, 1679, 2206, 2392, 2528
BceAI ACGGC 2 cut(s) 800, 1668
BcgI CGANNNNNNTGC 4 cut(s) 164, 198, 2919, 2953
BciT130I CCWGG 6 cut(s) 16, 940, 1372, 2505, 2904, 2915
BciVI GTATCC 2 cut(s) 869, 1905
BcnI CCSGG 2 cut(s) 905, 2608
BcoDI GTCTC 8 cut(s) 135, 818, 824, 1001, 1174, 1703, 2647, 2853
BfmI CTRYAG 2 cut(s) 1256, 1746
BfuAI ACCTGC 2 cut(s) 1435, 2855
BfuI GTATCC 2 cut(s) 869, 1905
BglII AGATCT 3 cut(s) 74, 2105, 2151
BisI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
BlsI GCNGC 7 cut(s) 56, 184, 249, 533, 2923, 2950, 2998
Bme1390I CCNGG 8 cut(s) 16, 905, 940, 1372, 2505, 2608, 2904, 2915
Bme18I GGWCC 3 cut(s) 319, 571, 2465
BmeRI GACNNNNNGTC 3 cut(s) 1330, 1897, 2845
BmgT120I GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
BmiI GGNNCC 7 cut(s) 801, 915, 944, 954, 1144, 1565, 1690
BmrFI CCNGG 8 cut(s) 16, 905, 940, 1372, 2505, 2608, 2904, 2915
BmtI GCTAGC 1 cut(s) 2303
BpiI GAAGAC 2 cut(s) 522, 1193
BpmI CTGGAG 4 cut(s) 922, 1364, 2076, 2867
Bpu10I CCTNAGC 1 cut(s) 1670
Bpu14I TTCGAA 2 cut(s) 715, 2513
BpuEI CTTGAG 4 cut(s) 275, 556, 2705, 2975
BpuMI CCSGG 2 cut(s) 905, 2608
Bsa29I ATCGAT 2 cut(s) 2123, 2289
BsaAI YACGTR 1 cut(s) 1861
BsaBI GATNNNNATC 2 cut(s) 2208, 2493
BsaHI GRCGYC 1 cut(s) 833
BsaXI ACNNNNNCTCC 2 cut(s) 920, 950
Bsc4I CCNNNNNNNGG 9 cut(s) 35, 153, 316, 910, 962, 2078, 2219, 2428, 2535
Bse1I ACTGG 1 cut(s) 1606
Bse21I CCTNAGG 1 cut(s) 2256
Bse8I GATNNNNATC 2 cut(s) 2208, 2493
BseBI CCWGG 6 cut(s) 16, 940, 1372, 2505, 2904, 2915
BseCI ATCGAT 2 cut(s) 2123, 2289
BseGI GGATG 7 cut(s) 413, 709, 1492, 2088, 2572, 2630, 2876
BseJI GATNNNNATC 2 cut(s) 2208, 2493
BseLI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 910, 962, 2078, 2219, 2428, 2535
BseMII CTCAG 7 cut(s) 354, 452, 1109, 2042, 2162, 2247, 2385
BseNI ACTGG 1 cut(s) 1606
BseRI GAGGAG 1 cut(s) 1572
BseXI GCAGC 6 cut(s) 41, 169, 234, 518, 2908, 2935
BseYI CCCAGC 2 cut(s) 28, 1829
BshNI GGYRCC 1 cut(s) 942
BshVI ATCGAT 2 cut(s) 2123, 2289
BsiHKAI GWGCWC 2 cut(s) 893, 1522
BsiSI CCGG 2 cut(s) 904, 2608
BsiWI CGTACG 1 cut(s) 1857
BslFI GGGAC 1 cut(s) 2609
BslI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 910, 962, 2078, 2219, 2428, 2535
BsmAI GTCTC 8 cut(s) 135, 818, 824, 1001, 1174, 1703, 2647, 2853
BsmBI CGTCTC 1 cut(s) 824
BsmFI GGGAC 1 cut(s) 2609
Bsp119I TTCGAA 2 cut(s) 715, 2513
