pycom04g17070

Homeobox protein knotted-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013693
Physical Location & Seq
Forward (+)
19620944 .. 19623492
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17070.4

Sequence Viewer

Length: 654 bp
ATGAGCACCTGCAGTGAGATAGGAGCTGATCCAGAACTAGACGAGTTCATGGAATCATATATTGGGGTTCTCCATAGATTCAAGGAGGAGCTATCTAAGCCATTCGATGAAGCAACAACATTCTTGGTCAACATTCAAACTCAACTTAGCAACCTCTGTAAAGGGACATTCCCAAATACCTGGGACAATCACTCTGATGAAGGGGTCGGCAGTTCAGAGGAGGAACTTAACTGTGGGGCGGTGGAAGCAGCAGAGAGTCAAGAAATTGGTGGTGCTCATTCTAGTGGTGATCGGGAACTGAAAGGTATGCTGCTGAATAAGTACAGTGGCTACCTTAGCAGTTTGAGGAAGGAGTTCTTAAAGAAAAGAAAGAAAGGGAAGCTACCGAACGATGCCAGGACTACCTTATTGGATTGGTGGACTATTCACTATAGGTGGCCATATCCTACGGAAGAGGAGAAATTGCAGCTGTCTGAGATGACTGGATTGGACCAAAGGCAGATCAACAACTGGTTCATAAACCAGAGGAAGAGACATTGGAAACCATCTGAAGACATGAGGTTTGCTCTCATGGAAGGCGTCGGTGGGAGCACCGGAGGACCTGTGATGTTTGACACTGGTTTTGGAACTGGAAATATTCATGATGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

218

Amino Acids

24.59

Weight (kDa)

