Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000488.1

Orthogroup ID

OG0013693

Physical Location & Seq

Genomic Coordinates Reverse (-)

39351 .. 42324

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000488.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgaatataatatcaagctcatcggagaatgtgaatcaggttcaaaatgatactaggactactgctacttgtggtggtgctggttatcatggtggtccgttaatactaagtgacggtaacctcaacctcaacatgctccaatttgaaacggatcagagtatgaaccagctgattaagacccagatagccaatcaccctcgttacccagatttggtttctgcttacatagattgccaaaaggttggagctccaccagagatgaaaagcctacttgaagaaatagggcggctaagcctccccataagcacttgcaggagtgagataggagctgatccagaactagatgagttcatggactcatactgtgggattcttcatacatacaaggaagagctttctaaaccggttgttgaagccaccgcattcttgagcaacattgaattgcagcttagcaacctctgcaaaggcacatttcagaaacccaactcggactatcattcaactgatgaagcagttggaagttcagaagaggacttaagttatggggaggtggaagcagccgagggccaagaaatctcagcgtttcgtgcttgtgatagggagcttaaagatatgctgctgcataagtacagtggctacctcagcaagctgaagaaggacttcttaaagacaagaaagaaaggaaagcttccgaaggatgctaggtctgcactattggactggtggaacactcactatagatggccatatcctacggaagaggagaaaatgcaactatctgtggcaactggtctggaccaaaggcagataaacaattggttcataaaccaaaggaagaggcactggaagccatcagaagacatgaagttcgctctcatggagaatgttagtggtagcatcaatggcgaaggaggacccagtatgctatttgacactggattcggaaatgatgatatcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

320

Amino Acids

35.98

Weight (kDa)