Bsp1286I GDGCHC 3 cut(s) 850, 893, 1522
Bsp1407I TGTACA 1 cut(s) 622
Bsp19I CCATGG 3 cut(s) 567, 1380, 2745
BspACI CCGC 3 cut(s) 680, 2326, 2852
BspCNI CTCAG 7 cut(s) 355, 451, 1108, 2043, 2161, 2248, 2386
BspDI ATCGAT 2 cut(s) 2123, 2289
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 7 cut(s) 801, 915, 944, 954, 1144, 1565, 1690
BspMAI CTGCAG 1 cut(s) 1750
BspMI ACCTGC 2 cut(s) 1435, 2855
BspOI GCTAGC 1 cut(s) 2303
BspT104I TTCGAA 2 cut(s) 715, 2513
BspT107I GGYRCC 1 cut(s) 942
BsrBI CCGCTC 1 cut(s) 680
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 1 cut(s) 1606
BssNAI GTATAC 1 cut(s) 1603
BssNI GRCGYC 1 cut(s) 833
BssSI CACGAG 2 cut(s) 1719, 2938
BssT1I CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
Bst1107I GTATAC 1 cut(s) 1603
Bst2BI CACGAG 2 cut(s) 1719, 2938
Bst2UI CCWGG 6 cut(s) 16, 940, 1372, 2505, 2904, 2915
Bst4CI ACNGT 6 cut(s) 1147, 1213, 1366, 1857, 2759, 2833
Bst6I CTCTTC 5 cut(s) 813, 816, 1190, 1435, 2641
BstACI GRCGYC 1 cut(s) 833
BstAPI GCANNNNNTGC 1 cut(s) 1640
BstAUI TGTACA 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 1861
BstBI TTCGAA 2 cut(s) 715, 2513
BstC8I GCNNGC 7 cut(s) 111, 498, 1126, 1184, 1763, 2098, 2301
BstDSI CCRYGG 4 cut(s) 567, 782, 1380, 2745
BstEII GGTNACC 1 cut(s) 2908
BstENI CCTNNNNNAGG 2 cut(s) 314, 960
BstF5I GGATG 7 cut(s) 413, 709, 1492, 2088, 2572, 2630, 2876
BstHHI GCGC 1 cut(s) 903
BstMAI GTCTC 8 cut(s) 135, 818, 824, 1001, 1174, 1703, 2647, 2853
BstMWI GCNNNNNNNGC 4 cut(s) 256, 335, 1640, 2927
BstNI CCWGG 6 cut(s) 16, 940, 1372, 2505, 2904, 2915
BstNSI RCATGY 4 cut(s) 36, 46, 263, 629
BstPI GGTNACC 1 cut(s) 2908
BstSCI CCNGG 8 cut(s) 14, 903, 938, 1370, 2503, 2606, 2902, 2913
BstSFI CTRYAG 2 cut(s) 1256, 1746
BstSNI TACGTA 1 cut(s) 1861
BstV1I GCAGC 6 cut(s) 41, 169, 234, 518, 2908, 2935
BstV2I GAAGAC 2 cut(s) 522, 1193
BstX2I RGATCY 6 cut(s) 74, 799, 913, 2105, 2151, 2279
BstXI CCANNNNNNTGG 1 cut(s) 843
BstYI RGATCY 6 cut(s) 74, 799, 913, 2105, 2151, 2279
BstZ17I GTATAC 1 cut(s) 1603
Bsu15I ATCGAT 2 cut(s) 2123, 2289
Bsu36I CCTNAGG 1 cut(s) 2256
BsuI GTATCC 2 cut(s) 869, 1905
BsuTUI ATCGAT 2 cut(s) 2123, 2289
BtgI CCRYGG 4 cut(s) 567, 782, 1380, 2745
BtsCI GGATG 7 cut(s) 413, 709, 1492, 2088, 2572, 2630, 2876
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 7 cut(s) 349, 360, 560, 2233, 2662, 2755, 2829
BveI ACCTGC 2 cut(s) 1435, 2855