5.13

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013693)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g07460 FvH4_6g07460 FvH4_6g07460
malus_domestica MD04G1215500.v1.1 MD12G1205700.v1.1
prunus_persica Prupe.6G312900_v2.0.a1
pyrus_communis pycom04g17070 pycom12g19370
rosa_chinensis RchiOBHm_Chr3g0457121
rosa_laevigata RLG00000025247
rosa_multiflora Rmu_sc0000488.1_g000009
rosa_roxburghii Rroxscaffold_6G00422170
rosa_rugosa Rorug03G0018800
rosa_samantha Rh3AG078700 Rh3BG080500 Rh3CG080500 Rh3DG082300
rosa_wichuraiana Rw3G006760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 579
AfaI GTAC 1 cut(s) 323
AgsI TTSAA 2 cut(s) 82, 137
AjnI CCWGG 2 cut(s) 179, 395
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 4 cut(s) 26, 91, 382, 469
AluI AGCT 4 cut(s) 26, 91, 382, 469
Alw21I GWGCWC 3 cut(s) 8, 277, 593
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 3 cut(s) 248, 310, 466
ArsI GACNNNNNNTTYG 4 cut(s) 545, 577, 605, 637
Asp700I GAANNNNTTC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 490, 599
AsuHPI GGTGA 1 cut(s) 299
AvaII GGWCC 2 cut(s) 490, 599
BalI TGGCCA 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 558
Bbv12I GWGCWC 3 cut(s) 8, 277, 593
BbvI GCAGC 3 cut(s) 260, 297, 478
BccI CCATC 2 cut(s) 553, 638
BciT130I CCWGG 2 cut(s) 181, 397
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 2 cut(s) 38, 282
BfmI CTRYAG 2 cut(s) 10, 430
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 3 cut(s) 249, 311, 467
BlsI GCNGC 3 cut(s) 250, 312, 468
Bme1390I CCNGG 2 cut(s) 181, 397
Bme18I GGWCC 2 cut(s) 490, 599
BmgT120I GGNCC 2 cut(s) 490, 599
BmrFI CCNGG 2 cut(s) 181, 397
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 558
BplI GAGNNNNNCTC 2 cut(s) 550, 582
Bpu10I CCTNAGC 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 593
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bse1I ACTGG 4 cut(s) 487, 515, 622, 634
BseBI CCWGG 2 cut(s) 181, 397
BseDI CCNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 4 cut(s) 487, 515, 622, 634
BseRI GAGGAG 3 cut(s) 101, 233, 470
BseXI GCAGC 3 cut(s) 260, 297, 478
BshFI GGCC 1 cut(s) 439
BsiHKAI GWGCWC 3 cut(s) 8, 277, 593
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 2 cut(s) 178, 197
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 2 cut(s) 178, 197
BsnI GGCC 1 cut(s) 439
Bsp1286I GDGCHC 3 cut(s) 8, 277, 593
Bsp143I GATC 3 cut(s) 28, 289, 501
BspACI CCGC 1 cut(s) 239
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 466
BspHI TCATGA 1 cut(s) 640
BspMAI CTGCAG 1 cut(s) 14
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 4 cut(s) 487, 515, 622, 634
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 28, 289, 501
BssNI GRCGYC 1 cut(s) 579
Bst2UI CCWGG 2 cut(s) 181, 397
Bst4CI ACNGT 2 cut(s) 233, 326
Bst6I CTCTTC 2 cut(s) 447, 524
BstACI GRCGYC 1 cut(s) 579
BstDEI CTNAG 4 cut(s) 96, 146, 335, 474
BstKTI GATC 3 cut(s) 31, 292, 504
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 3 cut(s) 28, 289, 501
BstMWI GCNNNNNNNGC 3 cut(s) 97, 245, 336
BstNI CCWGG 2 cut(s) 181, 397
BstSCI CCNGG 2 cut(s) 179, 395
BstSFI CTRYAG 2 cut(s) 10, 430
BstV1I GCAGC 3 cut(s) 260, 297, 478
BstV2I GAAGAC 1 cut(s) 558
BstXI CCANNNNNNTGG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 439
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 3 cut(s) 19, 331, 615
BveI ACCTGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 490, 599
CseI GACGC 1 cut(s) 568
Csp6I GTAC 1 cut(s) 322
CviAII CATG 4 cut(s) 49, 556, 571, 641
CviJI RGCY 7 cut(s) 26, 91, 100, 330, 382, 439, 469
CviKI_1 RGCY 7 cut(s) 26, 91, 100, 330, 382, 439, 469
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 4 cut(s) 96, 146, 335, 474
DpnI GATC 3 cut(s) 30, 291, 503
DpnII GATC 3 cut(s) 28, 289, 501
EaeI YGGCCR 1 cut(s) 437
Eam1104I CTCTTC 2 cut(s) 447, 524
EarI CTCTTC 2 cut(s) 447, 524
Eco47I GGWCC 2 cut(s) 490, 599
Eco57I CTGAAG 1 cut(s) 570
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 179, 395
FaeI CATG 4 cut(s) 52, 559, 574, 644
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 2 cut(s) 178, 197
FatI CATG 4 cut(s) 48, 555, 570, 640
Fnu4HI GCNGC 3 cut(s) 249, 311, 467
Fsp4HI GCNGC 3 cut(s) 249, 311, 467
FspBI CTAG 2 cut(s) 38, 282
GluI GCNGC 3 cut(s) 249, 311, 467
HaeIII GGCC 1 cut(s) 439
HapII CCGG 1 cut(s) 594
HgaI GACGC 1 cut(s) 568
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 4 cut(s) 52, 559, 574, 644
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 3 cut(s) 53, 78, 256
HpaII CCGG 1 cut(s) 594
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 130, 420
Hpy188I TCNGA 4 cut(s) 196, 217, 475, 550
Hpy188III TCNNGA 4 cut(s) 32, 260, 293, 641
Hpy8I GTNNAC 2 cut(s) 130, 420
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 3 cut(s) 194, 343, 569
HpyCH4III ACNGT 2 cut(s) 233, 326
HpyCH4V TGCA 2 cut(s) 12, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 245, 336
HpyF3I CTNAG 4 cut(s) 96, 146, 335, 474
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 4 cut(s) 52, 559, 574, 644
Kzo9I GATC 3 cut(s) 28, 289, 501
LmnI GCTCC 3 cut(s) 23, 88, 588
Lsp1109I GCAGC 3 cut(s) 260, 297, 478
LweI GCATC 1 cut(s) 382
MaeI CTAG 2 cut(s) 38, 282
MalI GATC 3 cut(s) 30, 291, 503
MboI GATC 3 cut(s) 28, 289, 501
MboII GAAGA 3 cut(s) 464, 541, 563
MhlI GDGCHC 3 cut(s) 8, 277, 593
MlsI TGGCCA 1 cut(s) 439
MluCI AATT 2 cut(s) 264, 461
MluNI TGGCCA 1 cut(s) 439
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 9 cut(s) 79, 164, 211, 214, 339, 448, 519, 552, 590
Mox20I TGGCCA 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 353
MscI TGGCCA 1 cut(s) 439
MseI TTAA 2 cut(s) 228, 359
MslI CAYNNNNRTG 2 cut(s) 195, 282
Msp20I TGGCCA 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 2 cut(s) 181, 397
MvaI CCWGG 2 cut(s) 181, 397
MwoI GCNNNNNNNGC 3 cut(s) 97, 245, 336
NdeII GATC 3 cut(s) 28, 289, 501
NlaIII CATG 4 cut(s) 52, 559, 574, 644
PagI TCATGA 1 cut(s) 640
PaqCI CACCTGC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 53, 78
PkrI GCNGC 3 cut(s) 250, 312, 468
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 179, 395
PspGI CCWGG 2 cut(s) 179, 395
PspPI GGNCC 2 cut(s) 490, 599
PspPPI RGGWCCY 1 cut(s) 599
PstI CTGCAG 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 2 cut(s) 195, 282
SaqAI TTAA 2 cut(s) 228, 359
SatI GCNGC 3 cut(s) 249, 311, 467
Sau3AI GATC 3 cut(s) 28, 289, 501
Sau96I GGNCC 2 cut(s) 490, 599
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 181, 397
SduI GDGCHC 3 cut(s) 8, 277, 593
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 2 cut(s) 10, 430
SinI GGWCC 2 cut(s) 490, 599
SmiMI CAYNNNNRTG 2 cut(s) 195, 282
Sse9I AATT 2 cut(s) 264, 461
SsiI CCGC 1 cut(s) 239
SspI AATATT 1 cut(s) 637
SspMI CTAG 2 cut(s) 38, 282
StyD4I CCNGG 2 cut(s) 179, 395
TaaI ACNGT 2 cut(s) 233, 326
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 264, 461
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 2 cut(s) 53, 78
Tru1I TTAA 2 cut(s) 228, 359
Tru9I TTAA 2 cut(s) 228, 359
TscAI CASTG 3 cut(s) 19, 331, 622
TseI GCWGC 3 cut(s) 248, 310, 466
TspDTI ATGAA 5 cut(s) 37, 123, 213, 505, 629
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 3 cut(s) 19, 331, 622
VpaK11BI GGWCC 2 cut(s) 490, 599
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 2 cut(s) 38, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.