5.01

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013693)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07460 FvH4_6g07460 FvH4_6g07460
malus_domestica	MD04G1215500.v1.1 MD12G1205700.v1.1
prunus_persica	Prupe.6G312900_v2.0.a1
pyrus_communis	pycom04g17070 pycom12g19370
rosa_chinensis	RchiOBHm_Chr3g0457121
rosa_laevigata	RLG00000025247
rosa_multiflora	Rmu_sc0000488.1_g000009
rosa_roxburghii	Rroxscaffold_6G00422170
rosa_rugosa	Rorug03G0018800
rosa_samantha	Rh3AG078700 Rh3BG080500 Rh3CG080500 Rh3DG082300
rosa_wichuraiana	Rw3G006760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	286, 420
AclWI	GGATC	2 cut(s)	159, 326
AcoI	YGGCCR	1 cut(s)	743
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflII	CTTAAG	1 cut(s)	535
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	6 cut(s)	44, 146, 275, 413, 440, 501
AluBI	AGCT	9 cut(s)	18, 169, 248, 329, 394, 448, 604, 649, 688
AluI	AGCT	9 cut(s)	18, 169, 248, 329, 394, 448, 604, 649, 688
Alw21I	GWGCWC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	159, 326
AoxI	GGCC	2 cut(s)	565, 743
ApeKI	GCWGC	4 cut(s)	445, 557, 616, 619
ArsI	GACNNNNNNTTYG	4 cut(s)	851, 883, 923, 955
AsiGI	ACCGGT	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	659
AspS9I	GGNCC	4 cut(s)	95, 565, 796, 914
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	95, 796, 914
BalI	TGGCCA	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	250
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	4 cut(s)	457, 569, 603, 606
BccI	CCATC	2 cut(s)	735, 859
BfaI	CTAG	3 cut(s)	54, 341, 702
BfmI	CTRYAG	1 cut(s)	736
BfrI	CTTAAG	1 cut(s)	535
BisI	GCNGC	5 cut(s)	287, 446, 558, 617, 620
BlpI	GCTNAGC	2 cut(s)	290, 449
BlsI	GCNGC	5 cut(s)	288, 447, 559, 618, 621
Bme18I	GGWCC	3 cut(s)	95, 796, 914
BmgT120I	GGNCC	4 cut(s)	95, 565, 796, 914
BmiI	GGNNCC	1 cut(s)	916
BmrI	ACTGGG	1 cut(s)	912
BmsI	GCATC	2 cut(s)	688, 906
BmuI	ACTGGG	1 cut(s)	912
BpiI	GAAGAC	1 cut(s)	864
Bpu10I	CCTNAGC	1 cut(s)	641
Bpu1102I	GCTNAGC	2 cut(s)	290, 449
BpuEI	CTTGAG	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	5 cut(s)	725, 793, 848, 918, 940
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	591, 655
BseNI	ACTGG	5 cut(s)	725, 793, 848, 918, 940
BseRI	GAGGAG	1 cut(s)	776
BseXI	GCAGC	4 cut(s)	457, 569, 603, 606
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	2 cut(s)	567, 745
BshTI	ACCGGT	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	567, 745
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	151, 331
Bsp1720I	GCTNAGC	2 cut(s)	290, 449
BspACI	CCGC	2 cut(s)	286, 420
BspANI	GGCC	2 cut(s)	567, 745
BspCNI	CTCAG	2 cut(s)	590, 654
BspLI	GGNNCC	1 cut(s)	916
BspPI	GGATC	2 cut(s)	159, 326
BspQI	GCTCTTC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	5 cut(s)	725, 793, 848, 918, 940
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	2 cut(s)	151, 331
Bst4CI	ACNGT	3 cut(s)	116, 365, 632
Bst6I	CTCTTC	4 cut(s)	384, 522, 753, 830
BstAFI	CTTAAG	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	5 cut(s)	107, 290, 449, 577, 641
BstEII	GGTNACC	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	703
BstKTI	GATC	2 cut(s)	154, 334
BstMBI	GATC	2 cut(s)	151, 331
BstMWI	GCNNNNNNNGC	6 cut(s)	459, 587, 642, 707, 847, 903
BstNSI	RCATGY	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	736
BstV1I	GCAGC	4 cut(s)	457, 569, 603, 606
BstV2I	GAAGAC	1 cut(s)	864
BstXI	CCANNNNNNTGG	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	567, 745
BtsCI	GGATG	1 cut(s)	703
BtsIMutI	CAGTG	3 cut(s)	637, 841, 933
Cac8I	GCNNGC	1 cut(s)	647
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	4 cut(s)	95, 565, 796, 914
Csp6I	GTAC	1 cut(s)	628
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	6 cut(s)	89, 133, 352, 862, 877, 958
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	5 cut(s)	107, 290, 449, 577, 641
DpnI	GATC	2 cut(s)	153, 333
DpnII	GATC	2 cut(s)	151, 331
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	4 cut(s)	384, 522, 753, 830
EarI	CTCTTC	4 cut(s)	384, 522, 753, 830
Ecl136II	GAGCTC	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	3 cut(s)	95, 796, 914
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	671