Cac8I GCNNGC 7 cut(s) 111, 498, 1126, 1184, 1763, 2098, 2301
CaiI CAGNNNCTG 3 cut(s) 1850, 2411, 2671
CciI TCATGA 1 cut(s) 579
CfoI GCGC 1 cut(s) 903
Cfr13I GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
ClaI ATCGAT 2 cut(s) 2123, 2289
CseI GACGC 2 cut(s) 398, 841
Csp6I GTAC 4 cut(s) 623, 1858, 2441, 2737
CviQI GTAC 4 cut(s) 623, 1858, 2441, 2737
DraI TTTAAA 1 cut(s) 1732
DrdI GACNNNNNNGTC 1 cut(s) 1831
DriI GACNNNNNGTC 3 cut(s) 1330, 1897, 2845
DseDI GACNNNNNNGTC 1 cut(s) 1831
EaeI YGGCCR 1 cut(s) 785
Eam1104I CTCTTC 5 cut(s) 813, 816, 1190, 1435, 2641
Eam1105I GACNNNNNGTC 3 cut(s) 1330, 1897, 2845
EarI CTCTTC 5 cut(s) 813, 816, 1190, 1435, 2641
EciI GGCGGA 1 cut(s) 2841
Eco105I TACGTA 1 cut(s) 1861
Eco130I CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
Eco147I AGGCCT 2 cut(s) 290, 2254
Eco24I GRGCYC 1 cut(s) 850
Eco47I GGWCC 3 cut(s) 319, 571, 2465
Eco57I CTGAAG 1 cut(s) 996
Eco81I CCTNAGG 1 cut(s) 2256
Eco91I GGTNACC 1 cut(s) 2908
EcoNI CCTNNNNNAGG 2 cut(s) 314, 960
EcoO65I GGTNACC 1 cut(s) 2908
EcoRI GAATTC 1 cut(s) 1621
EcoRII CCWGG 6 cut(s) 14, 938, 1370, 2503, 2902, 2913
EcoT14I CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
EcoT22I ATGCAT 1 cut(s) 1494
EcoT38I GRGCYC 1 cut(s) 850
ErhI CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
Esp3I CGTCTC 1 cut(s) 824
FalI AAGNNNNNCTT 2 cut(s) 2508, 2540
FaqI GGGAC 1 cut(s) 2609
FblI GTMKAC 2 cut(s) 927, 1602
Fnu4HI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
FokI GGATG 7 cut(s) 420, 716, 1479, 2095, 2579, 2617, 2883
FriOI GRGCYC 1 cut(s) 850
Fsp4HI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
GlaI GCGC 1 cut(s) 902
GluI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
GsaI CCCAGC 2 cut(s) 32, 1833
GsuI CTGGAG 4 cut(s) 922, 1364, 2076, 2867
HapII CCGG 2 cut(s) 904, 2608
HgaI GACGC 2 cut(s) 398, 841
HhaI GCGC 1 cut(s) 903
Hin1I GRCGYC 1 cut(s) 833
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HindIII AAGCTT 3 cut(s) 1349, 1667, 2789
HpaII CCGG 2 cut(s) 904, 2608
HphI GGTGA 2 cut(s) 524, 2718
Hpy166II GTNNAC 4 cut(s) 481, 928, 1603, 2468
Hpy188I TCNGA 9 cut(s) 420, 988, 1098, 1174, 2052, 2151, 2203, 2347, 2386
Hpy8I GTNNAC 4 cut(s) 481, 928, 1603, 2468
HpyAV CCTTC 6 cut(s) 716, 813, 1472, 1950, 2246, 2637
HpyCH4III ACNGT 6 cut(s) 1147, 1213, 1366, 1857, 2759, 2833