Eco91I	GGTNACC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	914
EcoO65I	GGTNACC	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	955
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	6 cut(s)	92, 136, 355, 865, 880, 961
FalI	AAGNNNNNCTT	6 cut(s)	644, 676, 647, 679, 672, 704
FatI	CATG	6 cut(s)	88, 132, 351, 861, 876, 957
Fnu4HI	GCNGC	5 cut(s)	287, 446, 558, 617, 620
FokI	GGATG	1 cut(s)	710
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	5 cut(s)	287, 446, 558, 617, 620
FspBI	CTAG	3 cut(s)	54, 341, 702
GluI	GCNGC	5 cut(s)	287, 446, 558, 617, 620
HaeIII	GGCC	2 cut(s)	567, 745
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	6 cut(s)	92, 136, 355, 865, 880, 961
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	4 cut(s)	34, 356, 370, 939
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	8 cut(s)	25, 156, 477, 490, 526, 693, 856, 944
Hpy188III	TCNNGA	3 cut(s)	335, 427, 794
HpyAV	CCTTC	3 cut(s)	649, 688, 902
HpyCH4III	ACNGT	3 cut(s)	116, 365, 632
HpyCH4V	TGCA	6 cut(s)	312, 445, 462, 622, 710, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	459, 587, 642, 707, 847, 903
HpyF3I	CTNAG	5 cut(s)	107, 290, 449, 577, 641
Hsp92II	CATG	6 cut(s)	92, 136, 355, 865, 880, 961
Kzo9I	GATC	2 cut(s)	151, 331
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	5 cut(s)	141, 245, 253, 326, 601
Lsp1109I	GCAGC	4 cut(s)	457, 569, 603, 606
LweI	GCATC	2 cut(s)	688, 906
MaeI	CTAG	3 cut(s)	54, 341, 702
MaeIII	GTNAC	3 cut(s)	110, 116, 200
MalI	GATC	2 cut(s)	153, 333
MboI	GATC	2 cut(s)	151, 331
MboII	GAAGA	8 cut(s)	287, 365, 401, 539, 664, 770, 847, 869
MfeI	CAATTG	1 cut(s)	814
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	3 cut(s)	140, 440, 814
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	223, 496
Mox20I	TGGCCA	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	659
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	5 cut(s)	101, 174, 536, 606, 665
Msp20I	TGGCCA	1 cut(s)	745
MspA1I	CMGCKG	1 cut(s)	169
MspCI	CTTAAG	1 cut(s)	535
MspI	CCGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	814
Mva1269I	GAATGC	1 cut(s)	422
MwoI	GCNNNNNNNGC	6 cut(s)	459, 587, 642, 707, 847, 903
NdeII	GATC	2 cut(s)	151, 331
NlaIII	CATG	6 cut(s)	92, 136, 355, 865, 880, 961
NlaIV	GGNNCC	1 cut(s)	916
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	384
PctI	GAATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	3 cut(s)	34, 370, 939
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	5 cut(s)	288, 447, 559, 618, 621
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	914
Psp124BI	GAGCTC	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	914
PspEI	GGTNACC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	916
PspPI	GGNCC	4 cut(s)	95, 565, 796, 914
PspPPI	RGGWCCY	1 cut(s)	914
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
SacI	GAGCTC	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	5 cut(s)	101, 174, 536, 606, 665
SatI	GCNGC	5 cut(s)	287, 446, 558, 617, 620
Sau3AI	GATC	2 cut(s)	151, 331
Sau96I	GGNCC	4 cut(s)	95, 565, 796, 914
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	2 cut(s)	688, 906
SfcI	CTRYAG	1 cut(s)	736
SinI	GGWCC	3 cut(s)	95, 796, 914
SmlI	CTYRAG	2 cut(s)	427, 535
SmoI	CTYRAG	2 cut(s)	427, 535
Sse9I	AATT	3 cut(s)	140, 440, 814
SsiI	CCGC	2 cut(s)	286, 420
SspMI	CTAG	3 cut(s)	54, 341, 702
SstI	GAGCTC	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	116, 365, 632
TasI	AATT	3 cut(s)	140, 440, 814
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	3 cut(s)	34, 370, 939
Tru1I	TTAA	5 cut(s)	101, 174, 536, 606, 665
Tru9I	TTAA	5 cut(s)	101, 174, 536, 606, 665
TscAI	CASTG	3 cut(s)	637, 848, 940
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	4 cut(s)	445, 557, 616, 619
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	8 cut(s)	17, 176, 275, 340, 365, 522, 811, 878
TspGWI	ACGGA	3 cut(s)	87, 164, 770
TspRI	CASTG	3 cut(s)	637, 848, 940
Vha464I	CTTAAG	1 cut(s)	535
VpaK11BI	GGWCC	3 cut(s)	95, 796, 914
XceI	RCATGY	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	3 cut(s)	54, 341, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.