HpyCH4IV ACGT 3 cut(s) 354, 1068, 1860
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 335, 1640, 2927
HpySE526I ACGT 3 cut(s) 354, 1068, 1860
Hsp92I GRCGYC 1 cut(s) 833
HspAI GCGC 1 cut(s) 901
LmnI GCTCC 4 cut(s) 677, 1517, 1585, 2918
Lsp1109I GCAGC 6 cut(s) 41, 169, 234, 518, 2908, 2935
MaeII ACGT 3 cut(s) 354, 1068, 1860
MaeIII GTNAC 6 cut(s) 95, 236, 300, 358, 2837, 2908
MbiI CCGCTC 1 cut(s) 680
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 6 cut(s) 74, 799, 913, 2105, 2151, 2279
MhlI GDGCHC 3 cut(s) 850, 893, 1522
MlyI GAGTC 7 cut(s) 692, 929, 1207, 1244, 2441, 2631, 2930
MmeI TCCRAC 4 cut(s) 1204, 1495, 2570, 2641
Mph1103I ATGCAT 1 cut(s) 1494
MroXI GAANNNNTTC 3 cut(s) 120, 711, 1461
MseI TTAA 8 cut(s) 90, 165, 1245, 1731, 1976, 2192, 2891, 2895
MslI CAYNNNNRTG 4 cut(s) 507, 896, 1497, 1976
MspA1I CMGCKG 1 cut(s) 2999
MspI CCGG 2 cut(s) 904, 2608
MspR9I CCNGG 8 cut(s) 16, 905, 940, 1372, 2505, 2608, 2904, 2915
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 6 cut(s) 16, 940, 1372, 2505, 2904, 2915
MwoI GCNNNNNNNGC 4 cut(s) 256, 335, 1640, 2927
NciI CCSGG 2 cut(s) 905, 2608
NcoI CCATGG 3 cut(s) 567, 1380, 2745
NheI GCTAGC 1 cut(s) 2299
NlaIV GGNNCC 7 cut(s) 801, 915, 944, 954, 1144, 1565, 1690
NmuCI GTSAC 2 cut(s) 358, 2837
NsiI ATGCAT 1 cut(s) 1494
NspI RCATGY 4 cut(s) 36, 46, 263, 629
NspV TTCGAA 2 cut(s) 715, 2513
PacI TTAATTAA 1 cut(s) 2895
PagI TCATGA 1 cut(s) 579
PaqCI CACCTGC 2 cut(s) 1435, 2855
PasI CCCWGGG 1 cut(s) 2914
PceI AGGCCT 2 cut(s) 290, 2254
PciI ACATGT 1 cut(s) 42
PdmI GAANNNNTTC 3 cut(s) 120, 711, 1461
PfeI GAWTC 9 cut(s) 190, 201, 1217, 1457, 2002, 2223, 2342, 2519, 2675
Pfl23II CGTACG 1 cut(s) 1857
PflFI GACNNNGTC 1 cut(s) 2351
PflMI CCANNNNNTGG 2 cut(s) 35, 2428
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 7 cut(s) 56, 184, 249, 533, 2923, 2950, 2998
PleI GAGTC 7 cut(s) 691, 929, 1206, 1243, 2440, 2630, 2930
PpsI GAGTC 7 cut(s) 691, 929, 1206, 1243, 2440, 2630, 2930
Ppu21I YACGTR 1 cut(s) 1861
PscI ACATGT 1 cut(s) 42
PshBI ATTAAT 3 cut(s) 1245, 2192, 2895
Psp1406I AACGTT 1 cut(s) 1068
Psp6I CCWGG 6 cut(s) 14, 938, 1370, 2503, 2902, 2913
PspEI GGTNACC 1 cut(s) 2908
PspFI CCCAGC 2 cut(s) 28, 1829
PspGI CCWGG 6 cut(s) 14, 938, 1370, 2503, 2902, 2913
PspLI CGTACG 1 cut(s) 1857
PspN4I GGNNCC 7 cut(s) 801, 915, 944, 954, 1144, 1565, 1690
PspPI GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
PstI CTGCAG 1 cut(s) 1750
PstNI CAGNNNCTG 3 cut(s) 1850, 2411, 2671
PsuI RGATCY 6 cut(s) 74, 799, 913, 2105, 2151, 2279
PsyI GACNNNGTC 1 cut(s) 2351
PvuII CAGCTG 1 cut(s) 2999
RsaI GTAC 4 cut(s) 624, 1859, 2442, 2738
RsaNI GTAC 4 cut(s) 623, 1858, 2441, 2737
RseI CAYNNNNRTG 4 cut(s) 507, 896, 1497, 1976
SaqAI TTAA 8 cut(s) 90, 165, 1245, 1731, 1976, 2192, 2891, 2895
SatI GCNGC 7 cut(s) 55, 183, 248, 532, 2922, 2949, 2997
Sau96I GGNCC 7 cut(s) 140, 319, 571, 1563, 1688, 2465, 2806
SchI GAGTC 7 cut(s) 692, 929, 1207, 1244, 2441, 2631, 2930
ScrFI CCNGG 8 cut(s) 16, 905, 940, 1372, 2505, 2608, 2904, 2915
SduI GDGCHC 3 cut(s) 850, 893, 1522
SfcI CTRYAG 2 cut(s) 1256, 1746
SfuI TTCGAA 2 cut(s) 715, 2513
SinI GGWCC 3 cut(s) 319, 571, 2465
SmiMI CAYNNNNRTG 4 cut(s) 507, 896, 1497, 1976
SmlI CTYRAG 4 cut(s) 254, 535, 2684, 2990
SmoI CTYRAG 4 cut(s) 254, 535, 2684, 2990
SnaBI TACGTA 1 cut(s) 1861
SseBI AGGCCT 2 cut(s) 290, 2254
SsiI CCGC 3 cut(s) 680, 2326, 2852
SspI AATATT 2 cut(s) 277, 1948
StuI AGGCCT 2 cut(s) 290, 2254
StyD4I CCNGG 8 cut(s) 14, 903, 938, 1370, 2503, 2606, 2902, 2913
StyI CCWWGG 5 cut(s) 567, 882, 1380, 2745, 2767
TaaI ACNGT 6 cut(s) 1147, 1213, 1366, 1857, 2759, 2833
TaiI ACGT 3 cut(s) 357, 1071, 1863
TaqI TCGA 6 cut(s) 715, 958, 1135, 2123, 2289, 2513
TatI WGTACW 1 cut(s) 622
TfiI GAWTC 9 cut(s) 190, 201, 1217, 1457, 2002, 2223, 2342, 2519, 2675
Tru1I TTAA 8 cut(s) 90, 165, 1245, 1731, 1976, 2192, 2891, 2895
Tru9I TTAA 8 cut(s) 90, 165, 1245, 1731, 1976, 2192, 2891, 2895
TscAI CASTG 7 cut(s) 349, 367, 560, 2233, 2662, 2762, 2836
TseFI GTSAC 2 cut(s) 358, 2837
TseI GCWGC 7 cut(s) 54, 182, 247, 531, 2921, 2948, 2996
Tsp45I GTSAC 2 cut(s) 358, 2837
TspGWI ACGGA 4 cut(s) 386, 462, 1037, 2825
TspRI CASTG 7 cut(s) 349, 367, 560, 2233, 2662, 2762, 2836
Tth111I GACNNNGTC 1 cut(s) 2351
Van91I CCANNNNNTGG 2 cut(s) 35, 2428
VpaK11BI GGWCC 3 cut(s) 319, 571, 2465
VspI ATTAAT 3 cut(s) 1245, 2192, 2895
XagI CCTNNNNNAGG 2 cut(s) 314, 960
XapI RAATTY 7 cut(s) 266, 587, 852, 1131, 1621, 2540, 2551
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 4 cut(s) 36, 46, 263, 629
XcmI CCANNNNNNNNNTGG 2 cut(s) 1136, 1378
XmiI GTMKAC 2 cut(s) 927, 1602
XmnI GAANNNNTTC 3 cut(s) 120, 711, 1461
Zsp2I ATGCAT 1 cut(s) 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.